Rorug03G0176400

DnaJ molecular chaperone homology domain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
14974350 .. 14976768
2419 bp
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UTR
Exon/CDS
Intron
Rorug03G0176400.1

Sequence Viewer

Length: 1467 bp
ATGAATAGCAGAAAACGCACAATAGATGACTACAACAGGTGGTCCAAGCATCTTCCTGATGAATTGATTGAAATGATTGTGAAGCGTCTAACCCTAGTCGATTCAAGAAGATTCGCTGCTGTGTGTCCATCTTGGAGAAGGGTATCATCACAATGGTTTCAACGAGTAACCAGACTTCCATGGCTCTTGAATTCGGCCGATTTTCTAGACTCAGAAGATGTGAAATATAGTCTTTACAGTCCAACTGAAGACAGAGTCTATAACCTCAAGTTTCGAAGAGAAGATAATAATATGGGTGCTTCACGTAGTAATCAATCAATACGGTGCTCGGGCTCAGTTGATGGCTGGTTGATAATGTCTGAATGGGCATCAAATATGATTGATCCGATGTCCATCAATTACTTCTTGAACCCAATGACAGGTGATCGTATTAAGCTGCCCCAGCTGACCGAAATCCCATGGATTTCCGCTGCCTCTTCAGATCCAAGATGTTCTGATTGCATCGTTGCAGTAATTGCAGGAGAAAGGAAGGAGTTGGTGTTTTGCAGGCCAAGTAGTCATATATCATGTATTTGGCAAGGGCAAGAAAATTGTTATATAAAATACGTTAAATTTCACGAGGATGGGAAGTTATACGCAATACGAGAGGATATGGATTCTATACTTGTTCTTGTTTTAGATCCCTTAAATCATTGCCAAGGCAAAGGCAAGTGTGAGAAAATTATTGCTTGCAAGGAAAAGACCATGGTAGCTGGAATCCCACATGGGGCTGGGGATCAGGACGACTGGGTCGGTTGGTTCTCGTCTGCATCATTTATCTGGTCCTCCAAAGGTGAGGTTTTACTGGTTTGGCAGCCGCATTACGAGCCCTACGGCGATCAGAATGCTATTCCATTTTATGTGTTCAAGATAGATAGAAGTGGTTCTAAACCTATTTGGGTGAAGACGAATGACGTTGATGAAGACCGAGTAATCTTTGTATCCGCCTCGCACAGCACCTCTATGTCAATGTCGAAGCTCGCCGAGTCATTTATGACAACCAAAGATGAGGCTTTTCTTGGACTTGGATGTGGAACATACTGCATCTGCTATAATTGGGATGAACATAATCGACTTGGTGTTTTTGCTTGTAACTTAGCCGACAAAACTTGCAGTTATCTTTCCAGAAGCGGTCTTCAACATGCAAAGGGAGAGGGTTCGTCGAAGGACTTGTATATTTCACAGGGGAATTTTTTCATCAATCCAATGATAGGGGCTTGGCTTATGCTGCCACCACTGGTGAGCGCCTGCCCATGGATCTCCCTGGCCTCTGCAGATCCAAAATGTTGGAAATGCATTGTAGCAGCAATTACATATAACAGAAGTAGGTTGGTGTTTTGCAGGCCAACTGATGAATCGTGGACTTTCCAACAGATGAAAGATGATGAACATATGGCTGAAATTAAATTCCAGGATGGGAAGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

488

Amino Acids

55.77

Weight (kDa)

6.39

Isoelectric Point (pI)

41.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 17 - 49 2.7e-06 F-box domain
Beta-prop_KIB1-4 PF03478 78 - 340 4.6e-26 KIB1-4 beta-propeller
Beta-prop_KIB1-4 PF03478 410 - 488 6.7e-06 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 788
AciI CCGC 4 cut(s) 468, 857, 984, 1170
AclWI GGATC 6 cut(s) 377, 476, 674, 783, 1304, 1310
AcoI YGGCCR 1 cut(s) 195
AcsI RAATTY 4 cut(s) 190, 611, 1228, 1445
AcuI CTGAAG 2 cut(s) 267, 462
AfiI CCNNNNNNNGG 4 cut(s) 419, 766, 1250, 1293
AgsI TTSAA 7 cut(s) 71, 105, 161, 190, 409, 907, 1178
AjnI CCWGG 2 cut(s) 1302, 1449
AluBI AGCT 5 cut(s) 436, 445, 752, 1018, 1462
AluI AGCT 5 cut(s) 436, 445, 752, 1018, 1462
Alw21I GWGCWC 1 cut(s) 329
AlwI GGATC 6 cut(s) 377, 476, 674, 783, 1304, 1310
Ama87I CYCGRG 1 cut(s) 328
AoxI GGCC 4 cut(s) 195, 548, 1305, 1382
ApeKI GCWGC 6 cut(s) 116, 436, 470, 853, 1267, 1343
ApoI RAATTY 4 cut(s) 190, 611, 1228, 1445
Asp700I GAANNNNTTC 2 cut(s) 922, 1232
AspLEI GCGC 1 cut(s) 1286
AspS9I GGNCC 2 cut(s) 42, 822
AsuHPI GGTGA 4 cut(s) 434, 845, 952, 1291
AsuII TTCGAA 1 cut(s) 274
AvaI CYCGRG 1 cut(s) 328
AvaII GGWCC 2 cut(s) 42, 822
BanII GRGCYC 2 cut(s) 335, 870
BarI GAAGNNNNNNTAC 2 cut(s) 159, 191
BauI CACGAG 1 cut(s) 617
BbsI GAAGAC 4 cut(s) 255, 950, 969, 1166
Bbv12I GWGCWC 1 cut(s) 329
BbvI GCAGC 6 cut(s) 103, 423, 457, 865, 1254, 1355
BccI CCATC 5 cut(s) 136, 335, 401, 617, 1448
BceAI ACGGC 1 cut(s) 889
BcgI CGANNNNNNTGC 2 cut(s) 866, 900
BciT130I CCWGG 2 cut(s) 1304, 1451
BciVI GTATCC 1 cut(s) 991
BfaI CTAG 2 cut(s) 95, 206
BfmI CTRYAG 2 cut(s) 1311, 1463
BfoI RGCGCY 1 cut(s) 1287
BfuI GTATCC 1 cut(s) 991
BisI GCNGC 7 cut(s) 117, 437, 471, 854, 857, 1268, 1344
BlsI GCNGC 7 cut(s) 118, 438, 472, 855, 858, 1269, 1345
Bme1390I CCNGG 2 cut(s) 1304, 1451
Bme18I GGWCC 2 cut(s) 42, 822
BmeT110I CYCGRG 1 cut(s) 328
BmgT120I GGNCC 2 cut(s) 42, 822
BmrFI CCNGG 2 cut(s) 1304, 1451
BmrI ACTGGG 1 cut(s) 796
BmsI GCATC 5 cut(s) 58, 377, 510, 818, 1092
BmuI ACTGGG 1 cut(s) 796
BpiI GAAGAC 4 cut(s) 255, 950, 969, 1166
Bpu14I TTCGAA 1 cut(s) 274
BpuEI CTTGAG 1 cut(s) 251
BsaAI YACGTR 1 cut(s) 305
BsaBI GATNNNNATC 1 cut(s) 392
BsaJI CCNNGG 6 cut(s) 179, 458, 697, 744, 1292, 1302
BsaXI ACNNNNNCTCC 2 cut(s) 524, 554
Bsc4I CCNNNNNNNGG 4 cut(s) 419, 766, 1250, 1293
Bse1I ACTGG 3 cut(s) 791, 849, 1281
Bse3DI GCAATG 1 cut(s) 691
Bse8I GATNNNNATC 1 cut(s) 392
BseBI CCWGG 2 cut(s) 1304, 1451
BseDI CCNNGG 6 cut(s) 179, 458, 697, 744, 1292, 1302
BseGI GGATG 4 cut(s) 628, 1073, 1105, 1459
BseJI GATNNNNATC 1 cut(s) 392
BseLI CCNNNNNNNGG 4 cut(s) 419, 766, 1250, 1293
BseMI GCAATG 1 cut(s) 691
BseMII CTCAG 2 cut(s) 225, 348
BseNI ACTGG 3 cut(s) 791, 849, 1281
BseX3I CGGCCG 1 cut(s) 195
BseXI GCAGC 6 cut(s) 103, 423, 457, 865, 1254, 1355
BseYI CCCAGC 2 cut(s) 441, 770
Bsh1285I CGRYCG 1 cut(s) 198
BshFI GGCC 4 cut(s) 197, 550, 1307, 1384
BsiEI CGRYCG 1 cut(s) 198
BsiHKAI GWGCWC 1 cut(s) 329
BsiHKCI CYCGRG 1 cut(s) 328
BslI CCNNNNNNNGG 4 cut(s) 419, 766, 1250, 1293
BsmI GAATGC 1 cut(s) 889
BsnI GGCC 4 cut(s) 197, 550, 1307, 1384
BsoBI CYCGRG 1 cut(s) 328
Bsp119I TTCGAA 1 cut(s) 274
Bsp1286I GDGCHC 3 cut(s) 329, 335, 870
Bsp143I GATC 8 cut(s) 382, 424, 481, 679, 775, 877, 1296, 1315
Bsp19I CCATGG 4 cut(s) 179, 458, 744, 1292
BspACI CCGC 4 cut(s) 468, 857, 984, 1170
BspANI GGCC 4 cut(s) 197, 550, 1307, 1384
BspCNI CTCAG 2 cut(s) 224, 347
BspMAI CTGCAG 1 cut(s) 1315
BspPI GGATC 6 cut(s) 377, 476, 674, 783, 1304, 1310
BspT104I TTCGAA 1 cut(s) 274
BsrDI GCAATG 1 cut(s) 691
BsrI ACTGG 3 cut(s) 791, 849, 1281
BssECI CCNNGG 6 cut(s) 179, 458, 697, 744, 1292, 1302
BssMI GATC 8 cut(s) 382, 424, 481, 679, 775, 877, 1296, 1315
BssSI CACGAG 1 cut(s) 617
BssT1I CCWWGG 5 cut(s) 179, 458, 697, 744, 1292
Bst2BI CACGAG 1 cut(s) 617
Bst2UI CCWGG 2 cut(s) 1304, 1451
Bst4CI ACNGT 2 cut(s) 239, 324
Bst6I CTCTTC 2 cut(s) 271, 481
BstAPI GCANNNNNTGC 1 cut(s) 515
BstBAI YACGTR 1 cut(s) 305
BstBI TTCGAA 1 cut(s) 274
BstC8I GCNNGC 5 cut(s) 548, 730, 1020, 1288, 1382
BstDEI CTNAG 3 cut(s) 211, 334, 1135
BstDSI CCRYGG 4 cut(s) 179, 458, 744, 1292
BstF5I GGATG 4 cut(s) 628, 1073, 1105, 1459
BstH2I RGCGCY 1 cut(s) 1287
BstHHI GCGC 1 cut(s) 1286
BstKTI GATC 8 cut(s) 385, 427, 484, 682, 778, 880, 1299, 1318
BstMBI GATC 8 cut(s) 382, 424, 481, 679, 775, 877, 1296, 1315
BstMCI CGRYCG 1 cut(s) 198
BstMWI GCNNNNNNNGC 5 cut(s) 15, 442, 515, 865, 1267
BstNI CCWGG 2 cut(s) 1304, 1451
BstNSI RCATGY 1 cut(s) 1184
BstSCI CCNGG 2 cut(s) 1302, 1449
BstSFI CTRYAG 2 cut(s) 1311, 1463
BstV1I GCAGC 6 cut(s) 103, 423, 457, 865, 1254, 1355
BstV2I GAAGAC 4 cut(s) 255, 950, 969, 1166
BstX2I RGATCY 4 cut(s) 481, 679, 1296, 1315
BstXI CCANNNNNNTGG 1 cut(s) 1326
BstYI RGATCY 4 cut(s) 481, 679, 1296, 1315
BstZI CGGCCG 1 cut(s) 195
BsuI GTATCC 1 cut(s) 991
BsuRI GGCC 4 cut(s) 197, 550, 1307, 1384
BtgI CCRYGG 4 cut(s) 179, 458, 744, 1292
BtsCI GGATG 4 cut(s) 628, 1073, 1105, 1459
BtsIMutI CAGTG 1 cut(s) 1274
Cac8I GCNNGC 5 cut(s) 548, 730, 1020, 1288, 1382
CfoI GCGC 1 cut(s) 1286
Cfr13I GGNCC 2 cut(s) 42, 822
CseI GACGC 1 cut(s) 74
CviAII CATG 7 cut(s) 180, 459, 567, 745, 764, 1181, 1293
DdeI CTNAG 3 cut(s) 211, 334, 1135
DpnI GATC 8 cut(s) 384, 426, 483, 681, 777, 879, 1298, 1317
DpnII GATC 8 cut(s) 382, 424, 481, 679, 775, 877, 1296, 1315
DrdI GACNNNNNNGTC 1 cut(s) 788
DseDI GACNNNNNNGTC 1 cut(s) 788
EaeI YGGCCR 1 cut(s) 195
EagI CGGCCG 1 cut(s) 195
Eam1104I CTCTTC 2 cut(s) 271, 481
EarI CTCTTC 2 cut(s) 271, 481
EciI GGCGGA 1 cut(s) 973
EclXI CGGCCG 1 cut(s) 195
Eco130I CCWWGG 5 cut(s) 179, 458, 697, 744, 1292
Eco24I GRGCYC 2 cut(s) 335, 870
Eco47I GGWCC 2 cut(s) 42, 822
Eco52I CGGCCG 1 cut(s) 195
Eco57I CTGAAG 2 cut(s) 267, 462
Eco88I CYCGRG 1 cut(s) 328
EcoRI GAATTC 1 cut(s) 190
EcoRII CCWGG 2 cut(s) 1302, 1449
EcoT14I CCWWGG 5 cut(s) 179, 458, 697, 744, 1292
EcoT22I ATGCAT 1 cut(s) 1337
EcoT38I GRGCYC 2 cut(s) 335, 870
ErhI CCWWGG 5 cut(s) 179, 458, 697, 744, 1292
FaeI CATG 7 cut(s) 183, 462, 570, 748, 767, 1184, 1296
FatI CATG 7 cut(s) 179, 458, 566, 744, 763, 1180, 1292
FauNDI CATATG 1 cut(s) 1431
Fnu4HI GCNGC 7 cut(s) 117, 437, 471, 854, 857, 1268, 1344
FokI GGATG 3 cut(s) 635, 1080, 1112
FriOI GRGCYC 2 cut(s) 335, 870
Fsp4HI GCNGC 7 cut(s) 117, 437, 471, 854, 857, 1268, 1344
FspBI CTAG 2 cut(s) 95, 206
GlaI GCGC 1 cut(s) 1285
GluI GCNGC 7 cut(s) 117, 437, 471, 854, 857, 1268, 1344
GsaI CCCAGC 2 cut(s) 445, 774
HaeII RGCGCY 1 cut(s) 1287
HaeIII GGCC 4 cut(s) 197, 550, 1307, 1384
HgaI GACGC 1 cut(s) 74
HhaI GCGC 1 cut(s) 1286
Hin1II CATG 7 cut(s) 183, 462, 570, 748, 767, 1184, 1296
Hin6I GCGC 1 cut(s) 1284
HinP1I GCGC 1 cut(s) 1284
HinfI GANTC 8 cut(s) 101, 111, 209, 255, 656, 756, 1025, 1394
HphI GGTGA 4 cut(s) 434, 845, 952, 1291
Hpy166II GTNNAC 1 cut(s) 1401
Hpy188I TCNGA 6 cut(s) 214, 361, 387, 481, 496, 882
Hpy188III TCNNGA 9 cut(s) 56, 105, 187, 206, 406, 617, 779, 907, 1164
Hpy8I GTNNAC 1 cut(s) 1401
Hpy99I CGWCG 1 cut(s) 1204
HpyAV CCTTC 3 cut(s) 132, 523, 1198
HpyCH4III ACNGT 2 cut(s) 239, 324
HpyCH4IV ACGT 3 cut(s) 304, 606, 954
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 442, 515, 865, 1267
HpyF3I CTNAG 3 cut(s) 211, 334, 1135
HpySE526I ACGT 3 cut(s) 304, 606, 954
Hsp92II CATG 7 cut(s) 183, 462, 570, 748, 767, 1184, 1296
HspAI GCGC 1 cut(s) 1284
Kzo9I GATC 8 cut(s) 382, 424, 481, 679, 775, 877, 1296, 1315
Lsp1109I GCAGC 6 cut(s) 103, 423, 457, 865, 1254, 1355
LweI GCATC 5 cut(s) 58, 377, 510, 818, 1092
MaeI CTAG 2 cut(s) 95, 206
MaeII ACGT 3 cut(s) 304, 606, 954
MaeIII GTNAC 2 cut(s) 166, 1130
MalI GATC 8 cut(s) 384, 426, 483, 681, 777, 879, 1298, 1317
MboI GATC 8 cut(s) 382, 424, 481, 679, 775, 877, 1296, 1315
MflI RGATCY 4 cut(s) 481, 679, 1296, 1315
MhlI GDGCHC 3 cut(s) 329, 335, 870
MlyI GAGTC 3 cut(s) 203, 264, 1034
MmeI TCCRAC 3 cut(s) 266, 1307, 1432
Mph1103I ATGCAT 1 cut(s) 1337
MroXI GAANNNNTTC 2 cut(s) 922, 1232
MseI TTAA 4 cut(s) 432, 609, 686, 1443
MslI CAYNNNNRTG 3 cut(s) 151, 621, 1001
MspA1I CMGCKG 2 cut(s) 445, 470
MspR9I CCNGG 2 cut(s) 1304, 1451
Mva1269I GAATGC 1 cut(s) 889
MvaI CCWGG 2 cut(s) 1304, 1451
MwoI GCNNNNNNNGC 5 cut(s) 15, 442, 515, 865, 1267
NcoI CCATGG 4 cut(s) 179, 458, 744, 1292
NdeI CATATG 1 cut(s) 1431
NdeII GATC 8 cut(s) 382, 424, 481, 679, 775, 877, 1296, 1315
NlaIII CATG 7 cut(s) 183, 462, 570, 748, 767, 1184, 1296
NmeAIII GCCGAG 1 cut(s) 1048
NsiI ATGCAT 1 cut(s) 1337
NspI RCATGY 1 cut(s) 1184
NspV TTCGAA 1 cut(s) 274
PctI GAATGC 1 cut(s) 889
PdmI GAANNNNTTC 2 cut(s) 922, 1232
PfeI GAWTC 5 cut(s) 101, 111, 656, 756, 1394
PflFI GACNNNGTC 2 cut(s) 254, 788
PfoI TCCNGGA 1 cut(s) 1449
PkrI GCNGC 7 cut(s) 118, 438, 472, 855, 858, 1269, 1345
PleI GAGTC 3 cut(s) 203, 263, 1033
PpsI GAGTC 3 cut(s) 203, 263, 1033
Ppu21I YACGTR 1 cut(s) 305
Psp6I CCWGG 2 cut(s) 1302, 1449
PspFI CCCAGC 2 cut(s) 441, 770
PspGI CCWGG 2 cut(s) 1302, 1449
PspPI GGNCC 2 cut(s) 42, 822
PstI CTGCAG 1 cut(s) 1315
PsuI RGATCY 4 cut(s) 481, 679, 1296, 1315
PsyI GACNNNGTC 2 cut(s) 254, 788
PvuII CAGCTG 1 cut(s) 445
RseI CAYNNNNRTG 3 cut(s) 151, 621, 1001
SaqAI TTAA 4 cut(s) 432, 609, 686, 1443
SatI GCNGC 7 cut(s) 117, 437, 471, 854, 857, 1268, 1344
Sau3AI GATC 8 cut(s) 382, 424, 481, 679, 775, 877, 1296, 1315
Sau96I GGNCC 2 cut(s) 42, 822
SchI GAGTC 3 cut(s) 203, 264, 1034
ScrFI CCNGG 2 cut(s) 1304, 1451
SduI GDGCHC 3 cut(s) 329, 335, 870
SfaNI GCATC 5 cut(s) 58, 377, 510, 818, 1092
SfcI CTRYAG 2 cut(s) 1311, 1463
SfuI TTCGAA 1 cut(s) 274
SinI GGWCC 2 cut(s) 42, 822
SmiMI CAYNNNNRTG 3 cut(s) 151, 621, 1001
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
SsiI CCGC 4 cut(s) 468, 857, 984, 1170
SspMI CTAG 2 cut(s) 95, 206
StyD4I CCNGG 2 cut(s) 1302, 1449
StyI CCWWGG 5 cut(s) 179, 458, 697, 744, 1292
TaaI ACNGT 2 cut(s) 239, 324
TaiI ACGT 3 cut(s) 307, 609, 957
TaqI TCGA 5 cut(s) 99, 274, 1013, 1111, 1202
TaqII GACCGA 2 cut(s) 464, 981
TauI GCSGC 1 cut(s) 859
TfiI GAWTC 5 cut(s) 101, 111, 656, 756, 1394
Tru1I TTAA 4 cut(s) 432, 609, 686, 1443
Tru9I TTAA 4 cut(s) 432, 609, 686, 1443
TscAI CASTG 1 cut(s) 1281
TseI GCWGC 6 cut(s) 116, 436, 470, 853, 1267, 1343
TspDTI ATGAA 8 cut(s) 17, 75, 975, 1116, 1225, 1407, 1430, 1440
TspRI CASTG 1 cut(s) 1281
Tth111I GACNNNGTC 2 cut(s) 254, 788
VpaK11BI GGWCC 2 cut(s) 42, 822
XapI RAATTY 4 cut(s) 190, 611, 1228, 1445
XbaI TCTAGA 1 cut(s) 205
XceI RCATGY 1 cut(s) 1184
XmnI GAANNNNTTC 2 cut(s) 922, 1232
XspI CTAG 2 cut(s) 95, 206
Zsp2I ATGCAT 1 cut(s) 1337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.