MD04G1033300.v1.1

Belongs to the pirin family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
3758491 .. 3763450
4960 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1033300.v1.1.491

Sequence Viewer

Length: 978 bp
ATGAAAGCTATTTTCACAGCACCACACACCACCTCACTATTCCGCATAGCCACCAACCGCTTCAAAATCCCAGTCCCTTCCTTCATCCGAAGCACCATGTCTGATTCCGATCACCAATCCCTCCCTCCTTTTTCCTCCCCAAGAATGGTCGTCAAGAAGGTCCTCGCCAAGACCCAGCACGAAGGCGATGGTGCTGTTGCCAGGAGAGCCATTGGAAGCCGCGAGTTGAGGAACCTGGATCCTTTTCTGATGCTGGATCACTTTTCAGTGTCCCCTCCTGCTGGATTTCCTGACCACCCACACAGAGGTTTCGAGACTGTCACATACATGTTACAGGGAGCAATCACTCACCAAGACTTTGCAGGGCACAGGGGTACAATCCGGACTGGGGATGTGCAGTGGATGACGGCAGGCAGGGGAATAGTTCATTCAGAAATGCCTGAAGGAGAAGGACCCAACACTGGTTTGCAGCTTTGGATCAATTTAGCCCAGAAGGACAAAATGATTGAGCCAAGATACCAAGAACTCCTAAGCAAGGACATAACTAGGGCAGAGAAAGACGGGGTCGACGTCCGAGTTGTCGCCGGAGAAGCATTGGGAGTCAGCTCCCCAGTTTACACCAGAACACCAGCAATGTTTCTAGATTTCGTCTTAAAACCGAGAGCTCAACTTCATCACTGCATACCGGAAGCCTGGACTTCATTTGTGTACGTAATCGAAGGAGAAGGGGTGTTTGGATCAACTCATTCGTCAGCTCATCACGTCTTGGTTTTGGGTCCGGGAGACGGCCTAAGCGTGTGCAACAAGTCATCGGAGCCGTTGCGGTTTTTGTTGGCGGCAGGGCAACCCTTAAATGAACCAGTGGTTTCGCATGGCCCTTTTGTGATGAACACACAGGAGGAAATCTACCAAACTATTCAGGACTATCACCATGGCATGAATGGGTTTGAAATGGCCAAGACTTGGAGATCTCAATGA

Protein Analysis

326

Amino Acids

36.06

Weight (kDa)

6.79

Isoelectric Point (pI)

42.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pirin PF02678 67 - 160 2.7e-33 Pirin
Pirin_C PF05726 214 - 314 4.8e-30 Pirin C-terminal cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 573
AccB7I CCANNNNNTGG 1 cut(s) 963
AccI GTMKAC 1 cut(s) 567
AccII CGCG 1 cut(s) 222
AccIII TCCGGA 1 cut(s) 381
AciI CCGC 5 cut(s) 43, 58, 220, 823, 836
AclWI GGATC 5 cut(s) 233, 246, 264, 485, 745
AcoI YGGCCR 1 cut(s) 954
AcuI CTGAAG 1 cut(s) 462
AcyI GRCGYC 1 cut(s) 570
AfaI GTAC 2 cut(s) 376, 710
AfiI CCNNNNNNNGG 8 cut(s) 145, 281, 305, 388, 461, 535, 785, 963
AflIII ACRYGT 1 cut(s) 327
AgsI TTSAA 2 cut(s) 64, 950
AjiI CACGTC 1 cut(s) 763
AjnI CCWGG 3 cut(s) 200, 234, 692
AjuI GAANNNNNNNTTGG 2 cut(s) 717, 749
AluBI AGCT 5 cut(s) 8, 472, 606, 665, 755
AluI AGCT 5 cut(s) 8, 472, 606, 665, 755
Alw21I GWGCWC 1 cut(s) 667
Alw26I GTCTC 2 cut(s) 308, 777
AlwI GGATC 5 cut(s) 233, 246, 264, 485, 745
Aor13HI TCCGGA 1 cut(s) 381
AoxI GGCC 3 cut(s) 787, 874, 954
ApeKI GCWGC 1 cut(s) 469
ArsI GACNNNNNNTTYG 2 cut(s) 57, 89
AspS9I GGNCC 4 cut(s) 160, 452, 776, 875
AsuC2I CCSGG 1 cut(s) 780
AsuHPI GGTGA 3 cut(s) 104, 341, 920
AvaII GGWCC 3 cut(s) 160, 452, 776
BaeGI GKGCMC 1 cut(s) 369
BalI TGGCCA 1 cut(s) 956
BamHI GGATCC 1 cut(s) 238
BanII GRGCYC 1 cut(s) 667
Bbv12I GWGCWC 1 cut(s) 667
BbvI GCAGC 1 cut(s) 481
BccI CCATC 1 cut(s) 182
BceAI ACGGC 3 cut(s) 423, 802, 802
BciT130I CCWGG 3 cut(s) 202, 236, 694
BcnI CCSGG 1 cut(s) 780
BcoDI GTCTC 2 cut(s) 308, 777
BfaI CTAG 2 cut(s) 546, 641
BglII AGATCT 1 cut(s) 968
BisI GCNGC 3 cut(s) 220, 470, 837
BlsI GCNGC 3 cut(s) 221, 471, 838
Bme1390I CCNGG 4 cut(s) 202, 236, 694, 780
Bme18I GGWCC 3 cut(s) 160, 452, 776
BmgBI CACGTC 1 cut(s) 763
BmgT120I GGNCC 4 cut(s) 160, 452, 776, 875
BmiI GGNNCC 5 cut(s) 233, 240, 454, 777, 816
BmrFI CCNGG 4 cut(s) 202, 236, 694, 780
BmrI ACTGGG 3 cut(s) 65, 396, 605
BmsI GCATC 1 cut(s) 240
BmuI ACTGGG 3 cut(s) 65, 396, 605
Bpu10I CCTNAGC 2 cut(s) 530, 791
BpuMI CCSGG 1 cut(s) 780
BsaAI YACGTR 1 cut(s) 712
BsaBI GATNNNNATC 1 cut(s) 108
BsaHI GRCGYC 1 cut(s) 570
BsaJI CCNNGG 1 cut(s) 931
BsaWI WCCGGW 2 cut(s) 381, 685
BsaXI ACNNNNNCTCC 2 cut(s) 714, 744
Bsc4I CCNNNNNNNGG 8 cut(s) 145, 281, 305, 388, 461, 535, 785, 963
Bse1I ACTGG 5 cut(s) 71, 391, 466, 611, 860
Bse3DI GCAATG 1 cut(s) 639
Bse8I GATNNNNATC 1 cut(s) 108
BseAI TCCGGA 1 cut(s) 381
BseBI CCWGG 3 cut(s) 202, 236, 694
BseDI CCNNGG 1 cut(s) 931
BseGI GGATG 3 cut(s) 84, 397, 408
BseJI GATNNNNATC 1 cut(s) 108
BseLI CCNNNNNNNGG 8 cut(s) 145, 281, 305, 388, 461, 535, 785, 963
BseMI GCAATG 1 cut(s) 639
BseNI ACTGG 5 cut(s) 71, 391, 466, 611, 860
BseSI GKGCMC 1 cut(s) 369
BseXI GCAGC 1 cut(s) 481
BseYI CCCAGC 1 cut(s) 174
BsgI GTGCAG 1 cut(s) 416
Bsh1236I CGCG 1 cut(s) 222
BshFI GGCC 3 cut(s) 789, 876, 956
BsiHKAI GWGCWC 1 cut(s) 667
BsiSI CCGG 4 cut(s) 382, 585, 686, 779
BslFI GGGAC 2 cut(s) 59, 256
BslI CCNNNNNNNGG 8 cut(s) 145, 281, 305, 388, 461, 535, 785, 963
BsmAI GTCTC 2 cut(s) 308, 777
BsmBI CGTCTC 1 cut(s) 777
BsmFI GGGAC 2 cut(s) 59, 256
BsnI GGCC 3 cut(s) 789, 876, 956
Bsp1286I GDGCHC 2 cut(s) 369, 667
Bsp13I TCCGGA 1 cut(s) 381
Bsp143I GATC 6 cut(s) 109, 238, 256, 477, 737, 968
Bsp19I CCATGG 1 cut(s) 931
BspACI CCGC 5 cut(s) 43, 58, 220, 823, 836
BspANI GGCC 3 cut(s) 789, 876, 956
BspEI TCCGGA 1 cut(s) 381
BspFNI CGCG 1 cut(s) 222
BspLI GGNNCC 5 cut(s) 233, 240, 454, 777, 816
BspPI GGATC 5 cut(s) 233, 246, 264, 485, 745
BsrDI GCAATG 1 cut(s) 639
BsrI ACTGG 5 cut(s) 71, 391, 466, 611, 860
BssECI CCNNGG 1 cut(s) 931
BssMI GATC 6 cut(s) 109, 238, 256, 477, 737, 968
BssNI GRCGYC 1 cut(s) 570
BssT1I CCWWGG 1 cut(s) 931
Bst2UI CCWGG 3 cut(s) 202, 236, 694
Bst4CI ACNGT 1 cut(s) 319
BstACI GRCGYC 1 cut(s) 570
BstBAI YACGTR 1 cut(s) 712
BstC8I GCNNGC 1 cut(s) 412
BstDEI CTNAG 2 cut(s) 530, 791
BstDSI CCRYGG 1 cut(s) 931
BstENI CCTNNNNNAGG 1 cut(s) 533
BstF5I GGATG 3 cut(s) 84, 397, 408
BstFNI CGCG 1 cut(s) 222
BstKTI GATC 6 cut(s) 112, 241, 259, 480, 740, 971
BstMAI GTCTC 2 cut(s) 308, 777
BstMBI GATC 6 cut(s) 109, 238, 256, 477, 737, 968
BstMWI GCNNNNNNNGC 2 cut(s) 206, 590
BstNI CCWGG 3 cut(s) 202, 236, 694
BstNSI RCATGY 1 cut(s) 331
BstSCI CCNGG 4 cut(s) 200, 234, 692, 778
BstSLI GKGCMC 1 cut(s) 369
BstSNI TACGTA 1 cut(s) 712
BstUI CGCG 1 cut(s) 222
BstV1I GCAGC 1 cut(s) 481
BstX2I RGATCY 2 cut(s) 238, 968
BstYI RGATCY 2 cut(s) 238, 968
BsuRI GGCC 3 cut(s) 789, 876, 956
BtgI CCRYGG 1 cut(s) 931
BtgZI GCGATG 1 cut(s) 201
BtrI CACGTC 1 cut(s) 763
BtsCI GGATG 3 cut(s) 84, 397, 408
BtsI GCAGTG 2 cut(s) 404, 676
BtsIMutI CAGTG 5 cut(s) 273, 404, 459, 676, 867
Cac8I GCNNGC 1 cut(s) 412
Cfr13I GGNCC 4 cut(s) 160, 452, 776, 875
Csp6I GTAC 2 cut(s) 375, 709
CviAII CATG 5 cut(s) 97, 328, 872, 932, 937
CviQI GTAC 2 cut(s) 375, 709
DdeI CTNAG 2 cut(s) 530, 791
DpnI GATC 6 cut(s) 111, 240, 258, 479, 739, 970
DpnII GATC 6 cut(s) 109, 238, 256, 477, 737, 968
EaeI YGGCCR 1 cut(s) 954
Ecl136II GAGCTC 1 cut(s) 665
Eco105I TACGTA 1 cut(s) 712
Eco130I CCWWGG 1 cut(s) 931
Eco24I GRGCYC 1 cut(s) 667
Eco47I GGWCC 3 cut(s) 160, 452, 776
Eco53kI GAGCTC 1 cut(s) 665
Eco57I CTGAAG 1 cut(s) 462
EcoICRI GAGCTC 1 cut(s) 665
EcoNI CCTNNNNNAGG 1 cut(s) 533
EcoO109I RGGNCCY 2 cut(s) 160, 452
EcoRII CCWGG 3 cut(s) 200, 234, 692
EcoT14I CCWWGG 1 cut(s) 931
EcoT38I GRGCYC 1 cut(s) 667
ErhI CCWWGG 1 cut(s) 931
Esp3I CGTCTC 1 cut(s) 777
FaeI CATG 5 cut(s) 100, 331, 875, 935, 940
FaiI YATR 9 cut(s) 47, 98, 325, 329, 542, 683, 873, 933, 938
FaqI GGGAC 2 cut(s) 59, 256
FatI CATG 5 cut(s) 96, 327, 871, 931, 936
FblI GTMKAC 1 cut(s) 567
Fnu4HI GCNGC 3 cut(s) 220, 470, 837
FokI GGATG 3 cut(s) 71, 404, 415
FriOI GRGCYC 1 cut(s) 667
Fsp4HI GCNGC 3 cut(s) 220, 470, 837
FspBI CTAG 2 cut(s) 546, 641
GluI GCNGC 3 cut(s) 220, 470, 837
GsaI CCCAGC 1 cut(s) 178
HaeIII GGCC 3 cut(s) 789, 876, 956
HapII CCGG 4 cut(s) 382, 585, 686, 779
Hin1I GRCGYC 1 cut(s) 570
Hin1II CATG 5 cut(s) 100, 331, 875, 935, 940
HincII GTYRAC 1 cut(s) 568
HindII GTYRAC 1 cut(s) 568
HinfI GANTC 2 cut(s) 104, 600
HpaII CCGG 4 cut(s) 382, 585, 686, 779
HphI GGTGA 3 cut(s) 104, 341, 920
Hpy166II GTNNAC 3 cut(s) 568, 616, 709
Hpy188I TCNGA 7 cut(s) 89, 103, 109, 249, 433, 575, 814
Hpy188III TCNNGA 6 cut(s) 154, 290, 313, 382, 641, 920
Hpy8I GTNNAC 3 cut(s) 568, 616, 709
Hpy99I CGWCG 1 cut(s) 572
HpyAV CCTTC 9 cut(s) 87, 91, 151, 176, 437, 443, 487, 713, 719
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4IV ACGT 3 cut(s) 570, 711, 762
HpyCH4V TGCA 5 cut(s) 362, 397, 469, 681, 801
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 590
HpyF3I CTNAG 2 cut(s) 530, 791
HpySE526I ACGT 3 cut(s) 570, 711, 762
Hsp92I GRCGYC 1 cut(s) 570
Hsp92II CATG 5 cut(s) 100, 331, 875, 935, 940
Kpn2I TCCGGA 1 cut(s) 381
Kzo9I GATC 6 cut(s) 109, 238, 256, 477, 737, 968
LmnI GCTCC 3 cut(s) 338, 611, 814
Lsp1109I GCAGC 1 cut(s) 481
LweI GCATC 1 cut(s) 240
MaeI CTAG 2 cut(s) 546, 641
MaeII ACGT 3 cut(s) 570, 711, 762
MaeIII GTNAC 2 cut(s) 319, 330
MalI GATC 6 cut(s) 111, 240, 258, 479, 739, 970
MboI GATC 6 cut(s) 109, 238, 256, 477, 737, 968
MflI RGATCY 2 cut(s) 238, 968
MhlI GDGCHC 2 cut(s) 369, 667
MlsI TGGCCA 1 cut(s) 956
MluCI AATT 1 cut(s) 481
MluNI TGGCCA 1 cut(s) 956
MlyI GAGTC 1 cut(s) 609
MnlI CCTC 9 cut(s) 43, 131, 135, 145, 173, 222, 285, 299, 892
Mox20I TGGCCA 1 cut(s) 956
MroI TCCGGA 1 cut(s) 381
MscI TGGCCA 1 cut(s) 956
MseI TTAA 2 cut(s) 653, 851
MslI CAYNNNNRTG 1 cut(s) 326
Msp20I TGGCCA 1 cut(s) 956
MspI CCGG 4 cut(s) 382, 585, 686, 779
MspR9I CCNGG 4 cut(s) 202, 236, 694, 780
MvaI CCWGG 3 cut(s) 202, 236, 694
MvnI CGCG 1 cut(s) 222
MwoI GCNNNNNNNGC 2 cut(s) 206, 590
NciI CCSGG 1 cut(s) 780
NcoI CCATGG 1 cut(s) 931
NdeII GATC 6 cut(s) 109, 238, 256, 477, 737, 968
NlaIII CATG 5 cut(s) 100, 331, 875, 935, 940
NlaIV GGNNCC 5 cut(s) 233, 240, 454, 777, 816
NmuCI GTSAC 1 cut(s) 319
NspI RCATGY 1 cut(s) 331
PciI ACATGT 1 cut(s) 327
PcsI WCGNNNNNNNCGW 2 cut(s) 567, 792
PfeI GAWTC 1 cut(s) 104
PflFI GACNNNGTC 1 cut(s) 563
PflMI CCANNNNNTGG 1 cut(s) 963
PfoI TCCNGGA 1 cut(s) 778
PkrI GCNGC 3 cut(s) 221, 471, 838
PleI GAGTC 1 cut(s) 608
PpsI GAGTC 1 cut(s) 608
Ppu21I YACGTR 1 cut(s) 712
PpuMI RGGWCCY 2 cut(s) 160, 452
PscI ACATGT 1 cut(s) 327
Psp124BI GAGCTC 1 cut(s) 667
Psp5II RGGWCCY 2 cut(s) 160, 452
Psp6I CCWGG 3 cut(s) 200, 234, 692
PspFI CCCAGC 1 cut(s) 174
PspGI CCWGG 3 cut(s) 200, 234, 692
PspN4I GGNNCC 5 cut(s) 233, 240, 454, 777, 816
PspPI GGNCC 4 cut(s) 160, 452, 776, 875
PspPPI RGGWCCY 2 cut(s) 160, 452
PsuI RGATCY 2 cut(s) 238, 968
PsyI GACNNNGTC 1 cut(s) 563
RsaI GTAC 2 cut(s) 376, 710
RsaNI GTAC 2 cut(s) 375, 709
RseI CAYNNNNRTG 1 cut(s) 326
SacI GAGCTC 1 cut(s) 667
SalI GTCGAC 1 cut(s) 566
SaqAI TTAA 2 cut(s) 653, 851
SatI GCNGC 3 cut(s) 220, 470, 837
Sau3AI GATC 6 cut(s) 109, 238, 256, 477, 737, 968
Sau96I GGNCC 4 cut(s) 160, 452, 776, 875
SchI GAGTC 1 cut(s) 609
ScrFI CCNGG 4 cut(s) 202, 236, 694, 780
SduI GDGCHC 2 cut(s) 369, 667
SfaNI GCATC 1 cut(s) 240
SinI GGWCC 3 cut(s) 160, 452, 776
SmiMI CAYNNNNRTG 1 cut(s) 326
SnaBI TACGTA 1 cut(s) 712
Sse9I AATT 1 cut(s) 481
SsiI CCGC 5 cut(s) 43, 58, 220, 823, 836
SspMI CTAG 2 cut(s) 546, 641
SstI GAGCTC 1 cut(s) 667
StyD4I CCNGG 4 cut(s) 200, 234, 692, 778
StyI CCWWGG 1 cut(s) 931
TaaI ACNGT 1 cut(s) 319
TaiI ACGT 3 cut(s) 573, 714, 765
TaqI TCGA 3 cut(s) 312, 567, 717
TasI AATT 1 cut(s) 481
TauI GCSGC 2 cut(s) 222, 839
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 2 cut(s) 653, 851
Tru9I TTAA 2 cut(s) 653, 851
TscAI CASTG 5 cut(s) 273, 404, 466, 683, 867
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 1 cut(s) 469
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 8 cut(s) 17, 73, 416, 662, 690, 870, 902, 953
TspRI CASTG 5 cut(s) 273, 404, 466, 683, 867
Tth111I GACNNNGTC 1 cut(s) 563
Van91I CCANNNNNTGG 1 cut(s) 963
VpaK11BI GGWCC 3 cut(s) 160, 452, 776
XagI CCTNNNNNAGG 1 cut(s) 533
XbaI TCTAGA 1 cut(s) 640
XceI RCATGY 1 cut(s) 331
XcmI CCANNNNNNNNNTGG 1 cut(s) 938
XmiI GTMKAC 1 cut(s) 567
XspI CTAG 2 cut(s) 546, 641
ZraI GACGTC 1 cut(s) 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.