Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007048

Physical Location & Seq

Genomic Coordinates Forward (+)

17927181 .. 17929138

Gene Structure 1958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G43120.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGAGAGCTGCAATAAACAGAGCAAATTCACTTGGAGGTTTGTTTTCATTTAGGTTTATCAGAAACATCAAATCAATGTCTTCTTCTACTTCCCAAGATTTCGTATCAAGACCTGTTATCAAGAAAGTCTTCGCTAAGCTTCAGAAAGAAGGCGATGGAGCCGTCGTTAGACGTGGCATTTCCAGGAGTGAGCAGAAGTTGTTAGATCCTTTCTTGATGCTAGATGAATTCTCCGTTTCGCCTCCAGCTGGCTTCCCTGATCATCCTCACAGAGGGTTTGAAACTGTTACATACGTACTAGAGGGAGGAATCACTCACCAAGACTTCAAAGGTCACAAGGGTACAATATATGCTGGTGATGTTCAGTGGATGACTGCAGGAAGAGGAATCATTCATTCTGAAATGCCTGAAGAAGAAGTCAACAAAGGTTTACAACTTTGGATCAATCTTTCCTCCAACGAGAAAATGATAGAACCAAACTACCAAGAACTGTCGCATTCAGACATACCAAAAGCAGAACAAAACGGTGTTGAAGTCAAAGTCATTGCAGGAGAATCAATGGGAATTCAATCACCTGTTTACACAAGAACACCTACTATGTTCCTCGATTTCACTCTCCAACCAGGAGCTCAAATCCACCAGAATGTTCCAGAATCTTGGAACGCATTTGCTTACATTCTAGAGAGCGGTGAAGGCGGCGGCGTTTTCAGTTCCTCGAACTCTTCGCCTATTCCAGCACACAGTGTTGTGGTGTTCGGACCAGGGAATGATGGTGTTAGCGTGTGGAACAAGTCATCTTCAAAGCAATTGAGGTTTGTGTTGATTGCTGGAGAACCGATTGGTGAACCGGTGGTTCAATACGGTCCGTTCGTGATGAATACTCAAGCTGAGATTGATATGACCATTGAAGATTATCACTATGGTAAGAATGGCTTCGAAATGGCCAAGTATTGGAGGTCACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009785 GO:0009892 GO:0009987 GO:0010033 GO:0010466 GO:0010605 GO:0016020 GO:0019222 GO:0023052 GO:0030162 GO:0030234 GO:0030414 GO:0030522 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032870 GO:0033993 GO:0042221 GO:0042742 GO:0043086 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051704 GO:0051707 GO:0051716 GO:0052547 GO:0060255 GO:0061134 GO:0065007 GO:0065009 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0071944 GO:0080090 GO:0097305 GO:0097306 GO:0098542 GO:0098772 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pirin Pirin_C

Protein Analysis

321

Amino Acids

35.54

Weight (kDa)

5.87

Isoelectric Point (pI)

57.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pirin	PF02678	109 - 199	3.2e-31	Pirin
Pirin_C	PF05726	253 - 362	2.3e-32	Pirin C-terminal cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43120 AT2G43120 AT3G59220 AT3G59260
fragaria_vesca	FvH4_4g11770 FvH4_4g11770 FvH4_4g11770 FvH4_4g11770
malus_domestica	MD04G1033300.v1.1
prunus_persica	Prupe.1G181100_v2.0.a1
pyrus_communis	pycom04g02740 pycom04g02780
rosa_chinensis	RchiOBHm_Chr4g0409021
rosa_laevigata	RLG00000008595
rosa_multiflora	Rmu_sc0000121.1_g000003 Rmu_sc0006766.1_g000003 Rmu_sc0017774.1_g000001 Rmu_sc0022473.1_g000002 Rmu_sc0026065.1_g000003
rosa_roxburghii	Rroxscaffold_5G00353500
rosa_rugosa	Rorug04G0089800
rosa_samantha	Rh4AG153500 Rh4BG151600 Rh4CG162000 Rh4DG146900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	951
AccBSI	CCGCTC	1 cut(s)	687
AciI	CCGC	3 cut(s)	687, 696, 699
AclWI	GGATC	2 cut(s)	200, 449
AcoI	YGGCCR	1 cut(s)	942
AcsI	RAATTY	3 cut(s)	25, 227, 564
AcuI	CTGAAG	2 cut(s)	125, 429
AdeI	CACNNNGTG	1 cut(s)	743
AfaI	GTAC	2 cut(s)	297, 343
AfiI	CCNNNNNNNGG	3 cut(s)	248, 272, 951
AgeI	ACCGGT	1 cut(s)	847
AgsI	TTSAA	7 cut(s)	281, 328, 533, 569, 801, 857, 908
AjiI	CACGTC	1 cut(s)	173
AjnI	CCWGG	3 cut(s)	182, 622, 760
AluBI	AGCT	5 cut(s)	8, 139, 248, 629, 887
AluI	AGCT	5 cut(s)	8, 139, 248, 629, 887
Alw21I	GWGCWC	1 cut(s)	631
AlwI	GGATC	2 cut(s)	200, 449
AoxI	GGCC	1 cut(s)	942
ApeKI	GCWGC	1 cut(s)	8
ApoI	RAATTY	3 cut(s)	25, 227, 564
AsiGI	ACCGGT	1 cut(s)	847
Asp700I	GAANNNNTTC	2 cut(s)	128, 932
AspS9I	GGNCC	2 cut(s)	758, 863
AsuHPI	GGTGA	5 cut(s)	308, 368, 564, 701, 854
AsuII	TTCGAA	1 cut(s)	936
AvaII	GGWCC	2 cut(s)	758, 863
BalI	TGGCCA	1 cut(s)	944
BanII	GRGCYC	1 cut(s)	631
BbsI	GAAGAC	2 cut(s)	72, 121
Bbv12I	GWGCWC	1 cut(s)	631
BccI	CCATC	2 cut(s)	149, 764
BceAI	ACGGC	1 cut(s)	146
BciT130I	CCWGG	3 cut(s)	184, 624, 762
BclI	TGATCA	1 cut(s)	259
BfaI	CTAG	3 cut(s)	221, 299, 680
BfmI	CTRYAG	1 cut(s)	375
BisI	GCNGC	3 cut(s)	9, 697, 700
BlpI	GCTNAGC	1 cut(s)	135
BlsI	GCNGC	3 cut(s)	10, 698, 701
Bme1390I	CCNGG	3 cut(s)	184, 624, 762
Bme18I	GGWCC	2 cut(s)	758, 863
BmgBI	CACGTC	1 cut(s)	173
BmgT120I	GGNCC	2 cut(s)	758, 863
BmiI	GGNNCC	1 cut(s)	160
BmrFI	CCNGG	3 cut(s)	184, 624, 762
BmsI	GCATC	1 cut(s)	207
BpiI	GAAGAC	2 cut(s)	72, 121
BpmI	CTGGAG	2 cut(s)	228, 849
Bpu1102I	GCTNAGC	1 cut(s)	135
Bpu14I	TTCGAA	1 cut(s)	936
BpuEI	CTTGAG	1 cut(s)	867
BsaAI	YACGTR	1 cut(s)	295
BsaJI	CCNNGG	1 cut(s)	761
BsaWI	WCCGGW	1 cut(s)	847
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bsc4I	CCNNNNNNNGG	3 cut(s)	248, 272, 951
Bse118I	RCCGGY	1 cut(s)	847
Bse3DI	GCAATG	1 cut(s)	543
BseBI	CCWGG	3 cut(s)	184, 624, 762
BseDI	CCNNGG	1 cut(s)	761
BseGI	GGATG	2 cut(s)	262, 375
BseLI	CCNNNNNNNGG	3 cut(s)	248, 272, 951
BseMI	GCAATG	1 cut(s)	543
BseMII	CTCAG	1 cut(s)	879
BshFI	GGCC	1 cut(s)	944
BshTI	ACCGGT	1 cut(s)	847
BsiHKAI	GWGCWC	1 cut(s)	631
BsiSI	CCGG	1 cut(s)	848
BslI	CCNNNNNNNGG	3 cut(s)	248, 272, 951
BsmI	GAATGC	1 cut(s)	496
BsnI	GGCC	1 cut(s)	944
Bsp119I	TTCGAA	1 cut(s)	936
Bsp1286I	GDGCHC	1 cut(s)	631
Bsp143I	GATC	3 cut(s)	205, 259, 441
Bsp1720I	GCTNAGC	1 cut(s)	135
BspACI	CCGC	3 cut(s)	687, 696, 699
BspANI	GGCC	1 cut(s)	944
BspCNI	CTCAG	1 cut(s)	880
BspLI	GGNNCC	1 cut(s)	160
BspMAI	CTGCAG	1 cut(s)	379
BspPI	GGATC	2 cut(s)	200, 449
BspT104I	TTCGAA	1 cut(s)	936
BsrBI	CCGCTC	1 cut(s)	687
BsrDI	GCAATG	1 cut(s)	543
BsrFI	RCCGGY	1 cut(s)	847
BssAI	RCCGGY	1 cut(s)	847
BssECI	CCNNGG	1 cut(s)	761
BssMI	GATC	3 cut(s)	205, 259, 441
Bst2UI	CCWGG	3 cut(s)	184, 624, 762
Bst4CI	ACNGT	5 cut(s)	286, 492, 527, 743, 863
Bst6I	CTCTTC	2 cut(s)	376, 727
BstBAI	YACGTR	1 cut(s)	295
BstBI	TTCGAA	1 cut(s)	936
BstC8I	GCNNGC	1 cut(s)	250
BstDEI	CTNAG	2 cut(s)	135, 888
BstENI	CCTNNNNNAGG	1 cut(s)	270
BstF5I	GGATG	2 cut(s)	262, 375
BstKTI	GATC	3 cut(s)	208, 262, 444
BstMBI	GATC	3 cut(s)	205, 259, 441
BstMWI	GCNNNNNNNGC	1 cut(s)	693
BstNI	CCWGG	3 cut(s)	184, 624, 762
BstSCI	CCNGG	3 cut(s)	182, 622, 760
BstSFI	CTRYAG	1 cut(s)	375
BstSNI	TACGTA	1 cut(s)	295
BstV2I	GAAGAC	2 cut(s)	72, 121
BstX2I	RGATCY	1 cut(s)	205
BstXI	CCANNNNNNTGG	1 cut(s)	657
BstYI	RGATCY	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	944
BtgZI	GCGATG	1 cut(s)	168
BtrI	CACGTC	1 cut(s)	173
BtsCI	GGATG	2 cut(s)	262, 375
BtsIMutI	CAGTG	2 cut(s)	371, 748
Cac8I	GCNNGC	1 cut(s)	250
Cfr10I	RCCGGY	1 cut(s)	847
Cfr13I	GGNCC	2 cut(s)	758, 863
CpoI	CGGWCCG	1 cut(s)	863
Csp6I	GTAC	2 cut(s)	296, 342
CspAI	ACCGGT	1 cut(s)	847
CspI	CGGWCCG	1 cut(s)	863
CviJI	RGCY	9 cut(s)	8, 139, 161, 248, 252, 629, 887, 933, 944
CviKI_1	RGCY	9 cut(s)	8, 139, 161, 248, 252, 629, 887, 933, 944
CviQI	GTAC	2 cut(s)	296, 342
DdeI	CTNAG	2 cut(s)	135, 888
DpnI	GATC	3 cut(s)	207, 261, 443
DpnII	GATC	3 cut(s)	205, 259, 441
DraIII	CACNNNGTG	1 cut(s)	743
EaeI	YGGCCR	1 cut(s)	942
Eam1104I	CTCTTC	2 cut(s)	376, 727
EarI	CTCTTC	2 cut(s)	376, 727
Ecl136II	GAGCTC	1 cut(s)	629
Eco105I	TACGTA	1 cut(s)	295
Eco24I	GRGCYC	1 cut(s)	631
Eco47I	GGWCC	2 cut(s)	758, 863
Eco53kI	GAGCTC	1 cut(s)	629
Eco57I	CTGAAG	2 cut(s)	125, 429
EcoICRI	GAGCTC	1 cut(s)	629
EcoNI	CCTNNNNNAGG	1 cut(s)	270
EcoRI	GAATTC	2 cut(s)	227, 564
EcoRII	CCWGG	3 cut(s)	182, 622, 760
EcoT38I	GRGCYC	1 cut(s)	631
FaiI	YATR	7 cut(s)	292, 349, 351, 506, 599, 899, 921
FalI	AAGNNNNNCTT	4 cut(s)	113, 145, 917, 949
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	3 cut(s)	9, 697, 700
FokI	GGATG	2 cut(s)	249, 382
FriOI	GRGCYC	1 cut(s)	631
Fsp4HI	GCNGC	3 cut(s)	9, 697, 700
FspBI	CTAG	3 cut(s)	221, 299, 680
GluI	GCNGC	3 cut(s)	9, 697, 700
GsuI	CTGGAG	2 cut(s)	228, 849
HaeIII	GGCC	1 cut(s)	944
HapII	CCGG	1 cut(s)	848
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	4 cut(s)	309, 387, 554, 653
HpaII	CCGG	1 cut(s)	848
HphI	GGTGA	5 cut(s)	308, 368, 564, 701, 854
Hpy166II	GTNNAC	4 cut(s)	421, 431, 580, 845
Hpy188I	TCNGA	5 cut(s)	62, 144, 400, 502, 758
Hpy188III	TCNNGA	6 cut(s)	108, 121, 214, 650, 680, 871
Hpy8I	GTNNAC	4 cut(s)	421, 431, 580, 845
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	2 cut(s)	143, 686
HpyCH4III	ACNGT	5 cut(s)	286, 492, 527, 743, 863
HpyCH4IV	ACGT	2 cut(s)	172, 294
HpyCH4V	TGCA	3 cut(s)	11, 377, 548
HpyF10VI	GCNNNNNNNGC	1 cut(s)	693
HpyF3I	CTNAG	2 cut(s)	135, 888
HpySE526I	ACGT	2 cut(s)	172, 294
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	3 cut(s)	205, 259, 441
LmnI	GCTCC	2 cut(s)	158, 626
LweI	GCATC	1 cut(s)	207
MaeI	CTAG	3 cut(s)	221, 299, 680
MaeII	ACGT	2 cut(s)	172, 294
MaeIII	GTNAC	3 cut(s)	286, 332, 957
MalI	GATC	3 cut(s)	207, 261, 443
MbiI	CCGCTC	1 cut(s)	687
MboI	GATC	3 cut(s)	205, 259, 441
MboII	GAAGA	9 cut(s)	72, 75, 121, 393, 422, 425, 714, 789, 920
MfeI	CAATTG	1 cut(s)	806
MflI	RGATCY	1 cut(s)	205
MhlI	GDGCHC	1 cut(s)	631
MlsI	TGGCCA	1 cut(s)	944
MluCI	AATT	4 cut(s)	25, 227, 564, 806
MluNI	TGGCCA	1 cut(s)	944
MmeI	TCCRAC	2 cut(s)	480, 643
Mox20I	TGGCCA	1 cut(s)	944
MroXI	GAANNNNTTC	2 cut(s)	128, 932
MscI	TGGCCA	1 cut(s)	944
MslI	CAYNNNNRTG	1 cut(s)	642
Msp20I	TGGCCA	1 cut(s)	944
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	1 cut(s)	848
MspR9I	CCNGG	3 cut(s)	184, 624, 762
MunI	CAATTG	1 cut(s)	806
Mva1269I	GAATGC	1 cut(s)	496
MvaI	CCWGG	3 cut(s)	184, 624, 762
MwoI	GCNNNNNNNGC	1 cut(s)	693
NdeII	GATC	3 cut(s)	205, 259, 441
NlaIV	GGNNCC	1 cut(s)	160
NmuCI	GTSAC	2 cut(s)	332, 957
NspV	TTCGAA	1 cut(s)	936
PcsI	WCGNNNNNNNCGW	1 cut(s)	867
PctI	GAATGC	1 cut(s)	496
PdmI	GAANNNNTTC	2 cut(s)	128, 932
PfeI	GAWTC	4 cut(s)	309, 387, 554, 653
PflMI	CCANNNNNTGG	1 cut(s)	951
PfoI	TCCNGGA	1 cut(s)	182
PinAI	ACCGGT	1 cut(s)	847
PkrI	GCNGC	3 cut(s)	10, 698, 701
Ppu21I	YACGTR	1 cut(s)	295
Psp124BI	GAGCTC	1 cut(s)	631
Psp6I	CCWGG	3 cut(s)	182, 622, 760
PspGI	CCWGG	3 cut(s)	182, 622, 760
PspN4I	GGNNCC	1 cut(s)	160
PspPI	GGNCC	2 cut(s)	758, 863
PstI	CTGCAG	1 cut(s)	379
PsuI	RGATCY	1 cut(s)	205
PvuII	CAGCTG	1 cut(s)	248
RsaI	GTAC	2 cut(s)	297, 343
RsaNI	GTAC	2 cut(s)	296, 342
RseI	CAYNNNNRTG	1 cut(s)	642
Rsr2I	CGGWCCG	1 cut(s)	863
RsrII	CGGWCCG	1 cut(s)	863
SacI	GAGCTC	1 cut(s)	631
SatI	GCNGC	3 cut(s)	9, 697, 700
Sau3AI	GATC	3 cut(s)	205, 259, 441
Sau96I	GGNCC	2 cut(s)	758, 863
ScrFI	CCNGG	3 cut(s)	184, 624, 762
SduI	GDGCHC	1 cut(s)	631
SfaNI	GCATC	1 cut(s)	207
SfcI	CTRYAG	1 cut(s)	375
SfuI	TTCGAA	1 cut(s)	936
SinI	GGWCC	2 cut(s)	758, 863
SmiMI	CAYNNNNRTG	1 cut(s)	642
SmlI	CTYRAG	1 cut(s)	882
SmoI	CTYRAG	1 cut(s)	882
SnaBI	TACGTA	1 cut(s)	295
Sse9I	AATT	4 cut(s)	25, 227, 564, 806
SsiI	CCGC	3 cut(s)	687, 696, 699
SspMI	CTAG	3 cut(s)	221, 299, 680
SstI	GAGCTC	1 cut(s)	631
StyD4I	CCNGG	3 cut(s)	182, 622, 760
TaaI	ACNGT	5 cut(s)	286, 492, 527, 743, 863
TaiI	ACGT	2 cut(s)	175, 297
TaqI	TCGA	3 cut(s)	606, 716, 936
TasI	AATT	4 cut(s)	25, 227, 564, 806
TauI	GCSGC	2 cut(s)	699, 702
TfiI	GAWTC	4 cut(s)	309, 387, 554, 653
TscAI	CASTG	2 cut(s)	371, 748
TseFI	GTSAC	2 cut(s)	332, 957
TseI	GCWGC	1 cut(s)	8
Tsp45I	GTSAC	2 cut(s)	332, 957
TspDTI	ATGAA	4 cut(s)	36, 240, 383, 890
TspGWI	ACGGA	2 cut(s)	223, 855
TspRI	CASTG	2 cut(s)	371, 748
Van91I	CCANNNNNTGG	1 cut(s)	951
VpaK11BI	GGWCC	2 cut(s)	758, 863
XagI	CCTNNNNNAGG	1 cut(s)	270
XapI	RAATTY	3 cut(s)	25, 227, 564
XbaI	TCTAGA	1 cut(s)	679
XmnI	GAANNNNTTC	2 cut(s)	128, 932
XspI	CTAG	3 cut(s)	221, 299, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.