Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0007048

Physical Location & Seq

Genomic Coordinates Forward (+)

32874137 .. 32876664

Gene Structure 2528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008595

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGTCTGGTTCAGATCAATCCCCTTCTTTCAACACACCCAGAACGGTGATCAAGAAGGTCCTGGCCAAGTCCCAGAGTGAGGGTGATGGAGCTGTTGTCAGAAGAGCCATTGGAATCTCTGAGTTGAGGAACCTGGATCCGTTTCTCATGCTAGATGACTTTACAGTTTCCCCTCCTGCCGGATTTCCAGATCATCCACATAGAGGATTCGAAACTGTCACATATGTGCTACAGGGAGGCATCACTCACCAAGACTTTGCAGGGCACAAGGGTACAATTGGAGCTGGAGATGTGCAGTGGATGACCGCAGGCAGGGGAATAGTTCACTCTGAGATGCCTGCAGGAGCAGGACGCAATAATGGTTTGCAGCTTTGGATCAATTTAGCCCGCAAAGACAAAATGGTTGAGCCTAGATACCAAGAACTCCTAAGCAAGGAGATAAAGCGGGCCAAAAAAGATGGAGTTGAAGTTCGAGTGATAGCAGGAGAAACAATGGGAGTGAGCTCTCCTGTTTATACCCGAACACCAACATTTTTCTTTGACTTCACCCTTAAGCCTAAAGCTGTTTTGCATCAAAGCATACCAGAAAGTTGGACCTCCTTTGTTTACATTATGGAAGGAGAAGGATTTTTTGGGTCAGCGCATGCATCAGCTCATCATATTCTGGTTCTGGGTCCTGGAGATGGCGTAAGCGTATGCAACAAGTCATCGGAGCCGCTGAGGTTTGTGTTGATCGGAGGGCAGCCAATAAATGAACCAGTGGTTCAGCATGGGCCTTTTGTGATGAACACACAAGCTGAAATCGAACAAACCATTAAGGACTATCATTATGGCCAGAATGGGTTTGAAAGTGCCAAGTCTTGGCGGTCTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009785 GO:0009892 GO:0009987 GO:0010033 GO:0010466 GO:0010605 GO:0016020 GO:0019222 GO:0023052 GO:0030162 GO:0030234 GO:0030414 GO:0030522 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032870 GO:0033993 GO:0042221 GO:0042742 GO:0043086 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051704 GO:0051707 GO:0051716 GO:0052547 GO:0060255 GO:0061134 GO:0065007 GO:0065009 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0071944 GO:0080090 GO:0097305 GO:0097306 GO:0098542 GO:0098772 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pirin Pirin_C

Protein Analysis

292

Amino Acids

31.91

Weight (kDa)

6.84

Isoelectric Point (pI)

49.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pirin	PF02678	33 - 126	1e-31	Pirin
Pirin_C	PF05726	180 - 280	5.2e-32	Pirin C-terminal cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43120 AT2G43120 AT3G59220 AT3G59260
fragaria_vesca	FvH4_4g11770 FvH4_4g11770 FvH4_4g11770 FvH4_4g11770
malus_domestica	MD04G1033300.v1.1
prunus_persica	Prupe.1G181100_v2.0.a1
pyrus_communis	pycom04g02740 pycom04g02780
rosa_chinensis	RchiOBHm_Chr4g0409021
rosa_laevigata	RLG00000008595
rosa_multiflora	Rmu_sc0000121.1_g000003 Rmu_sc0006766.1_g000003 Rmu_sc0017774.1_g000001 Rmu_sc0022473.1_g000002 Rmu_sc0026065.1_g000003
rosa_roxburghii	Rroxscaffold_5G00353500
rosa_rugosa	Rorug04G0089800
rosa_samantha	Rh4AG153500 Rh4BG151600 Rh4CG162000 Rh4DG146900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	861
AciI	CCGC	5 cut(s)	306, 388, 445, 716, 865
AclWI	GGATC	3 cut(s)	131, 144, 383
AcoI	YGGCCR	2 cut(s)	63, 832
AfaI	GTAC	1 cut(s)	274
AfiI	CCNNNNNNNGG	7 cut(s)	79, 179, 203, 312, 433, 683, 861
AflII	CTTAAG	1 cut(s)	551
AgsI	TTSAA	3 cut(s)	31, 467, 848
AjnI	CCWGG	3 cut(s)	60, 132, 676
AjuI	GAANNNNNNNTTGG	2 cut(s)	615, 647
AleI	CACNNNNGTG	1 cut(s)	224
AloI	GAACNNNNNNTCC	2 cut(s)	453, 485
AluBI	AGCT	7 cut(s)	92, 284, 370, 504, 563, 653, 797
AluI	AGCT	7 cut(s)	92, 284, 370, 504, 563, 653, 797
Alw21I	GWGCWC	1 cut(s)	506
AlwI	GGATC	3 cut(s)	131, 144, 383
AoxI	GGCC	4 cut(s)	63, 447, 773, 832
ApeKI	GCWGC	2 cut(s)	367, 742
AspLEI	GCGC	1 cut(s)	643
AspS9I	GGNCC	5 cut(s)	58, 447, 594, 674, 773
AsuHPI	GGTGA	4 cut(s)	58, 95, 239, 538
AsuII	TTCGAA	1 cut(s)	210
AvaII	GGWCC	3 cut(s)	58, 594, 674
BaeGI	GKGCMC	1 cut(s)	267
BalI	TGGCCA	2 cut(s)	65, 834
BamHI	GGATCC	1 cut(s)	136
BanII	GRGCYC	1 cut(s)	506
Bbv12I	GWGCWC	1 cut(s)	506
BbvCI	CCTCAGC	1 cut(s)	719
BbvI	GCAGC	2 cut(s)	379, 754
BccI	CCATC	3 cut(s)	80, 452, 677
BciT130I	CCWGG	3 cut(s)	62, 134, 678
BclI	TGATCA	1 cut(s)	48
BfaI	CTAG	2 cut(s)	152, 411
BfmI	CTRYAG	2 cut(s)	230, 339
BfrI	CTTAAG	1 cut(s)	551
BisI	GCNGC	3 cut(s)	368, 716, 743
BlsI	GCNGC	3 cut(s)	369, 717, 744
Bme1390I	CCNGG	3 cut(s)	62, 134, 678
Bme18I	GGWCC	3 cut(s)	58, 594, 674
BmgT120I	GGNCC	5 cut(s)	58, 447, 594, 674, 773
BmiI	GGNNCC	4 cut(s)	131, 138, 675, 714
BmrFI	CCNGG	3 cut(s)	62, 134, 678
BmsI	GCATC	4 cut(s)	249, 324, 580, 656
BpmI	CTGGAG	2 cut(s)	306, 699
Bpu10I	CCTNAGC	2 cut(s)	428, 719
Bpu14I	TTCGAA	1 cut(s)	210
BsaXI	ACNNNNNCTCC	6 cut(s)	81, 111, 453, 483, 672, 702
Bsc4I	CCNNNNNNNGG	7 cut(s)	79, 179, 203, 312, 433, 683, 861
Bse1I	ACTGG	1 cut(s)	758
BseBI	CCWGG	3 cut(s)	62, 134, 678
BseGI	GGATG	2 cut(s)	193, 306
BseLI	CCNNNNNNNGG	7 cut(s)	79, 179, 203, 312, 433, 683, 861
BseMII	CTCAG	3 cut(s)	111, 321, 710
BseNI	ACTGG	1 cut(s)	758
BseSI	GKGCMC	1 cut(s)	267
BseXI	GCAGC	2 cut(s)	379, 754
BsgI	GTGCAG	1 cut(s)	314
BshFI	GGCC	4 cut(s)	65, 449, 775, 834
BsiHKAI	GWGCWC	1 cut(s)	506
BsiSI	CCGG	1 cut(s)	180
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	7 cut(s)	79, 179, 203, 312, 433, 683, 861
BsmFI	GGGAC	1 cut(s)	55
BsnI	GGCC	4 cut(s)	65, 449, 775, 834
Bsp119I	TTCGAA	1 cut(s)	210
Bsp1286I	GDGCHC	2 cut(s)	267, 506
Bsp143I	GATC	6 cut(s)	13, 48, 136, 190, 375, 732
BspACI	CCGC	5 cut(s)	306, 388, 445, 716, 865
BspANI	GGCC	4 cut(s)	65, 449, 775, 834
BspCNI	CTCAG	3 cut(s)	112, 322, 711
BspLI	GGNNCC	4 cut(s)	131, 138, 675, 714
BspMAI	CTGCAG	1 cut(s)	343
BspPI	GGATC	3 cut(s)	131, 144, 383
BspQI	GCTCTTC	1 cut(s)	97
BspT104I	TTCGAA	1 cut(s)	210
BspTI	CTTAAG	1 cut(s)	551
BsrI	ACTGG	1 cut(s)	758
BssMI	GATC	6 cut(s)	13, 48, 136, 190, 375, 732
Bst2UI	CCWGG	3 cut(s)	62, 134, 678
Bst4CI	ACNGT	3 cut(s)	46, 166, 217
Bst6I	CTCTTC	1 cut(s)	97
BstAFI	CTTAAG	1 cut(s)	551
BstBI	TTCGAA	1 cut(s)	210
BstC8I	GCNNGC	5 cut(s)	310, 339, 388, 447, 645
BstDEI	CTNAG	4 cut(s)	120, 330, 428, 719
BstENI	CCTNNNNNAGG	1 cut(s)	431
BstF5I	GGATG	2 cut(s)	193, 306
BstHHI	GCGC	1 cut(s)	643
BstKTI	GATC	6 cut(s)	16, 51, 139, 193, 378, 735
BstMBI	GATC	6 cut(s)	13, 48, 136, 190, 375, 732
BstNI	CCWGG	3 cut(s)	62, 134, 678
BstNSI	RCATGY	1 cut(s)	647
BstSCI	CCNGG	3 cut(s)	60, 132, 676
BstSFI	CTRYAG	2 cut(s)	230, 339
BstSLI	GKGCMC	1 cut(s)	267
BstV1I	GCAGC	2 cut(s)	379, 754
BstX2I	RGATCY	1 cut(s)	136
BstXI	CCANNNNNNTGG	1 cut(s)	591
BstYI	RGATCY	1 cut(s)	136
BsuRI	GGCC	4 cut(s)	65, 449, 775, 834
BtsCI	GGATG	2 cut(s)	193, 306
BtsI	GCAGTG	1 cut(s)	302
BtsIMutI	CAGTG	2 cut(s)	302, 765
Cac8I	GCNNGC	5 cut(s)	310, 339, 388, 447, 645
CfoI	GCGC	1 cut(s)	643
Cfr13I	GGNCC	5 cut(s)	58, 447, 594, 674, 773
CseI	GACGC	1 cut(s)	360
Csp6I	GTAC	1 cut(s)	273
CviAII	CATG	3 cut(s)	148, 644, 770
CviQI	GTAC	1 cut(s)	273
DdeI	CTNAG	4 cut(s)	120, 330, 428, 719
DpnI	GATC	6 cut(s)	15, 50, 138, 192, 377, 734
DpnII	GATC	6 cut(s)	13, 48, 136, 190, 375, 732
EaeI	YGGCCR	2 cut(s)	63, 832
Eam1104I	CTCTTC	1 cut(s)	97
EarI	CTCTTC	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	504
Eco24I	GRGCYC	1 cut(s)	506
Eco47I	GGWCC	3 cut(s)	58, 594, 674
Eco53kI	GAGCTC	1 cut(s)	504
EcoICRI	GAGCTC	1 cut(s)	504
EcoNI	CCTNNNNNAGG	1 cut(s)	431
EcoO109I	RGGNCCY	2 cut(s)	58, 674
EcoRII	CCWGG	3 cut(s)	60, 132, 676
EcoT22I	ATGCAT	1 cut(s)	649
EcoT38I	GRGCYC	1 cut(s)	506
FaeI	CATG	3 cut(s)	151, 647, 773
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	3 cut(s)	147, 643, 769
FauI	CCCGC	2 cut(s)	395, 438
FauNDI	CATATG	1 cut(s)	223
FbaI	TGATCA	1 cut(s)	48
Fnu4HI	GCNGC	3 cut(s)	368, 716, 743
FokI	GGATG	2 cut(s)	180, 313
FriOI	GRGCYC	1 cut(s)	506
Fsp4HI	GCNGC	3 cut(s)	368, 716, 743
FspBI	CTAG	2 cut(s)	152, 411
GlaI	GCGC	1 cut(s)	642
GluI	GCNGC	3 cut(s)	368, 716, 743
GsuI	CTGGAG	2 cut(s)	306, 699
HaeIII	GGCC	4 cut(s)	65, 449, 775, 834
HapII	CCGG	1 cut(s)	180
HgaI	GACGC	1 cut(s)	360
HhaI	GCGC	1 cut(s)	643
Hin1II	CATG	3 cut(s)	151, 647, 773
Hin6I	GCGC	1 cut(s)	641
HinP1I	GCGC	1 cut(s)	641
HinfI	GANTC	2 cut(s)	114, 207
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	4 cut(s)	58, 95, 239, 538
Hpy166II	GTNNAC	2 cut(s)	325, 607
Hpy188I	TCNGA	6 cut(s)	13, 101, 121, 331, 712, 737
Hpy188III	TCNNGA	2 cut(s)	52, 188
Hpy8I	GTNNAC	2 cut(s)	325, 607
HpyAV	CCTTC	4 cut(s)	33, 49, 611, 617
HpyCH4III	ACNGT	3 cut(s)	46, 166, 217
HpyCH4V	TGCA	7 cut(s)	260, 295, 341, 367, 571, 647, 699
HpyF3I	CTNAG	4 cut(s)	120, 330, 428, 719
Hsp92II	CATG	3 cut(s)	151, 647, 773
HspAI	GCGC	1 cut(s)	641
Ksp22I	TGATCA	1 cut(s)	48
Kzo9I	GATC	6 cut(s)	13, 48, 136, 190, 375, 732
LguI	GCTCTTC	1 cut(s)	97
LmnI	GCTCC	4 cut(s)	89, 281, 344, 712
Lsp1109I	GCAGC	2 cut(s)	379, 754
LweI	GCATC	4 cut(s)	249, 324, 580, 656
MaeI	CTAG	2 cut(s)	152, 411
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	6 cut(s)	15, 50, 138, 192, 377, 734
MboI	GATC	6 cut(s)	13, 48, 136, 190, 375, 732
MboII	GAAGA	1 cut(s)	114
MfeI	CAATTG	1 cut(s)	276
MflI	RGATCY	1 cut(s)	136
MhlI	GDGCHC	2 cut(s)	267, 506
MlsI	TGGCCA	2 cut(s)	65, 834
MluCI	AATT	2 cut(s)	276, 379
MluNI	TGGCCA	2 cut(s)	65, 834
MmeI	TCCRAC	1 cut(s)	572
MnlI	CCTC	8 cut(s)	73, 120, 183, 197, 230, 607, 714, 731
Mox20I	TGGCCA	2 cut(s)	65, 834
Mph1103I	ATGCAT	1 cut(s)	649
MscI	TGGCCA	2 cut(s)	65, 834
MseI	TTAA	2 cut(s)	552, 816
MslI	CAYNNNNRTG	1 cut(s)	224
Msp20I	TGGCCA	2 cut(s)	65, 834
MspA1I	CMGCKG	1 cut(s)	718
MspCI	CTTAAG	1 cut(s)	551
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	3 cut(s)	62, 134, 678
MunI	CAATTG	1 cut(s)	276
MvaI	CCWGG	3 cut(s)	62, 134, 678
NdeI	CATATG	1 cut(s)	223
NdeII	GATC	6 cut(s)	13, 48, 136, 190, 375, 732
NlaIII	CATG	3 cut(s)	151, 647, 773
NlaIV	GGNNCC	4 cut(s)	131, 138, 675, 714
NmuCI	GTSAC	1 cut(s)	217
NsiI	ATGCAT	1 cut(s)	649
NspI	RCATGY	1 cut(s)	647
NspV	TTCGAA	1 cut(s)	210
OliI	CACNNNNGTG	1 cut(s)	224
PaeI	GCATGC	1 cut(s)	647
PciSI	GCTCTTC	1 cut(s)	97
PfeI	GAWTC	2 cut(s)	114, 207
PflMI	CCANNNNNTGG	1 cut(s)	861
PfoI	TCCNGGA	1 cut(s)	676
PkrI	GCNGC	3 cut(s)	369, 717, 744
PpuMI	RGGWCCY	2 cut(s)	58, 674
Psp124BI	GAGCTC	1 cut(s)	506
Psp5II	RGGWCCY	2 cut(s)	58, 674
Psp6I	CCWGG	3 cut(s)	60, 132, 676
PspGI	CCWGG	3 cut(s)	60, 132, 676
PspN4I	GGNNCC	4 cut(s)	131, 138, 675, 714
PspPI	GGNCC	5 cut(s)	58, 447, 594, 674, 773
PspPPI	RGGWCCY	2 cut(s)	58, 674
PstI	CTGCAG	1 cut(s)	343
PsuI	RGATCY	1 cut(s)	136
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
RseI	CAYNNNNRTG	1 cut(s)	224
SacI	GAGCTC	1 cut(s)	506
SapI	GCTCTTC	1 cut(s)	97
SaqAI	TTAA	2 cut(s)	552, 816
SatI	GCNGC	3 cut(s)	368, 716, 743
Sau3AI	GATC	6 cut(s)	13, 48, 136, 190, 375, 732
Sau96I	GGNCC	5 cut(s)	58, 447, 594, 674, 773
SbfI	CCTGCAGG	1 cut(s)	343
ScrFI	CCNGG	3 cut(s)	62, 134, 678
SdaI	CCTGCAGG	1 cut(s)	343
SduI	GDGCHC	2 cut(s)	267, 506
SfaNI	GCATC	4 cut(s)	249, 324, 580, 656
SfcI	CTRYAG	2 cut(s)	230, 339
SfuI	TTCGAA	1 cut(s)	210
SinI	GGWCC	3 cut(s)	58, 594, 674
SmiMI	CAYNNNNRTG	1 cut(s)	224
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
SphI	GCATGC	1 cut(s)	647
Sse8387I	CCTGCAGG	1 cut(s)	343
Sse9I	AATT	2 cut(s)	276, 379
SsiI	CCGC	5 cut(s)	306, 388, 445, 716, 865
SspMI	CTAG	2 cut(s)	152, 411
SstI	GAGCTC	1 cut(s)	506
StyD4I	CCNGG	3 cut(s)	60, 132, 676
TaaI	ACNGT	3 cut(s)	46, 166, 217
TaqI	TCGA	3 cut(s)	210, 472, 804
TasI	AATT	2 cut(s)	276, 379
TauI	GCSGC	1 cut(s)	718
TfiI	GAWTC	2 cut(s)	114, 207
Tru1I	TTAA	2 cut(s)	552, 816
Tru9I	TTAA	2 cut(s)	552, 816
TscAI	CASTG	2 cut(s)	302, 765
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	2 cut(s)	367, 742
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	2 cut(s)	768, 800
TspGWI	ACGGA	1 cut(s)	129
TspRI	CASTG	2 cut(s)	302, 765
Van91I	CCANNNNNTGG	1 cut(s)	861
Vha464I	CTTAAG	1 cut(s)	551
VpaK11BI	GGWCC	3 cut(s)	58, 594, 674
XagI	CCTNNNNNAGG	1 cut(s)	431
XceI	RCATGY	1 cut(s)	647
XspI	CTAG	2 cut(s)	152, 411
Zsp2I	ATGCAT	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.