Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0007048

Physical Location & Seq

Genomic Coordinates Reverse (-)

2547823 .. 2551184

Gene Structure 3362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g02780.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGAAAGCTATTTCCGCAGCACCAAACACCACCTCATTATTCCGCAGAGCAACCAACCGCTTCAAAATCCCAGTCCCTTCCTTCATCCGAAACACCATGTCTGATTCCGATCACCAATCCCTTCCTCCTTTTTCCTCCCCAAGAATGGTCGTCAAGAAGGTCCTCGCCAAGAGCCAGCACGAAGGCGATGGCGCTGTTGTCAAGAGAGCCATTGGAAGCCGCGAGTTGAGGAACCTGGATCCTTTTCTGATGATCGATCACTTTTCAGTGTCCCCTCCTGCTGGATTTCCTGACCACCCACACAGAGGTTTCGAGACTGTCACATATATGTTACAGGGAGCAATCACTCACCAAGACTTTGCAGGGCACAGGGGTACAATCCGAACTGGGGATGTGCAGTGGATGACGGCAGGCAGGGGAATAGTTCATTCAGAAATGCCTGAAGGAGAAGGACCCAGCACTGGTTTGCAGCTTTGGATCAATTTAGCCCGGAAGGACAAAATGATTGAGCCAAGATATCAAGAACTCCTAAGCAAGGACATAACTAGGGCAGAGAAAGACGGGGTCGATGTCCGAGTTGTCGCCGGAGAAGCATTGGGAGTCAACTCCCCAGTTTACACCAGAACACCAGCAATGTTTCTAGATTTCGTCTTAAAACCAAGAGCTCAACTTCATCATTGCATACCGGAAGCCTGGACTTCATTTGTGTACGTAATCGAAGGAGAAGGGTTGTTTGGATCAACTCATTCGTCAGCTCATCACATCTTGGTTTTGGGTTCAGGAGACGGTCTAAGCGTGTGCAACAAGTCATCGGAGCCGTTGCGGTTTTTGTTAGCGGCAGGGCAACCTTTAAATGAACCAGTGGTTTCGCATGGCCCTTTTGTGATGAACACACAGGAGGAAATCTACCAAACTATTCAAGACTATCACTATGGCATGAATGGGTTTGAAATGGCCAAGAATTGGACATCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009785 GO:0009892 GO:0009987 GO:0010033 GO:0010466 GO:0010605 GO:0016020 GO:0019222 GO:0023052 GO:0030162 GO:0030234 GO:0030414 GO:0030522 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032870 GO:0033993 GO:0042221 GO:0042742 GO:0043086 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051704 GO:0051707 GO:0051716 GO:0052547 GO:0060255 GO:0061134 GO:0065007 GO:0065009 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0071944 GO:0080090 GO:0097305 GO:0097306 GO:0098542 GO:0098772 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pirin Pirin_C

Protein Analysis

326

Amino Acids

36.03

Weight (kDa)

7.29

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43120 AT2G43120 AT3G59220 AT3G59260
fragaria_vesca	FvH4_4g11770 FvH4_4g11770 FvH4_4g11770 FvH4_4g11770
malus_domestica	MD04G1033300.v1.1
prunus_persica	Prupe.1G181100_v2.0.a1
pyrus_communis	pycom04g02740 pycom04g02780
rosa_chinensis	RchiOBHm_Chr4g0409021
rosa_laevigata	RLG00000008595
rosa_multiflora	Rmu_sc0000121.1_g000003 Rmu_sc0006766.1_g000003 Rmu_sc0017774.1_g000001 Rmu_sc0022473.1_g000002 Rmu_sc0026065.1_g000003
rosa_roxburghii	Rroxscaffold_5G00353500
rosa_rugosa	Rorug04G0089800
rosa_samantha	Rh4AG153500 Rh4BG151600 Rh4CG162000 Rh4DG146900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	963
AccII	CGCG	1 cut(s)	222
AciI	CCGC	6 cut(s)	15, 43, 58, 220, 823, 836
AclWI	GGATC	4 cut(s)	233, 246, 485, 745
AcoI	YGGCCR	1 cut(s)	954
AcuI	CTGAAG	1 cut(s)	462
AfaI	GTAC	2 cut(s)	376, 710
AfiI	CCNNNNNNNGG	7 cut(s)	145, 281, 305, 388, 461, 535, 963
AgsI	TTSAA	3 cut(s)	64, 920, 950
AjnI	CCWGG	2 cut(s)	234, 692
AjuI	GAANNNNNNNTTGG	2 cut(s)	717, 749
AluBI	AGCT	4 cut(s)	8, 472, 665, 755
AluI	AGCT	4 cut(s)	8, 472, 665, 755
Alw21I	GWGCWC	1 cut(s)	667
Alw26I	GTCTC	2 cut(s)	308, 777
AlwI	GGATC	4 cut(s)	233, 246, 485, 745
AoxI	GGCC	2 cut(s)	874, 954
ApeKI	GCWGC	2 cut(s)	17, 469
ArsI	GACNNNNNNTTYG	2 cut(s)	57, 89
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	3 cut(s)	160, 452, 875
AsuC2I	CCSGG	1 cut(s)	490
AsuHPI	GGTGA	2 cut(s)	104, 341
AvaII	GGWCC	2 cut(s)	160, 452
BaeGI	GKGCMC	1 cut(s)	369
BalI	TGGCCA	1 cut(s)	956
BamHI	GGATCC	1 cut(s)	238
BanII	GRGCYC	1 cut(s)	667
Bbv12I	GWGCWC	1 cut(s)	667
BbvI	GCAGC	2 cut(s)	29, 481
BccI	CCATC	1 cut(s)	182
BceAI	ACGGC	2 cut(s)	423, 802
BciT130I	CCWGG	2 cut(s)	236, 694
BcnI	CCSGG	1 cut(s)	490
BcoDI	GTCTC	2 cut(s)	308, 777
BfaI	CTAG	2 cut(s)	546, 641
BfoI	RGCGCY	1 cut(s)	195
BisI	GCNGC	4 cut(s)	18, 220, 470, 837
BlsI	GCNGC	4 cut(s)	19, 221, 471, 838
Bme1390I	CCNGG	3 cut(s)	236, 490, 694
Bme18I	GGWCC	2 cut(s)	160, 452
BmgT120I	GGNCC	3 cut(s)	160, 452, 875
BmiI	GGNNCC	4 cut(s)	233, 240, 454, 816
BmrFI	CCNGG	3 cut(s)	236, 490, 694
BmrI	ACTGGG	3 cut(s)	65, 396, 605
BmuI	ACTGGG	3 cut(s)	65, 396, 605
Bpu10I	CCTNAGC	1 cut(s)	530
BpuMI	CCSGG	1 cut(s)	490
Bsa29I	ATCGAT	1 cut(s)	255
BsaAI	YACGTR	1 cut(s)	712
BsaBI	GATNNNNATC	1 cut(s)	108
BsaWI	WCCGGW	1 cut(s)	685
Bsc4I	CCNNNNNNNGG	7 cut(s)	145, 281, 305, 388, 461, 535, 963
Bse1I	ACTGG	5 cut(s)	71, 391, 466, 611, 860
Bse3DI	GCAATG	2 cut(s)	639, 676
Bse8I	GATNNNNATC	1 cut(s)	108
BseBI	CCWGG	2 cut(s)	236, 694
BseCI	ATCGAT	1 cut(s)	255
BseGI	GGATG	3 cut(s)	84, 397, 408
BseJI	GATNNNNATC	1 cut(s)	108
BseLI	CCNNNNNNNGG	7 cut(s)	145, 281, 305, 388, 461, 535, 963
BseMI	GCAATG	2 cut(s)	639, 676
BseNI	ACTGG	5 cut(s)	71, 391, 466, 611, 860
BseSI	GKGCMC	1 cut(s)	369
BseXI	GCAGC	2 cut(s)	29, 481
BseYI	CCCAGC	1 cut(s)	455
BsgI	GTGCAG	1 cut(s)	416
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	2 cut(s)	876, 956
BshVI	ATCGAT	1 cut(s)	255
BsiHKAI	GWGCWC	1 cut(s)	667
BsiSI	CCGG	3 cut(s)	490, 585, 686
BslFI	GGGAC	2 cut(s)	59, 256
BslI	CCNNNNNNNGG	7 cut(s)	145, 281, 305, 388, 461, 535, 963
BsmAI	GTCTC	2 cut(s)	308, 777
BsmBI	CGTCTC	1 cut(s)	777
BsmFI	GGGAC	2 cut(s)	59, 256
BsnI	GGCC	2 cut(s)	876, 956
Bsp1286I	GDGCHC	2 cut(s)	369, 667
Bsp143I	GATC	6 cut(s)	109, 238, 252, 256, 477, 737
BspACI	CCGC	6 cut(s)	15, 43, 58, 220, 823, 836
BspANI	GGCC	2 cut(s)	876, 956
BspDI	ATCGAT	1 cut(s)	255
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	4 cut(s)	233, 240, 454, 816
BspPI	GGATC	4 cut(s)	233, 246, 485, 745
BsrDI	GCAATG	2 cut(s)	639, 676
BsrI	ACTGG	5 cut(s)	71, 391, 466, 611, 860
BssMI	GATC	6 cut(s)	109, 238, 252, 256, 477, 737
Bst2UI	CCWGG	2 cut(s)	236, 694
Bst4CI	ACNGT	2 cut(s)	319, 788
BstBAI	YACGTR	1 cut(s)	712
BstC8I	GCNNGC	2 cut(s)	176, 412
BstDEI	CTNAG	2 cut(s)	530, 791
BstENI	CCTNNNNNAGG	1 cut(s)	533
BstF5I	GGATG	3 cut(s)	84, 397, 408
BstFNI	CGCG	1 cut(s)	222
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	6 cut(s)	112, 241, 255, 259, 480, 740
BstMAI	GTCTC	2 cut(s)	308, 777
BstMBI	GATC	6 cut(s)	109, 238, 252, 256, 477, 737
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 590
BstNI	CCWGG	2 cut(s)	236, 694
BstSCI	CCNGG	3 cut(s)	234, 488, 692
BstSLI	GKGCMC	1 cut(s)	369
BstSNI	TACGTA	1 cut(s)	712
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	2 cut(s)	29, 481
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
Bsu15I	ATCGAT	1 cut(s)	255
BsuRI	GGCC	2 cut(s)	876, 956
BsuTUI	ATCGAT	1 cut(s)	255
BtgZI	GCGATG	1 cut(s)	201
BtsCI	GGATG	3 cut(s)	84, 397, 408
BtsI	GCAGTG	1 cut(s)	404
BtsIMutI	CAGTG	4 cut(s)	273, 404, 459, 867
Cac8I	GCNNGC	2 cut(s)	176, 412
CfoI	GCGC	1 cut(s)	194
Cfr13I	GGNCC	3 cut(s)	160, 452, 875
ClaI	ATCGAT	1 cut(s)	255
Csp6I	GTAC	2 cut(s)	375, 709
CviAII	CATG	3 cut(s)	97, 872, 937
CviQI	GTAC	2 cut(s)	375, 709
DdeI	CTNAG	2 cut(s)	530, 791
DpnI	GATC	6 cut(s)	111, 240, 254, 258, 479, 739
DpnII	GATC	6 cut(s)	109, 238, 252, 256, 477, 737
DraI	TTTAAA	1 cut(s)	852
EaeI	YGGCCR	1 cut(s)	954
Ecl136II	GAGCTC	1 cut(s)	665
Eco105I	TACGTA	1 cut(s)	712
Eco24I	GRGCYC	1 cut(s)	667
Eco32I	GATATC	1 cut(s)	518
Eco47I	GGWCC	2 cut(s)	160, 452
Eco53kI	GAGCTC	1 cut(s)	665
Eco57I	CTGAAG	1 cut(s)	462
EcoICRI	GAGCTC	1 cut(s)	665
EcoNI	CCTNNNNNAGG	1 cut(s)	533
EcoO109I	RGGNCCY	2 cut(s)	160, 452
EcoRII	CCWGG	2 cut(s)	234, 692
EcoRV	GATATC	1 cut(s)	518
EcoT38I	GRGCYC	1 cut(s)	667
Esp3I	CGTCTC	1 cut(s)	777
FaeI	CATG	3 cut(s)	100, 875, 940
FaiI	YATR	9 cut(s)	98, 325, 327, 329, 542, 683, 873, 933, 938
FaqI	GGGAC	2 cut(s)	59, 256
FatI	CATG	3 cut(s)	96, 871, 936
Fnu4HI	GCNGC	4 cut(s)	18, 220, 470, 837
FokI	GGATG	3 cut(s)	71, 404, 415
FriOI	GRGCYC	1 cut(s)	667
Fsp4HI	GCNGC	4 cut(s)	18, 220, 470, 837
FspBI	CTAG	2 cut(s)	546, 641
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	4 cut(s)	18, 220, 470, 837
GsaI	CCCAGC	1 cut(s)	459
HaeII	RGCGCY	1 cut(s)	195
HaeIII	GGCC	2 cut(s)	876, 956
HapII	CCGG	3 cut(s)	490, 585, 686
HhaI	GCGC	1 cut(s)	194
Hin1II	CATG	3 cut(s)	100, 875, 940
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HinfI	GANTC	2 cut(s)	104, 600
HpaII	CCGG	3 cut(s)	490, 585, 686
HphI	GGTGA	2 cut(s)	104, 341
Hpy166II	GTNNAC	3 cut(s)	604, 616, 709
Hpy188I	TCNGA	8 cut(s)	89, 103, 109, 249, 383, 433, 575, 814
Hpy188III	TCNNGA	8 cut(s)	154, 202, 290, 313, 521, 641, 780, 920
Hpy8I	GTNNAC	3 cut(s)	604, 616, 709
HpyCH4III	ACNGT	2 cut(s)	319, 788
HpyCH4IV	ACGT	1 cut(s)	711
HpyCH4V	TGCA	5 cut(s)	362, 397, 469, 681, 801
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 590
HpyF3I	CTNAG	2 cut(s)	530, 791
HpySE526I	ACGT	1 cut(s)	711
Hsp92II	CATG	3 cut(s)	100, 875, 940
HspAI	GCGC	1 cut(s)	192
Kzo9I	GATC	6 cut(s)	109, 238, 252, 256, 477, 737
LmnI	GCTCC	2 cut(s)	338, 814
Lsp1109I	GCAGC	2 cut(s)	29, 481
MaeI	CTAG	2 cut(s)	546, 641
MaeII	ACGT	1 cut(s)	711
MaeIII	GTNAC	2 cut(s)	319, 330
MalI	GATC	6 cut(s)	111, 240, 254, 258, 479, 739
MboI	GATC	6 cut(s)	109, 238, 252, 256, 477, 737
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	2 cut(s)	369, 667
MlsI	TGGCCA	1 cut(s)	956
MluCI	AATT	2 cut(s)	481, 961
MluNI	TGGCCA	1 cut(s)	956
MlyI	GAGTC	1 cut(s)	609
MnlI	CCTC	8 cut(s)	43, 135, 145, 173, 222, 285, 299, 892
Mox20I	TGGCCA	1 cut(s)	956
MscI	TGGCCA	1 cut(s)	956
MseI	TTAA	2 cut(s)	653, 851
MslI	CAYNNNNRTG	2 cut(s)	326, 973
Msp20I	TGGCCA	1 cut(s)	956
MspI	CCGG	3 cut(s)	490, 585, 686
MspR9I	CCNGG	3 cut(s)	236, 490, 694
MvaI	CCWGG	2 cut(s)	236, 694
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	14, 590
NciI	CCSGG	1 cut(s)	490
NdeII	GATC	6 cut(s)	109, 238, 252, 256, 477, 737
NlaIII	CATG	3 cut(s)	100, 875, 940
NlaIV	GGNNCC	4 cut(s)	233, 240, 454, 816
NmuCI	GTSAC	1 cut(s)	319
PcsI	WCGNNNNNNNCGW	1 cut(s)	792
PfeI	GAWTC	1 cut(s)	104
PflFI	GACNNNGTC	1 cut(s)	563
PflMI	CCANNNNNTGG	1 cut(s)	963
PkrI	GCNGC	4 cut(s)	19, 221, 471, 838
PleI	GAGTC	1 cut(s)	608
PpsI	GAGTC	1 cut(s)	608
Ppu21I	YACGTR	1 cut(s)	712
PpuMI	RGGWCCY	2 cut(s)	160, 452
Psp124BI	GAGCTC	1 cut(s)	667
Psp5II	RGGWCCY	2 cut(s)	160, 452
Psp6I	CCWGG	2 cut(s)	234, 692
PspFI	CCCAGC	1 cut(s)	455
PspGI	CCWGG	2 cut(s)	234, 692
PspN4I	GGNNCC	4 cut(s)	233, 240, 454, 816
PspPI	GGNCC	3 cut(s)	160, 452, 875
PspPPI	RGGWCCY	2 cut(s)	160, 452
PsuI	RGATCY	1 cut(s)	238
PsyI	GACNNNGTC	1 cut(s)	563
RsaI	GTAC	2 cut(s)	376, 710
RsaNI	GTAC	2 cut(s)	375, 709
RseI	CAYNNNNRTG	2 cut(s)	326, 973
SacI	GAGCTC	1 cut(s)	667
SaqAI	TTAA	2 cut(s)	653, 851
SatI	GCNGC	4 cut(s)	18, 220, 470, 837
Sau3AI	GATC	6 cut(s)	109, 238, 252, 256, 477, 737
Sau96I	GGNCC	3 cut(s)	160, 452, 875
SchI	GAGTC	1 cut(s)	609
ScrFI	CCNGG	3 cut(s)	236, 490, 694
SduI	GDGCHC	2 cut(s)	369, 667
SinI	GGWCC	2 cut(s)	160, 452
SmiMI	CAYNNNNRTG	2 cut(s)	326, 973
SnaBI	TACGTA	1 cut(s)	712
Sse9I	AATT	2 cut(s)	481, 961
SsiI	CCGC	6 cut(s)	15, 43, 58, 220, 823, 836
SspMI	CTAG	2 cut(s)	546, 641
SstI	GAGCTC	1 cut(s)	667
StyD4I	CCNGG	3 cut(s)	234, 488, 692
TaaI	ACNGT	2 cut(s)	319, 788
TaiI	ACGT	1 cut(s)	714
TaqI	TCGA	4 cut(s)	255, 312, 567, 717
TasI	AATT	2 cut(s)	481, 961
TauI	GCSGC	2 cut(s)	222, 839
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	2 cut(s)	653, 851
Tru9I	TTAA	2 cut(s)	653, 851
TscAI	CASTG	4 cut(s)	273, 404, 466, 867
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	2 cut(s)	17, 469
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	8 cut(s)	17, 73, 416, 662, 690, 870, 902, 953
TspRI	CASTG	4 cut(s)	273, 404, 466, 867
Tth111I	GACNNNGTC	1 cut(s)	563
Van91I	CCANNNNNTGG	1 cut(s)	963
VpaK11BI	GGWCC	2 cut(s)	160, 452
XagI	CCTNNNNNAGG	1 cut(s)	533
XbaI	TCTAGA	1 cut(s)	640
XspI	CTAG	2 cut(s)	546, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.