Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0007048

Physical Location & Seq

Genomic Coordinates Reverse (-)

38774255 .. 38777832

Gene Structure 3578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG153500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGCGTTTGAGAGCTATAGCAAATTTTGCACGCAATAGCTTACTCTTCACTGCAAAAACCACCACCACCACCACCACCACCAGAAGCAAGAACCATTTGAATTTCAGGGCCCCCTTCTTCATCAGAAACCACACCATGTCTGGTTCAGATCAATCCCCTTCTTTCGACACACCCAGAATGGTGGTCAAGAAGGTCCTGGCCAAGTCCCAGAGTGAGGGTGATGGAGCTGTTGTCAGAAGAGCCATTGGAATCTCTGAGTTGAGGAACCTGGATCCGTTTCTCATGCTAGATGACTTTACAGTGTCCCCTCCTGCCGGATTTCCAGATCATCCACATAGAGGATTCGAAACTGTCACATATGTGCTACAGGGAGGCATCACTCACCAAGACTTTGCAGGGCACAAGGGTACAATTGGAGCTGGAGATGTGCAGTGGATGACCGCAGGCAGGGGAATAGTTCACTCTGAGATGCCTGCAGGAGCAGGACGCAACAATGGTTTGCAGCTTTGGATCAATTTAGCCCGCAAAGACAAAATGGTTGAGCCTAGATACCAAGAACTCCTAAGCAAGGAGATAAAGTGGGCAGAGAAAGATGGAGTTGAAGTTCGAGTGATAGCAGGAGAAACAATGGGAGTGAGCTCTCCTGTTTATACCCGAACACCAACATTTTTCTTTGACTTCACCCTTAAGCCTAAAGCTATTTTGCATCAAAGCATACCAGAAAGTTGGACCTCCTTTGTTTACATTATTGAAGGAGAAGGATTTTTTGGGTCAGCGCATGCATCAGCTCATCATATTCTGGTTCTGGGTCCTGGAGATGGCGCAAGCGTATGCAACAAGTCATCGGAGCCGCTGAGGTTTGTGTTGATCGGAGGGCAGCCAATAAATGAACCAGTGGTTCAGCATGGACCTTTTGTGATGAACACACAAGCTGAAATCGAACAAACCATTAAGGACTATCATTATGGCCAGAATGGGTTTGAAAGTGCCAAGTCTTGGCGGTCTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009785 GO:0009892 GO:0009987 GO:0010033 GO:0010466 GO:0010605 GO:0016020 GO:0019222 GO:0023052 GO:0030162 GO:0030234 GO:0030414 GO:0030522 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032870 GO:0033993 GO:0042221 GO:0042742 GO:0043086 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051704 GO:0051707 GO:0051716 GO:0052547 GO:0060255 GO:0061134 GO:0065007 GO:0065009 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0071944 GO:0080090 GO:0097305 GO:0097306 GO:0098542 GO:0098772 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pirin Pirin_C

Protein Analysis

336

Amino Acids

37.15

Weight (kDa)

8.89

Isoelectric Point (pI)

47.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pirin	PF02678	78 - 171	1.3e-31	Pirin
Pirin_C	PF05726	225 - 325	9e-32	Pirin C-terminal cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43120 AT2G43120 AT3G59220 AT3G59260
fragaria_vesca	FvH4_4g11770 FvH4_4g11770 FvH4_4g11770 FvH4_4g11770
malus_domestica	MD04G1033300.v1.1
prunus_persica	Prupe.1G181100_v2.0.a1
pyrus_communis	pycom04g02740 pycom04g02780
rosa_chinensis	RchiOBHm_Chr4g0409021
rosa_laevigata	RLG00000008595
rosa_multiflora	Rmu_sc0000121.1_g000003 Rmu_sc0006766.1_g000003 Rmu_sc0017774.1_g000001 Rmu_sc0022473.1_g000002 Rmu_sc0026065.1_g000003
rosa_roxburghii	Rroxscaffold_5G00353500
rosa_rugosa	Rorug04G0089800
rosa_samantha	Rh4AG153500 Rh4BG151600 Rh4CG162000 Rh4DG146900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	996
AciI	CCGC	4 cut(s)	441, 523, 851, 1000
AclWI	GGATC	3 cut(s)	266, 279, 518
AcoI	YGGCCR	2 cut(s)	198, 967
AcsI	RAATTY	2 cut(s)	22, 100
AfaI	GTAC	1 cut(s)	409
AfiI	CCNNNNNNNGG	7 cut(s)	214, 314, 338, 447, 568, 818, 996
AflII	CTTAAG	1 cut(s)	686
AgsI	TTSAA	4 cut(s)	100, 602, 752, 983
AjnI	CCWGG	3 cut(s)	195, 267, 811
AjuI	GAANNNNNNNTTGG	2 cut(s)	750, 782
AleI	CACNNNNGTG	1 cut(s)	359
AloI	GAACNNNNNNTCC	2 cut(s)	588, 620
AluBI	AGCT	9 cut(s)	14, 39, 227, 419, 505, 639, 698, 788, 932
AluI	AGCT	9 cut(s)	14, 39, 227, 419, 505, 639, 698, 788, 932
Alw21I	GWGCWC	1 cut(s)	641
AlwI	GGATC	3 cut(s)	266, 279, 518
AoxI	GGCC	3 cut(s)	108, 198, 967
ApaI	GGGCCC	1 cut(s)	112
ApeKI	GCWGC	2 cut(s)	502, 877
ApoI	RAATTY	2 cut(s)	22, 100
AspLEI	GCGC	2 cut(s)	778, 824
AspS9I	GGNCC	6 cut(s)	108, 109, 193, 729, 809, 908
AsuHPI	GGTGA	3 cut(s)	230, 374, 673
AsuII	TTCGAA	1 cut(s)	345
AvaII	GGWCC	4 cut(s)	193, 729, 809, 908
BaeGI	GKGCMC	2 cut(s)	112, 402
BalI	TGGCCA	2 cut(s)	200, 969
BamHI	GGATCC	1 cut(s)	271
BanII	GRGCYC	2 cut(s)	112, 641
Bbv12I	GWGCWC	1 cut(s)	641
BbvCI	CCTCAGC	1 cut(s)	854
BbvI	GCAGC	2 cut(s)	514, 889
BccI	CCATC	3 cut(s)	215, 587, 812
BciT130I	CCWGG	3 cut(s)	197, 269, 813
BfaI	CTAG	2 cut(s)	287, 546
BfmI	CTRYAG	3 cut(s)	15, 365, 474
BfrI	CTTAAG	1 cut(s)	686
BisI	GCNGC	3 cut(s)	503, 851, 878
BlsI	GCNGC	3 cut(s)	504, 852, 879
Bme1390I	CCNGG	3 cut(s)	197, 269, 813
Bme18I	GGWCC	4 cut(s)	193, 729, 809, 908
BmgT120I	GGNCC	6 cut(s)	108, 109, 193, 729, 809, 908
BmiI	GGNNCC	6 cut(s)	110, 111, 266, 273, 810, 849
BmrFI	CCNGG	3 cut(s)	197, 269, 813
BmsI	GCATC	4 cut(s)	384, 459, 715, 791
BpmI	CTGGAG	2 cut(s)	441, 834
Bpu10I	CCTNAGC	2 cut(s)	563, 854
Bpu14I	TTCGAA	1 cut(s)	345
BsaXI	ACNNNNNCTCC	6 cut(s)	216, 246, 563, 588, 593, 618
Bsc4I	CCNNNNNNNGG	7 cut(s)	214, 314, 338, 447, 568, 818, 996
Bse1I	ACTGG	1 cut(s)	893
BseBI	CCWGG	3 cut(s)	197, 269, 813
BseGI	GGATG	2 cut(s)	328, 441
BseLI	CCNNNNNNNGG	7 cut(s)	214, 314, 338, 447, 568, 818, 996
BseMII	CTCAG	3 cut(s)	246, 456, 845
BseNI	ACTGG	1 cut(s)	893
BseSI	GKGCMC	2 cut(s)	112, 402
BseXI	GCAGC	2 cut(s)	514, 889
BsgI	GTGCAG	1 cut(s)	449
BshFI	GGCC	3 cut(s)	110, 200, 969
BsiHKAI	GWGCWC	1 cut(s)	641
BsiSI	CCGG	1 cut(s)	315
BslFI	GGGAC	2 cut(s)	190, 289
BslI	CCNNNNNNNGG	7 cut(s)	214, 314, 338, 447, 568, 818, 996
BsmFI	GGGAC	2 cut(s)	190, 289
BsnI	GGCC	3 cut(s)	110, 200, 969
Bsp119I	TTCGAA	1 cut(s)	345
Bsp120I	GGGCCC	1 cut(s)	108
Bsp1286I	GDGCHC	3 cut(s)	112, 402, 641
Bsp143I	GATC	5 cut(s)	148, 271, 325, 510, 867
BspACI	CCGC	4 cut(s)	441, 523, 851, 1000
BspANI	GGCC	3 cut(s)	110, 200, 969
BspCNI	CTCAG	3 cut(s)	247, 457, 846
BspLI	GGNNCC	6 cut(s)	110, 111, 266, 273, 810, 849
BspMAI	CTGCAG	1 cut(s)	478
BspPI	GGATC	3 cut(s)	266, 279, 518
BspQI	GCTCTTC	1 cut(s)	232
BspT104I	TTCGAA	1 cut(s)	345
BspTI	CTTAAG	1 cut(s)	686
BsrI	ACTGG	1 cut(s)	893
BssMI	GATC	5 cut(s)	148, 271, 325, 510, 867
Bst2UI	CCWGG	3 cut(s)	197, 269, 813
Bst4CI	ACNGT	2 cut(s)	301, 352
Bst6I	CTCTTC	2 cut(s)	50, 232
BstAFI	CTTAAG	1 cut(s)	686
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstBI	TTCGAA	1 cut(s)	345
BstC8I	GCNNGC	6 cut(s)	31, 445, 474, 523, 780, 826
BstDEI	CTNAG	4 cut(s)	255, 465, 563, 854
BstENI	CCTNNNNNAGG	1 cut(s)	566
BstF5I	GGATG	2 cut(s)	328, 441
BstHHI	GCGC	2 cut(s)	778, 824
BstKTI	GATC	5 cut(s)	151, 274, 328, 513, 870
BstMBI	GATC	5 cut(s)	148, 271, 325, 510, 867
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNI	CCWGG	3 cut(s)	197, 269, 813
BstNSI	RCATGY	1 cut(s)	782
BstSCI	CCNGG	3 cut(s)	195, 267, 811
BstSFI	CTRYAG	3 cut(s)	15, 365, 474
BstSLI	GKGCMC	2 cut(s)	112, 402
BstV1I	GCAGC	2 cut(s)	514, 889
BstX2I	RGATCY	1 cut(s)	271
BstXI	CCANNNNNNTGG	2 cut(s)	181, 726
BstYI	RGATCY	1 cut(s)	271
BsuRI	GGCC	3 cut(s)	110, 200, 969
BtsCI	GGATG	2 cut(s)	328, 441
BtsI	GCAGTG	2 cut(s)	48, 437
BtsIMutI	CAGTG	4 cut(s)	48, 306, 437, 900
Cac8I	GCNNGC	6 cut(s)	31, 445, 474, 523, 780, 826
CfoI	GCGC	2 cut(s)	778, 824
Cfr13I	GGNCC	6 cut(s)	108, 109, 193, 729, 809, 908
CseI	GACGC	1 cut(s)	495
Csp6I	GTAC	1 cut(s)	408
CviAII	CATG	4 cut(s)	136, 283, 779, 905
CviQI	GTAC	1 cut(s)	408
DdeI	CTNAG	4 cut(s)	255, 465, 563, 854
DpnI	GATC	5 cut(s)	150, 273, 327, 512, 869
DpnII	GATC	5 cut(s)	148, 271, 325, 510, 867
EaeI	YGGCCR	2 cut(s)	198, 967
Eam1104I	CTCTTC	2 cut(s)	50, 232
EarI	CTCTTC	2 cut(s)	50, 232
Ecl136II	GAGCTC	1 cut(s)	639
Eco24I	GRGCYC	2 cut(s)	112, 641
Eco47I	GGWCC	4 cut(s)	193, 729, 809, 908
Eco53kI	GAGCTC	1 cut(s)	639
EcoICRI	GAGCTC	1 cut(s)	639
EcoNI	CCTNNNNNAGG	1 cut(s)	566
EcoO109I	RGGNCCY	4 cut(s)	108, 109, 193, 809
EcoRII	CCWGG	3 cut(s)	195, 267, 811
EcoT22I	ATGCAT	1 cut(s)	784
EcoT38I	GRGCYC	2 cut(s)	112, 641
FaeI	CATG	4 cut(s)	139, 286, 782, 908
FaqI	GGGAC	2 cut(s)	190, 289
FatI	CATG	4 cut(s)	135, 282, 778, 904
FauI	CCCGC	1 cut(s)	530
FauNDI	CATATG	1 cut(s)	358
Fnu4HI	GCNGC	3 cut(s)	503, 851, 878
FokI	GGATG	2 cut(s)	315, 448
FriOI	GRGCYC	2 cut(s)	112, 641
Fsp4HI	GCNGC	3 cut(s)	503, 851, 878
FspBI	CTAG	2 cut(s)	287, 546
GlaI	GCGC	2 cut(s)	777, 823
GluI	GCNGC	3 cut(s)	503, 851, 878
GsuI	CTGGAG	2 cut(s)	441, 834
HaeIII	GGCC	3 cut(s)	110, 200, 969
HapII	CCGG	1 cut(s)	315
HgaI	GACGC	1 cut(s)	495
HhaI	GCGC	2 cut(s)	778, 824
Hin1II	CATG	4 cut(s)	139, 286, 782, 908
Hin6I	GCGC	2 cut(s)	776, 822
HinP1I	GCGC	2 cut(s)	776, 822
HinfI	GANTC	2 cut(s)	249, 342
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	3 cut(s)	230, 374, 673
Hpy166II	GTNNAC	2 cut(s)	460, 742
Hpy188I	TCNGA	7 cut(s)	125, 148, 236, 256, 466, 847, 872
Hpy188III	TCNNGA	2 cut(s)	187, 323
Hpy8I	GTNNAC	2 cut(s)	460, 742
HpyAV	CCTTC	5 cut(s)	124, 168, 184, 746, 752
HpyCH4III	ACNGT	2 cut(s)	301, 352
HpyCH4V	TGCA	9 cut(s)	29, 53, 395, 430, 476, 502, 706, 782, 834
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	4 cut(s)	255, 465, 563, 854
Hsp92II	CATG	4 cut(s)	139, 286, 782, 908
HspAI	GCGC	2 cut(s)	776, 822
Kzo9I	GATC	5 cut(s)	148, 271, 325, 510, 867
LguI	GCTCTTC	1 cut(s)	232
LmnI	GCTCC	4 cut(s)	224, 416, 479, 847
Lsp1109I	GCAGC	2 cut(s)	514, 889
LweI	GCATC	4 cut(s)	384, 459, 715, 791
MaeI	CTAG	2 cut(s)	287, 546
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	5 cut(s)	150, 273, 327, 512, 869
MboI	GATC	5 cut(s)	148, 271, 325, 510, 867
MboII	GAAGA	3 cut(s)	37, 109, 249
MfeI	CAATTG	1 cut(s)	411
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	3 cut(s)	112, 402, 641
MlsI	TGGCCA	2 cut(s)	200, 969
MluCI	AATT	4 cut(s)	22, 100, 411, 514
MluNI	TGGCCA	2 cut(s)	200, 969
MmeI	TCCRAC	1 cut(s)	707
MnlI	CCTC	8 cut(s)	208, 255, 318, 332, 365, 742, 849, 866
Mox20I	TGGCCA	2 cut(s)	200, 969
Mph1103I	ATGCAT	1 cut(s)	784
MscI	TGGCCA	2 cut(s)	200, 969
MseI	TTAA	2 cut(s)	687, 951
MslI	CAYNNNNRTG	1 cut(s)	359
Msp20I	TGGCCA	2 cut(s)	200, 969
MspA1I	CMGCKG	1 cut(s)	853
MspCI	CTTAAG	1 cut(s)	686
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	3 cut(s)	197, 269, 813
MunI	CAATTG	1 cut(s)	411
MvaI	CCWGG	3 cut(s)	197, 269, 813
MwoI	GCNNNNNNNGC	1 cut(s)	26
NdeI	CATATG	1 cut(s)	358
NdeII	GATC	5 cut(s)	148, 271, 325, 510, 867
NlaIII	CATG	4 cut(s)	139, 286, 782, 908
NlaIV	GGNNCC	6 cut(s)	110, 111, 266, 273, 810, 849
NmuCI	GTSAC	1 cut(s)	352
NsiI	ATGCAT	1 cut(s)	784
NspI	RCATGY	1 cut(s)	782
NspV	TTCGAA	1 cut(s)	345
OliI	CACNNNNGTG	1 cut(s)	359
PaeI	GCATGC	1 cut(s)	782
PciSI	GCTCTTC	1 cut(s)	232
PfeI	GAWTC	2 cut(s)	249, 342
PflMI	CCANNNNNTGG	1 cut(s)	996
PfoI	TCCNGGA	1 cut(s)	811
PkrI	GCNGC	3 cut(s)	504, 852, 879
PpuMI	RGGWCCY	2 cut(s)	193, 809
Psp124BI	GAGCTC	1 cut(s)	641
Psp5II	RGGWCCY	2 cut(s)	193, 809
Psp6I	CCWGG	3 cut(s)	195, 267, 811
PspGI	CCWGG	3 cut(s)	195, 267, 811
PspN4I	GGNNCC	6 cut(s)	110, 111, 266, 273, 810, 849
PspOMI	GGGCCC	1 cut(s)	108
PspPI	GGNCC	6 cut(s)	108, 109, 193, 729, 809, 908
PspPPI	RGGWCCY	2 cut(s)	193, 809
PstI	CTGCAG	1 cut(s)	478
PsuI	RGATCY	1 cut(s)	271
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
RseI	CAYNNNNRTG	1 cut(s)	359
SacI	GAGCTC	1 cut(s)	641
SapI	GCTCTTC	1 cut(s)	232
SaqAI	TTAA	2 cut(s)	687, 951
SatI	GCNGC	3 cut(s)	503, 851, 878
Sau3AI	GATC	5 cut(s)	148, 271, 325, 510, 867
Sau96I	GGNCC	6 cut(s)	108, 109, 193, 729, 809, 908
SbfI	CCTGCAGG	1 cut(s)	478
ScrFI	CCNGG	3 cut(s)	197, 269, 813
SdaI	CCTGCAGG	1 cut(s)	478
SduI	GDGCHC	3 cut(s)	112, 402, 641
SfaNI	GCATC	4 cut(s)	384, 459, 715, 791
SfcI	CTRYAG	3 cut(s)	15, 365, 474
SfuI	TTCGAA	1 cut(s)	345
SinI	GGWCC	4 cut(s)	193, 729, 809, 908
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	686
SmoI	CTYRAG	1 cut(s)	686
SphI	GCATGC	1 cut(s)	782
Sse8387I	CCTGCAGG	1 cut(s)	478
Sse9I	AATT	4 cut(s)	22, 100, 411, 514
SsiI	CCGC	4 cut(s)	441, 523, 851, 1000
SspMI	CTAG	2 cut(s)	287, 546
SstI	GAGCTC	1 cut(s)	641
StyD4I	CCNGG	3 cut(s)	195, 267, 811
TaaI	ACNGT	2 cut(s)	301, 352
TaqI	TCGA	4 cut(s)	165, 345, 607, 939
TasI	AATT	4 cut(s)	22, 100, 411, 514
TauI	GCSGC	1 cut(s)	853
TfiI	GAWTC	2 cut(s)	249, 342
Tru1I	TTAA	2 cut(s)	687, 951
Tru9I	TTAA	2 cut(s)	687, 951
TscAI	CASTG	4 cut(s)	55, 306, 437, 900
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	2 cut(s)	502, 877
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	3 cut(s)	109, 903, 935
TspGWI	ACGGA	1 cut(s)	264
TspRI	CASTG	4 cut(s)	55, 306, 437, 900
Van91I	CCANNNNNTGG	1 cut(s)	996
Vha464I	CTTAAG	1 cut(s)	686
VpaK11BI	GGWCC	4 cut(s)	193, 729, 809, 908
XagI	CCTNNNNNAGG	1 cut(s)	566
XapI	RAATTY	2 cut(s)	22, 100
XceI	RCATGY	1 cut(s)	782
XcmI	CCANNNNNNNNNTGG	1 cut(s)	137
XspI	CTAG	2 cut(s)	287, 546
Zsp2I	ATGCAT	1 cut(s)	784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.