Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006766.1

Orthogroup ID

OG0007048

Physical Location & Seq

Genomic Coordinates Forward (+)

9144 .. 9527

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006766.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgggagtgagctctcctgtttatacccgaacaccaacatttttctttgacttcacccttaggcctaaagctattttgcatcaaagcataccagaaagttggacctcctttgtttacattattgaaggagaaggattttttgggtcagcgcatgcatcagctcatcatattctggttctgggtcctggagatggcgtaagtgtatgcaacaagtcatcggagccgctaaggtttgtgttgatcggagggcagccaataaatgaaccagtggttcagcatgggccttttgtgatgaacacacaagctgaaatcgaacaaaccattaaggactatcattatggccaaaatgggtttgaaagtgccaagtcttggcggtctcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009785 GO:0009892 GO:0009987 GO:0010033 GO:0010466 GO:0010605 GO:0016020 GO:0019222 GO:0023052 GO:0030162 GO:0030234 GO:0030414 GO:0030522 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032870 GO:0033993 GO:0042221 GO:0042742 GO:0043086 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051704 GO:0051707 GO:0051716 GO:0052547 GO:0060255 GO:0061134 GO:0065007 GO:0065009 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0071944 GO:0080090 GO:0097305 GO:0097306 GO:0098542 GO:0098772 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pirin Pirin_C

Protein Analysis

127

Amino Acids

14.09

Weight (kDa)

6.02

Isoelectric Point (pI)

59.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43120 AT2G43120 AT3G59220 AT3G59260
fragaria_vesca	FvH4_4g11770 FvH4_4g11770 FvH4_4g11770 FvH4_4g11770
malus_domestica	MD04G1033300.v1.1
prunus_persica	Prupe.1G181100_v2.0.a1
pyrus_communis	pycom04g02740 pycom04g02780
rosa_chinensis	RchiOBHm_Chr4g0409021
rosa_laevigata	RLG00000008595
rosa_multiflora	Rmu_sc0000121.1_g000003 Rmu_sc0006766.1_g000003 Rmu_sc0017774.1_g000001 Rmu_sc0022473.1_g000002 Rmu_sc0026065.1_g000003
rosa_roxburghii	Rroxscaffold_5G00353500
rosa_rugosa	Rorug04G0089800
rosa_samantha	Rh4AG153500 Rh4BG151600 Rh4CG162000 Rh4DG146900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	369
AciI	CCGC	2 cut(s)	224, 373
AcoI	YGGCCR	1 cut(s)	340
AfiI	CCNNNNNNNGG	2 cut(s)	191, 369
AgsI	TTSAA	2 cut(s)	125, 356
AjnI	CCWGG	1 cut(s)	184
AjuI	GAANNNNNNNTTGG	2 cut(s)	123, 155
AluBI	AGCT	4 cut(s)	12, 71, 161, 305
AluI	AGCT	4 cut(s)	12, 71, 161, 305
Alw21I	GWGCWC	1 cut(s)	14
AoxI	GGCC	3 cut(s)	62, 281, 340
ApeKI	GCWGC	1 cut(s)	250
AspLEI	GCGC	1 cut(s)	151
AspS9I	GGNCC	3 cut(s)	102, 182, 281
AsuHPI	GGTGA	1 cut(s)	46
AvaII	GGWCC	2 cut(s)	102, 182
AxyI	CCTNAGG	1 cut(s)	59
BalI	TGGCCA	1 cut(s)	342
BanII	GRGCYC	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	14
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	1 cut(s)	185
BciT130I	CCWGG	1 cut(s)	186
BisI	GCNGC	2 cut(s)	224, 251
BlsI	GCNGC	2 cut(s)	225, 252
Bme1390I	CCNGG	1 cut(s)	186
Bme18I	GGWCC	2 cut(s)	102, 182
BmgT120I	GGNCC	3 cut(s)	102, 182, 281
BmiI	GGNNCC	2 cut(s)	183, 222
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	2 cut(s)	88, 164
BpmI	CTGGAG	1 cut(s)	207
Bpu10I	CCTNAGC	1 cut(s)	227
BsaXI	ACNNNNNCTCC	2 cut(s)	180, 210
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 369
Bse1I	ACTGG	1 cut(s)	266
Bse21I	CCTNAGG	1 cut(s)	59
BseBI	CCWGG	1 cut(s)	186
BseLI	CCNNNNNNNGG	2 cut(s)	191, 369
BseNI	ACTGG	1 cut(s)	266
BseXI	GCAGC	1 cut(s)	262
BshFI	GGCC	3 cut(s)	64, 283, 342
BsiHKAI	GWGCWC	1 cut(s)	14
BslI	CCNNNNNNNGG	2 cut(s)	191, 369
BsnI	GGCC	3 cut(s)	64, 283, 342
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp143I	GATC	1 cut(s)	240
BspACI	CCGC	2 cut(s)	224, 373
BspANI	GGCC	3 cut(s)	64, 283, 342
BspLI	GGNNCC	2 cut(s)	183, 222
BsrI	ACTGG	1 cut(s)	266
BssMI	GATC	1 cut(s)	240
Bst2UI	CCWGG	1 cut(s)	186
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	2 cut(s)	59, 227
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	1 cut(s)	243
BstMBI	GATC	1 cut(s)	240
BstNI	CCWGG	1 cut(s)	186
BstNSI	RCATGY	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	184
BstV1I	GCAGC	1 cut(s)	262
BstXI	CCANNNNNNTGG	1 cut(s)	99
Bsu36I	CCTNAGG	1 cut(s)	59
BsuRI	GGCC	3 cut(s)	64, 283, 342
BtsIMutI	CAGTG	1 cut(s)	273
Cac8I	GCNNGC	1 cut(s)	153
CfoI	GCGC	1 cut(s)	151
Cfr13I	GGNCC	3 cut(s)	102, 182, 281
CviAII	CATG	2 cut(s)	152, 278
CviJI	RGCY	9 cut(s)	12, 64, 71, 161, 223, 253, 283, 305, 342
CviKI_1	RGCY	9 cut(s)	12, 64, 71, 161, 223, 253, 283, 305, 342
DdeI	CTNAG	2 cut(s)	59, 227
DpnI	GATC	1 cut(s)	242
DpnII	GATC	1 cut(s)	240
EaeI	YGGCCR	1 cut(s)	340
Ecl136II	GAGCTC	1 cut(s)	12
Eco147I	AGGCCT	1 cut(s)	64
Eco24I	GRGCYC	1 cut(s)	14
Eco47I	GGWCC	2 cut(s)	102, 182
Eco53kI	GAGCTC	1 cut(s)	12
Eco81I	CCTNAGG	1 cut(s)	59
EcoICRI	GAGCTC	1 cut(s)	12
EcoO109I	RGGNCCY	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	184
EcoT22I	ATGCAT	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	14
FaeI	CATG	2 cut(s)	155, 281
FaiI	YATR	7 cut(s)	24, 89, 153, 168, 205, 279, 339
FatI	CATG	2 cut(s)	151, 277
Fnu4HI	GCNGC	2 cut(s)	224, 251
FriOI	GRGCYC	1 cut(s)	14
Fsp4HI	GCNGC	2 cut(s)	224, 251
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	2 cut(s)	224, 251
GsuI	CTGGAG	1 cut(s)	207
HaeIII	GGCC	3 cut(s)	64, 283, 342
HhaI	GCGC	1 cut(s)	151
Hin1II	CATG	2 cut(s)	155, 281
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	2 cut(s)	220, 245
Hpy8I	GTNNAC	1 cut(s)	115
HpyAV	CCTTC	2 cut(s)	119, 125
HpyCH4V	TGCA	3 cut(s)	79, 155, 207
HpyF3I	CTNAG	2 cut(s)	59, 227
Hsp92II	CATG	2 cut(s)	155, 281
HspAI	GCGC	1 cut(s)	149
Kzo9I	GATC	1 cut(s)	240
LmnI	GCTCC	1 cut(s)	220
LpnPI	CCDG	7 cut(s)	30, 105, 158, 164, 171, 198, 279
Lsp1109I	GCAGC	1 cut(s)	262
LweI	GCATC	2 cut(s)	88, 164
MalI	GATC	1 cut(s)	242
MboI	GATC	1 cut(s)	240
MhlI	GDGCHC	1 cut(s)	14
MlsI	TGGCCA	1 cut(s)	342
MluNI	TGGCCA	1 cut(s)	342
MmeI	TCCRAC	1 cut(s)	80
MnlI	CCTC	2 cut(s)	115, 239
Mox20I	TGGCCA	1 cut(s)	342
Mph1103I	ATGCAT	1 cut(s)	157
MscI	TGGCCA	1 cut(s)	342
MseI	TTAA	1 cut(s)	324
Msp20I	TGGCCA	1 cut(s)	342
MspR9I	CCNGG	1 cut(s)	186
MvaI	CCWGG	1 cut(s)	186
NdeII	GATC	1 cut(s)	240
NlaIII	CATG	2 cut(s)	155, 281
NlaIV	GGNNCC	2 cut(s)	183, 222
NsiI	ATGCAT	1 cut(s)	157
NspI	RCATGY	1 cut(s)	155
PaeI	GCATGC	1 cut(s)	155
PceI	AGGCCT	1 cut(s)	64
PflMI	CCANNNNNTGG	1 cut(s)	369
PfoI	TCCNGGA	1 cut(s)	184
PkrI	GCNGC	2 cut(s)	225, 252
PpuMI	RGGWCCY	1 cut(s)	182
Psp124BI	GAGCTC	1 cut(s)	14
Psp5II	RGGWCCY	1 cut(s)	182
Psp6I	CCWGG	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	184
PspN4I	GGNNCC	2 cut(s)	183, 222
PspPI	GGNCC	3 cut(s)	102, 182, 281
PspPPI	RGGWCCY	1 cut(s)	182
SacI	GAGCTC	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	2 cut(s)	224, 251
Sau3AI	GATC	1 cut(s)	240
Sau96I	GGNCC	3 cut(s)	102, 182, 281
ScrFI	CCNGG	1 cut(s)	186
SduI	GDGCHC	1 cut(s)	14
SetI	ASST	6 cut(s)	14, 73, 107, 163, 233, 307
SfaNI	GCATC	2 cut(s)	88, 164
SinI	GGWCC	2 cut(s)	102, 182
SphI	GCATGC	1 cut(s)	155
SseBI	AGGCCT	1 cut(s)	64
SsiI	CCGC	2 cut(s)	224, 373
SstI	GAGCTC	1 cut(s)	14
StuI	AGGCCT	1 cut(s)	64
StyD4I	CCNGG	1 cut(s)	184
TaqI	TCGA	1 cut(s)	312
TauI	GCSGC	1 cut(s)	226
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	1 cut(s)	273
TseI	GCWGC	1 cut(s)	250
TspDTI	ATGAA	2 cut(s)	276, 308
TspRI	CASTG	1 cut(s)	273
Van91I	CCANNNNNTGG	1 cut(s)	369
VpaK11BI	GGWCC	2 cut(s)	102, 182
XceI	RCATGY	1 cut(s)	155
Zsp2I	ATGCAT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.