Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000121.1

Orthogroup ID

OG0007048

Physical Location & Seq

Genomic Coordinates Forward (+)

3478 .. 5947

Gene Structure 2470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000121.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atgcgtttgagagcaatagcaaattttgcacgcaatagcttactcttcactgcaaaaaccaccaccaccaccagaagcaagaaccatttgaatttcagggtccccttcttcatcagaaaccacaccatgtctggttcagatcaatccccttctttcaacacacccagaatggtggtcaagaaggtcctggccaagtcccagagtgagggtgatggagctgttgtcagaagagccattggaatctctgagttgaggaacctggatccgtttctcatgctagataactttacagtgtcccctcctgccggatttccagatcatccacatagaggattcgaaactgtcacatatgtgctacagggaggcatcactcaccaagactttgcagggcacaagggtacaattggagctggagatgtgcagtggatgacagcaggcaggggaatagttcactctgagatgcctgcaggagcaggacgcaacaatggtttgcagctttggatcaatttagcccgcaaagacaaaatggttgagcctagataccaagaactcctaagcaaggagataaagtgggcagagaaagatggagttgaagttcgagtgatagcaggagaaacaatgggagtgagctctcctgtttatacccgaacaccaacatttttctttgacttcacccttaagcctaaagctattttgcatcaaagcataccagaaagttggacctgctttgtttgggaaccccagaggtggccggaaaaggccgccggagttagggacatatccgccaccgaccaccgcctatggtgtcggggccgagcttttcctcttcgtttaatcattttgagcaactttcataactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009785 GO:0009892 GO:0009987 GO:0010033 GO:0010466 GO:0010605 GO:0016020 GO:0019222 GO:0023052 GO:0030162 GO:0030234 GO:0030414 GO:0030522 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032870 GO:0033993 GO:0042221 GO:0042742 GO:0043086 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051704 GO:0051707 GO:0051716 GO:0052547 GO:0060255 GO:0061134 GO:0065007 GO:0065009 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0071944 GO:0080090 GO:0097305 GO:0097306 GO:0098542 GO:0098772 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pirin Pirin_C

Protein Analysis

286

Amino Acids

32.22

Weight (kDa)

10.04

Isoelectric Point (pI)

45.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43120 AT2G43120 AT3G59220 AT3G59260
fragaria_vesca	FvH4_4g11770 FvH4_4g11770 FvH4_4g11770 FvH4_4g11770
malus_domestica	MD04G1033300.v1.1
prunus_persica	Prupe.1G181100_v2.0.a1
pyrus_communis	pycom04g02740 pycom04g02780
rosa_chinensis	RchiOBHm_Chr4g0409021
rosa_laevigata	RLG00000008595
rosa_multiflora	Rmu_sc0000121.1_g000003 Rmu_sc0006766.1_g000003 Rmu_sc0017774.1_g000001 Rmu_sc0022473.1_g000002 Rmu_sc0026065.1_g000003
rosa_roxburghii	Rroxscaffold_5G00353500
rosa_rugosa	Rorug04G0089800
rosa_samantha	Rh4AG153500 Rh4BG151600 Rh4CG162000 Rh4DG146900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	731
AciI	CCGC	4 cut(s)	514, 762, 783, 796
AclWI	GGATC	3 cut(s)	257, 270, 509
AcoI	YGGCCR	2 cut(s)	189, 749
AcsI	RAATTY	2 cut(s)	22, 91
AfaI	GTAC	1 cut(s)	400
AfiI	CCNNNNNNNGG	6 cut(s)	205, 305, 329, 559, 747, 771
AflII	CTTAAG	1 cut(s)	677
AgsI	TTSAA	3 cut(s)	91, 157, 593
AjnI	CCWGG	2 cut(s)	186, 258
AleI	CACNNNNGTG	1 cut(s)	350
AloI	GAACNNNNNNTCC	2 cut(s)	579, 611
AluBI	AGCT	7 cut(s)	39, 218, 410, 496, 630, 689, 818
AluI	AGCT	7 cut(s)	39, 218, 410, 496, 630, 689, 818
Alw21I	GWGCWC	1 cut(s)	632
AlwI	GGATC	3 cut(s)	257, 270, 509
AoxI	GGCC	4 cut(s)	189, 749, 759, 811
ApeKI	GCWGC	1 cut(s)	493
ApoI	RAATTY	2 cut(s)	22, 91
AspS9I	GGNCC	4 cut(s)	100, 184, 720, 811
AsuHPI	GGTGA	3 cut(s)	221, 365, 664
AsuII	TTCGAA	1 cut(s)	336
AvaII	GGWCC	3 cut(s)	100, 184, 720
BaeGI	GKGCMC	1 cut(s)	393
BalI	TGGCCA	1 cut(s)	191
BamHI	GGATCC	1 cut(s)	262
BanII	GRGCYC	1 cut(s)	632
Bbv12I	GWGCWC	1 cut(s)	632
BbvI	GCAGC	1 cut(s)	505
BccI	CCATC	2 cut(s)	206, 578
BciT130I	CCWGG	2 cut(s)	188, 260
BfaI	CTAG	3 cut(s)	278, 537, 859
BfmI	CTRYAG	2 cut(s)	356, 465
BfrI	CTTAAG	1 cut(s)	677
BfuAI	ACCTGC	1 cut(s)	731
BisI	GCNGC	2 cut(s)	494, 762
BlsI	GCNGC	2 cut(s)	495, 763
Bme1390I	CCNGG	2 cut(s)	188, 260
Bme18I	GGWCC	3 cut(s)	100, 184, 720
BmgT120I	GGNCC	4 cut(s)	100, 184, 720, 811
BmiI	GGNNCC	6 cut(s)	101, 102, 257, 264, 738, 812
BmrFI	CCNGG	2 cut(s)	188, 260
BmsI	GCATC	3 cut(s)	375, 450, 706
BpmI	CTGGAG	1 cut(s)	432
Bpu10I	CCTNAGC	1 cut(s)	554
Bpu14I	TTCGAA	1 cut(s)	336
BsaXI	ACNNNNNCTCC	6 cut(s)	207, 237, 554, 579, 584, 609
Bsc4I	CCNNNNNNNGG	6 cut(s)	205, 305, 329, 559, 747, 771
BseBI	CCWGG	2 cut(s)	188, 260
BseGI	GGATG	2 cut(s)	319, 432
BseLI	CCNNNNNNNGG	6 cut(s)	205, 305, 329, 559, 747, 771
BseMII	CTCAG	2 cut(s)	237, 447
BseSI	GKGCMC	1 cut(s)	393
BseXI	GCAGC	1 cut(s)	505
BsgI	GTGCAG	1 cut(s)	440
BshFI	GGCC	4 cut(s)	191, 751, 761, 813
BsiHKAI	GWGCWC	1 cut(s)	632
BsiSI	CCGG	3 cut(s)	306, 752, 765
BslFI	GGGAC	4 cut(s)	86, 181, 280, 788
BslI	CCNNNNNNNGG	6 cut(s)	205, 305, 329, 559, 747, 771
BsmFI	GGGAC	4 cut(s)	86, 181, 280, 788
BsnI	GGCC	4 cut(s)	191, 751, 761, 813
Bsp119I	TTCGAA	1 cut(s)	336
Bsp1286I	GDGCHC	2 cut(s)	393, 632
Bsp143I	GATC	4 cut(s)	139, 262, 316, 501
BspACI	CCGC	4 cut(s)	514, 762, 783, 796
BspANI	GGCC	4 cut(s)	191, 751, 761, 813
BspCNI	CTCAG	2 cut(s)	238, 448
BspLI	GGNNCC	6 cut(s)	101, 102, 257, 264, 738, 812
BspMAI	CTGCAG	1 cut(s)	469
BspMI	ACCTGC	1 cut(s)	731
BspPI	GGATC	3 cut(s)	257, 270, 509
BspQI	GCTCTTC	1 cut(s)	223
BspT104I	TTCGAA	1 cut(s)	336
BspTI	CTTAAG	1 cut(s)	677
BssMI	GATC	4 cut(s)	139, 262, 316, 501
Bst2UI	CCWGG	2 cut(s)	188, 260
Bst4CI	ACNGT	2 cut(s)	292, 343
Bst6I	CTCTTC	3 cut(s)	50, 223, 831
BstAFI	CTTAAG	1 cut(s)	677
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstBI	TTCGAA	1 cut(s)	336
BstC8I	GCNNGC	4 cut(s)	31, 436, 465, 514
BstDEI	CTNAG	3 cut(s)	246, 456, 554
BstENI	CCTNNNNNAGG	1 cut(s)	557
BstF5I	GGATG	2 cut(s)	319, 432
BstKTI	GATC	4 cut(s)	142, 265, 319, 504
BstMBI	GATC	4 cut(s)	139, 262, 316, 501
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNI	CCWGG	2 cut(s)	188, 260
BstSCI	CCNGG	2 cut(s)	186, 258
BstSFI	CTRYAG	2 cut(s)	356, 465
BstSLI	GKGCMC	1 cut(s)	393
BstV1I	GCAGC	1 cut(s)	505
BstX2I	RGATCY	1 cut(s)	262
BstXI	CCANNNNNNTGG	2 cut(s)	172, 717
BstYI	RGATCY	1 cut(s)	262
BsuRI	GGCC	4 cut(s)	191, 751, 761, 813
BtsCI	GGATG	2 cut(s)	319, 432
BtsI	GCAGTG	2 cut(s)	48, 428
BtsIMutI	CAGTG	3 cut(s)	48, 297, 428
BveI	ACCTGC	1 cut(s)	731
Cac8I	GCNNGC	4 cut(s)	31, 436, 465, 514
Cfr13I	GGNCC	4 cut(s)	100, 184, 720, 811
CseI	GACGC	1 cut(s)	486
Csp6I	GTAC	1 cut(s)	399
CviAII	CATG	2 cut(s)	127, 274
CviQI	GTAC	1 cut(s)	399
DdeI	CTNAG	3 cut(s)	246, 456, 554
DpnI	GATC	4 cut(s)	141, 264, 318, 503
DpnII	GATC	4 cut(s)	139, 262, 316, 501
EaeI	YGGCCR	2 cut(s)	189, 749
Eam1104I	CTCTTC	3 cut(s)	50, 223, 831
EarI	CTCTTC	3 cut(s)	50, 223, 831
EciI	GGCGGA	1 cut(s)	772
Ecl136II	GAGCTC	1 cut(s)	630
Eco24I	GRGCYC	1 cut(s)	632
Eco47I	GGWCC	3 cut(s)	100, 184, 720
Eco53kI	GAGCTC	1 cut(s)	630
EcoICRI	GAGCTC	1 cut(s)	630
EcoNI	CCTNNNNNAGG	1 cut(s)	557
EcoO109I	RGGNCCY	2 cut(s)	100, 184
EcoRII	CCWGG	2 cut(s)	186, 258
EcoT38I	GRGCYC	1 cut(s)	632
FaeI	CATG	2 cut(s)	130, 277
FaqI	GGGAC	4 cut(s)	86, 181, 280, 788
FatI	CATG	2 cut(s)	126, 273
FauI	CCCGC	1 cut(s)	521
FauNDI	CATATG	1 cut(s)	349
Fnu4HI	GCNGC	2 cut(s)	494, 762
FokI	GGATG	2 cut(s)	306, 439
FriOI	GRGCYC	1 cut(s)	632
Fsp4HI	GCNGC	2 cut(s)	494, 762
FspBI	CTAG	3 cut(s)	278, 537, 859
GluI	GCNGC	2 cut(s)	494, 762
GsuI	CTGGAG	1 cut(s)	432
HaeIII	GGCC	4 cut(s)	191, 751, 761, 813
HapII	CCGG	3 cut(s)	306, 752, 765
HgaI	GACGC	1 cut(s)	486
Hin1II	CATG	2 cut(s)	130, 277
HinfI	GANTC	2 cut(s)	240, 333
HpaII	CCGG	3 cut(s)	306, 752, 765
HphI	GGTGA	3 cut(s)	221, 365, 664
Hpy166II	GTNNAC	1 cut(s)	451
Hpy188I	TCNGA	5 cut(s)	116, 139, 227, 247, 457
Hpy188III	TCNNGA	2 cut(s)	178, 314
Hpy8I	GTNNAC	1 cut(s)	451
HpyAV	CCTTC	3 cut(s)	115, 159, 175
HpyCH4III	ACNGT	2 cut(s)	292, 343
HpyCH4V	TGCA	7 cut(s)	29, 53, 386, 421, 467, 493, 697
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	3 cut(s)	246, 456, 554
Hsp92II	CATG	2 cut(s)	130, 277
KflI	GGGWCCC	1 cut(s)	100
Kzo9I	GATC	4 cut(s)	139, 262, 316, 501
LguI	GCTCTTC	1 cut(s)	223
LmnI	GCTCC	3 cut(s)	215, 407, 470
Lsp1109I	GCAGC	1 cut(s)	505
LweI	GCATC	3 cut(s)	375, 450, 706
MaeI	CTAG	3 cut(s)	278, 537, 859
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	4 cut(s)	141, 264, 318, 503
MboI	GATC	4 cut(s)	139, 262, 316, 501
MboII	GAAGA	4 cut(s)	37, 100, 240, 818
MfeI	CAATTG	1 cut(s)	402
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	2 cut(s)	393, 632
MlsI	TGGCCA	1 cut(s)	191
MluCI	AATT	4 cut(s)	22, 91, 402, 505
MluNI	TGGCCA	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	698
MnlI	CCTC	7 cut(s)	199, 246, 309, 323, 356, 738, 834
Mox20I	TGGCCA	1 cut(s)	191
MscI	TGGCCA	1 cut(s)	191
MseI	TTAA	2 cut(s)	678, 833
MslI	CAYNNNNRTG	1 cut(s)	350
Msp20I	TGGCCA	1 cut(s)	191
MspCI	CTTAAG	1 cut(s)	677
MspI	CCGG	3 cut(s)	306, 752, 765
MspR9I	CCNGG	2 cut(s)	188, 260
MunI	CAATTG	1 cut(s)	402
MvaI	CCWGG	2 cut(s)	188, 260
MwoI	GCNNNNNNNGC	1 cut(s)	26
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	4 cut(s)	139, 262, 316, 501
NlaIII	CATG	2 cut(s)	130, 277
NlaIV	GGNNCC	6 cut(s)	101, 102, 257, 264, 738, 812
NmeAIII	GCCGAG	1 cut(s)	839
NmuCI	GTSAC	1 cut(s)	343
NspV	TTCGAA	1 cut(s)	336
OliI	CACNNNNGTG	1 cut(s)	350
PciSI	GCTCTTC	1 cut(s)	223
PfeI	GAWTC	2 cut(s)	240, 333
PkrI	GCNGC	2 cut(s)	495, 763
PpuMI	RGGWCCY	2 cut(s)	100, 184
Psp124BI	GAGCTC	1 cut(s)	632
Psp5II	RGGWCCY	2 cut(s)	100, 184
Psp6I	CCWGG	2 cut(s)	186, 258
PspGI	CCWGG	2 cut(s)	186, 258
PspN4I	GGNNCC	6 cut(s)	101, 102, 257, 264, 738, 812
PspPI	GGNCC	4 cut(s)	100, 184, 720, 811
PspPPI	RGGWCCY	2 cut(s)	100, 184
PstI	CTGCAG	1 cut(s)	469
PsuI	RGATCY	1 cut(s)	262
RsaI	GTAC	1 cut(s)	400
RsaNI	GTAC	1 cut(s)	399
RseI	CAYNNNNRTG	1 cut(s)	350
SacI	GAGCTC	1 cut(s)	632
SapI	GCTCTTC	1 cut(s)	223
SaqAI	TTAA	2 cut(s)	678, 833
SatI	GCNGC	2 cut(s)	494, 762
Sau3AI	GATC	4 cut(s)	139, 262, 316, 501
Sau96I	GGNCC	4 cut(s)	100, 184, 720, 811
SbfI	CCTGCAGG	1 cut(s)	469
ScrFI	CCNGG	2 cut(s)	188, 260
SdaI	CCTGCAGG	1 cut(s)	469
SduI	GDGCHC	2 cut(s)	393, 632
SfaNI	GCATC	3 cut(s)	375, 450, 706
SfcI	CTRYAG	2 cut(s)	356, 465
SfuI	TTCGAA	1 cut(s)	336
SinI	GGWCC	3 cut(s)	100, 184, 720
SmiMI	CAYNNNNRTG	1 cut(s)	350
SmlI	CTYRAG	1 cut(s)	677
SmoI	CTYRAG	1 cut(s)	677
Sse8387I	CCTGCAGG	1 cut(s)	469
Sse9I	AATT	4 cut(s)	22, 91, 402, 505
SsiI	CCGC	4 cut(s)	514, 762, 783, 796
SspMI	CTAG	3 cut(s)	278, 537, 859
SstI	GAGCTC	1 cut(s)	632
StyD4I	CCNGG	2 cut(s)	186, 258
TaaI	ACNGT	2 cut(s)	292, 343
TaqI	TCGA	2 cut(s)	336, 598
TasI	AATT	4 cut(s)	22, 91, 402, 505
TauI	GCSGC	1 cut(s)	764
TfiI	GAWTC	2 cut(s)	240, 333
Tru1I	TTAA	2 cut(s)	678, 833
Tru9I	TTAA	2 cut(s)	678, 833
TscAI	CASTG	3 cut(s)	55, 297, 428
TseFI	GTSAC	1 cut(s)	343
TseI	GCWGC	1 cut(s)	493
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	2 cut(s)	100, 842
TspGWI	ACGGA	1 cut(s)	255
TspRI	CASTG	3 cut(s)	55, 297, 428
Vha464I	CTTAAG	1 cut(s)	677
VpaK11BI	GGWCC	3 cut(s)	100, 184, 720
XagI	CCTNNNNNAGG	1 cut(s)	557
XapI	RAATTY	2 cut(s)	22, 91
XcmI	CCANNNNNNNNNTGG	1 cut(s)	128
XspI	CTAG	3 cut(s)	278, 537, 859

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.