Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007048

Physical Location & Seq

Genomic Coordinates Forward (+)

21903839 .. 21905188

Gene Structure 1350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G59260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAAGGTTATGGTACTGTCGTTAGGCAAGGCATCACCAAGTAAGAGTGACCATGAGTTATTGGACCCGTTCGTCTCGCTAGTTGAATTTTCCGTTTCACCTCCTGGTGGATTCAAAGATCATCCTCACAGAGGTTTTGAAAGTGTTACATACATGTTCCAGGGAGGCATCATTCACCAAGACTGTAATGGTAATAAAGGTACAATCCATGAAGGAGATGTTCAGTGGATGACAGCAGGAAGAGGAATCATTCATTCGGAAATGCCTGAAGAACAAGTCAACAAGGGGTTACAGCTTTGGATCAACCTCCCTTCTAGTGCCAAAATGATCGAGCCTAAAAATATAGAAATCTCGAGTTCAGAGATACCTAGCGCAGATGACTATGGAGTAGAGGTCAAAGTCATTGCTGGAGAGTCAATGGGAGTCAAATCTCCTTTCTACACAAAAACACCAATCATGTTCCTAGACTTTACGCTCGATCCAAAAGCTCAAACCCACCAGGCCGTTCCAGAGTCATGGACCGCCTTTGCCTACATTGTAGAAGGCGATGAAGGCGTTTTTAGCTCCTCGGACTCTTCCACAGTACAAGCACATAATGTTGTGGTGTTTGGGACAGGGGATGAAGTTAGCGTGTGGAACACGTCAAACTCTAGGCCGTTGAGGTTCTTGTTGATTGCAGGGGAACCGATAGGCGAGCCTGTGGTTCAGCATGGGCCATTTGTGATGAACTCACAGGATGAGATTGAAATGACAATTGGGGACTATCGTAATGGCATGAATGGCTTCGAAATGGCCAAGCATTGGAGGTCAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009785 GO:0009892 GO:0009987 GO:0010033 GO:0010466 GO:0010605 GO:0016020 GO:0019222 GO:0023052 GO:0030162 GO:0030234 GO:0030414 GO:0030522 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032870 GO:0033993 GO:0042221 GO:0042742 GO:0043086 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051704 GO:0051707 GO:0051716 GO:0052547 GO:0060255 GO:0061134 GO:0065007 GO:0065009 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0071944 GO:0080090 GO:0097305 GO:0097306 GO:0098542 GO:0098772 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pirin Pirin_C

Protein Analysis

271

Amino Acids

29.82

Weight (kDa)

4.91

Isoelectric Point (pI)

53.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pirin	PF02678	35 - 101	1e-26	Pirin
Pirin_C	PF05726	155 - 260	2e-33	Pirin C-terminal cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43120 AT2G43120 AT3G59220 AT3G59260
fragaria_vesca	FvH4_4g11770 FvH4_4g11770 FvH4_4g11770 FvH4_4g11770
malus_domestica	MD04G1033300.v1.1
prunus_persica	Prupe.1G181100_v2.0.a1
pyrus_communis	pycom04g02740 pycom04g02780
rosa_chinensis	RchiOBHm_Chr4g0409021
rosa_laevigata	RLG00000008595
rosa_multiflora	Rmu_sc0000121.1_g000003 Rmu_sc0006766.1_g000003 Rmu_sc0017774.1_g000001 Rmu_sc0022473.1_g000002 Rmu_sc0026065.1_g000003
rosa_roxburghii	Rroxscaffold_5G00353500
rosa_rugosa	Rorug04G0089800
rosa_samantha	Rh4AG153500 Rh4BG151600 Rh4CG162000 Rh4DG146900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	71
AccB7I	CCANNNNNTGG	1 cut(s)	801
AciI	CCGC	1 cut(s)	522
AclWI	GGATC	2 cut(s)	308, 473
AcoI	YGGCCR	1 cut(s)	792
AcsI	RAATTY	1 cut(s)	86
AcuI	CTGAAG	1 cut(s)	288
AfaI	GTAC	3 cut(s)	15, 202, 585
AfiI	CCNNNNNNNGG	3 cut(s)	107, 131, 801
AflIII	ACRYGT	2 cut(s)	153, 639
AgsI	TTSAA	4 cut(s)	86, 115, 140, 746
AjiI	CACGTC	1 cut(s)	642
AjnI	CCWGG	3 cut(s)	103, 159, 498
AjuI	GAANNNNNNNTTGG	2 cut(s)	738, 770
AluBI	AGCT	3 cut(s)	295, 488, 564
AluI	AGCT	3 cut(s)	295, 488, 564
Alw26I	GTCTC	1 cut(s)	79
AlwI	GGATC	2 cut(s)	308, 473
Ama87I	CYCGRG	1 cut(s)	352
AoxI	GGCC	4 cut(s)	501, 653, 713, 792
ApoI	RAATTY	1 cut(s)	86
Asp700I	GAANNNNTTC	1 cut(s)	782
AspLEI	GCGC	1 cut(s)	374
AspS9I	GGNCC	3 cut(s)	64, 519, 713
AsuHPI	GGTGA	3 cut(s)	27, 90, 167
AsuII	TTCGAA	1 cut(s)	786
AvaI	CYCGRG	1 cut(s)	352
AvaII	GGWCC	2 cut(s)	64, 519
BaeI	ACNNNNGTAYC	1 cut(s)	38
BalI	TGGCCA	1 cut(s)	794
BceAI	ACGGC	2 cut(s)	488, 640
BciT130I	CCWGG	3 cut(s)	105, 161, 500
BcoDI	GTCTC	1 cut(s)	79
BfaI	CTAG	5 cut(s)	80, 315, 369, 464, 651
Bme1390I	CCNGG	3 cut(s)	105, 161, 500
Bme18I	GGWCC	2 cut(s)	64, 519
BmeT110I	CYCGRG	1 cut(s)	352
BmgBI	CACGTC	1 cut(s)	642
BmgT120I	GGNCC	3 cut(s)	64, 519, 713
BmiI	GGNNCC	2 cut(s)	66, 684
BmrFI	CCNGG	3 cut(s)	105, 161, 500
BmsI	GCATC	2 cut(s)	41, 177
BpmI	CTGGAG	1 cut(s)	429
Bpu14I	TTCGAA	1 cut(s)	786
BsaJI	CCNNGG	2 cut(s)	160, 567
BsaXI	ACNNNNNCTCC	2 cut(s)	378, 408
Bsc4I	CCNNNNNNNGG	3 cut(s)	107, 131, 801
Bse3DI	GCAATG	1 cut(s)	402
BseBI	CCWGG	3 cut(s)	105, 161, 500
BseDI	CCNNGG	2 cut(s)	160, 567
BseGI	GGATG	4 cut(s)	121, 234, 625, 742
BseLI	CCNNNNNNNGG	3 cut(s)	107, 131, 801
BseMI	GCAATG	1 cut(s)	402
BseRI	GAGGAG	1 cut(s)	556
BshFI	GGCC	4 cut(s)	503, 655, 715, 794
BsiHKCI	CYCGRG	1 cut(s)	352
BslFI	GGGAC	2 cut(s)	625, 773
BslI	CCNNNNNNNGG	3 cut(s)	107, 131, 801
BsmAI	GTCTC	1 cut(s)	79
BsmBI	CGTCTC	1 cut(s)	79
BsmFI	GGGAC	2 cut(s)	625, 773
BsnI	GGCC	4 cut(s)	503, 655, 715, 794
BsoBI	CYCGRG	1 cut(s)	352
Bsp119I	TTCGAA	1 cut(s)	786
Bsp143I	GATC	4 cut(s)	118, 300, 327, 478
BspACI	CCGC	1 cut(s)	522
BspANI	GGCC	4 cut(s)	503, 655, 715, 794
BspLI	GGNNCC	2 cut(s)	66, 684
BspPI	GGATC	2 cut(s)	308, 473
BspT104I	TTCGAA	1 cut(s)	786
BsrDI	GCAATG	1 cut(s)	402
BssECI	CCNNGG	2 cut(s)	160, 567
BssMI	GATC	4 cut(s)	118, 300, 327, 478
Bst2UI	CCWGG	3 cut(s)	105, 161, 500
Bst4CI	ACNGT	3 cut(s)	18, 185, 583
Bst6I	CTCTTC	2 cut(s)	235, 580
BstBI	TTCGAA	1 cut(s)	786
BstC8I	GCNNGC	1 cut(s)	695
BstENI	CCTNNNNNAGG	1 cut(s)	129
BstF5I	GGATG	4 cut(s)	121, 234, 625, 742
BstHHI	GCGC	1 cut(s)	374
BstKTI	GATC	4 cut(s)	121, 303, 330, 481
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	4 cut(s)	118, 300, 327, 478
BstMWI	GCNNNNNNNGC	3 cut(s)	552, 561, 780
BstNI	CCWGG	3 cut(s)	105, 161, 500
BstNSI	RCATGY	1 cut(s)	157
BstSCI	CCNGG	3 cut(s)	103, 159, 498
BstXI	CCANNNNNNTGG	1 cut(s)	516
BsuRI	GGCC	4 cut(s)	503, 655, 715, 794
BtgZI	GCGATG	1 cut(s)	561
BtrI	CACGTC	1 cut(s)	642
BtsCI	GGATG	4 cut(s)	121, 234, 625, 742
BtsIMutI	CAGTG	1 cut(s)	230
Cac8I	GCNNGC	1 cut(s)	695
CfoI	GCGC	1 cut(s)	374
Cfr13I	GGNCC	3 cut(s)	64, 519, 713
Csp6I	GTAC	3 cut(s)	14, 201, 584
CviAII	CATG	7 cut(s)	53, 154, 209, 457, 516, 710, 775
CviQI	GTAC	3 cut(s)	14, 201, 584
DpnI	GATC	4 cut(s)	120, 302, 329, 480
DpnII	GATC	4 cut(s)	118, 300, 327, 478
DrdI	GACNNNNNNGTC	1 cut(s)	71
DseDI	GACNNNNNNGTC	1 cut(s)	71
EaeI	YGGCCR	1 cut(s)	792
Eam1104I	CTCTTC	2 cut(s)	235, 580
EarI	CTCTTC	2 cut(s)	235, 580
Eco47I	GGWCC	2 cut(s)	64, 519
Eco57I	CTGAAG	1 cut(s)	288
Eco88I	CYCGRG	1 cut(s)	352
EcoNI	CCTNNNNNAGG	1 cut(s)	129
EcoRII	CCWGG	3 cut(s)	103, 159, 498
Esp3I	CGTCTC	1 cut(s)	79
FaeI	CATG	7 cut(s)	56, 157, 212, 460, 519, 713, 778
FaqI	GGGAC	2 cut(s)	625, 773
FatI	CATG	7 cut(s)	52, 153, 208, 456, 515, 709, 774
FokI	GGATG	4 cut(s)	108, 241, 632, 749
FspBI	CTAG	5 cut(s)	80, 315, 369, 464, 651
GlaI	GCGC	1 cut(s)	373
GsuI	CTGGAG	1 cut(s)	429
HaeIII	GGCC	4 cut(s)	503, 655, 715, 794
HhaI	GCGC	1 cut(s)	374
Hin1II	CATG	7 cut(s)	56, 157, 212, 460, 519, 713, 778
Hin6I	GCGC	1 cut(s)	372
HinP1I	GCGC	1 cut(s)	372
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	6 cut(s)	111, 246, 413, 423, 512, 572
HphI	GGTGA	3 cut(s)	27, 90, 167
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	4 cut(s)	259, 361, 571, 811
Hpy188III	TCNNGA	2 cut(s)	352, 509
Hpy8I	GTNNAC	1 cut(s)	280
HpyAV	CCTTC	4 cut(s)	206, 321, 536, 545
HpyCH4III	ACNGT	3 cut(s)	18, 185, 583
HpyCH4IV	ACGT	1 cut(s)	641
HpyCH4V	TGCA	1 cut(s)	677
HpyF10VI	GCNNNNNNNGC	3 cut(s)	552, 561, 780
HpySE526I	ACGT	1 cut(s)	641
Hsp92II	CATG	7 cut(s)	56, 157, 212, 460, 519, 713, 778
HspAI	GCGC	1 cut(s)	372
Kzo9I	GATC	4 cut(s)	118, 300, 327, 478
LmnI	GCTCC	1 cut(s)	569
LweI	GCATC	2 cut(s)	41, 177
MaeI	CTAG	5 cut(s)	80, 315, 369, 464, 651
MaeII	ACGT	1 cut(s)	641
MaeIII	GTNAC	3 cut(s)	47, 145, 288
MalI	GATC	4 cut(s)	120, 302, 329, 480
MboI	GATC	4 cut(s)	118, 300, 327, 478
MboII	GAAGA	3 cut(s)	252, 281, 567
MfeI	CAATTG	1 cut(s)	753
MlsI	TGGCCA	1 cut(s)	794
MluCI	AATT	2 cut(s)	86, 753
MluNI	TGGCCA	1 cut(s)	794
MlyI	GAGTC	4 cut(s)	422, 432, 521, 566
Mox20I	TGGCCA	1 cut(s)	794
MroXI	GAANNNNTTC	1 cut(s)	782
MscI	TGGCCA	1 cut(s)	794
Msp20I	TGGCCA	1 cut(s)	794
MspR9I	CCNGG	3 cut(s)	105, 161, 500
MunI	CAATTG	1 cut(s)	753
MvaI	CCWGG	3 cut(s)	105, 161, 500
MwoI	GCNNNNNNNGC	3 cut(s)	552, 561, 780
NdeII	GATC	4 cut(s)	118, 300, 327, 478
NlaIII	CATG	7 cut(s)	56, 157, 212, 460, 519, 713, 778
NlaIV	GGNNCC	2 cut(s)	66, 684
NmuCI	GTSAC	1 cut(s)	47
NspI	RCATGY	1 cut(s)	157
NspV	TTCGAA	1 cut(s)	786
PaeR7I	CTCGAG	1 cut(s)	352
PciI	ACATGT	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	782
PfeI	GAWTC	2 cut(s)	111, 246
PflMI	CCANNNNNTGG	1 cut(s)	801
PleI	GAGTC	4 cut(s)	421, 431, 520, 566
PpsI	GAGTC	4 cut(s)	421, 431, 520, 566
PscI	ACATGT	1 cut(s)	153
Psp6I	CCWGG	3 cut(s)	103, 159, 498
PspGI	CCWGG	3 cut(s)	103, 159, 498
PspN4I	GGNNCC	2 cut(s)	66, 684
PspPI	GGNCC	3 cut(s)	64, 519, 713
RsaI	GTAC	3 cut(s)	15, 202, 585
RsaNI	GTAC	3 cut(s)	14, 201, 584
Sau3AI	GATC	4 cut(s)	118, 300, 327, 478
Sau96I	GGNCC	3 cut(s)	64, 519, 713
SchI	GAGTC	4 cut(s)	422, 432, 521, 566
ScrFI	CCNGG	3 cut(s)	105, 161, 500
SfaNI	GCATC	2 cut(s)	41, 177
Sfr274I	CTCGAG	1 cut(s)	352
SfuI	TTCGAA	1 cut(s)	786
SinI	GGWCC	2 cut(s)	64, 519
SlaI	CTCGAG	1 cut(s)	352
SmlI	CTYRAG	1 cut(s)	352
SmoI	CTYRAG	1 cut(s)	352
Sse9I	AATT	2 cut(s)	86, 753
SsiI	CCGC	1 cut(s)	522
SspMI	CTAG	5 cut(s)	80, 315, 369, 464, 651
StyD4I	CCNGG	3 cut(s)	103, 159, 498
TaaI	ACNGT	3 cut(s)	18, 185, 583
TaiI	ACGT	1 cut(s)	644
TaqI	TCGA	4 cut(s)	330, 353, 477, 786
TasI	AATT	2 cut(s)	86, 753
TatI	WGTACW	1 cut(s)	583
TfiI	GAWTC	2 cut(s)	111, 246
TscAI	CASTG	1 cut(s)	230
TseFI	GTSAC	1 cut(s)	47
Tsp45I	GTSAC	1 cut(s)	47
TspDTI	ATGAA	7 cut(s)	17, 225, 242, 564, 636, 740, 791
TspGWI	ACGGA	1 cut(s)	82
TspRI	CASTG	1 cut(s)	230
Van91I	CCANNNNNTGG	1 cut(s)	801
VpaK11BI	GGWCC	2 cut(s)	64, 519
XagI	CCTNNNNNAGG	1 cut(s)	129
XapI	RAATTY	1 cut(s)	86
XceI	RCATGY	1 cut(s)	157
XcmI	CCANNNNNNNNNTGG	1 cut(s)	185
XhoI	CTCGAG	1 cut(s)	352
XmnI	GAANNNNTTC	1 cut(s)	782
XspI	CTAG	5 cut(s)	80, 315, 369, 464, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.