Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0007048

Physical Location & Seq

Genomic Coordinates Reverse (-)

31327677 .. 31330301

Gene Structure 2625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00353500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGCGTATGAGAGCTATAGCAAATTTTGCACGCAATAGCTTACTCTTCACTGCAAAAACCACCACCACCACCACCAGAAGCAAGAACCATTTGAATTTCAGGGTCCCCTTCTTCATCAGAAACCACACCATGTCTGGTTCAGATCAATCCCCTTCTTTCGACACACCCAGAATGGTGATCAAGAAGGTCCTGGCCAAGTCCCAGAGTGAGGGTGATGGAGCTGTTGTCAGAAGAGCCATTGGAATCTCTGAGTTGAGGAACCTGGATCCGTTTCTCATGCTAGATGACTTTACAGCAACACCTACTTGGTGTTCTGGATTTCAGCTTCACGAGGTTCTGAAATTGCGGTTTTTATGTTTCCAGGGAGGCATCACTCACCAAGACTTTGCAGGGCACAAGGGTACAATTGGAGCTGGAGATGTGCAGTGGATGACCGCAGGCAGGGGAATAGTTCACTCTGAGATGCCTGCAGGAGCAGGACCCAACAATGGTTTGCAGCTTTGGATCAATTTAGCCCGCAAAGACAAAATGGTTGAGCCTAGATATCAAGAACTCCTAAGCAAGGAGATAAAGCGGGCAAAAAAAGATGGAGTTGAAGTTCGAGTGATAGCAGGAGAAACAATGGGAGTGAGCTCTCCTGTTTATACCCGAACACCAACATTTTTCTTTGACTTCACCCTTAAGCCTAAAGCTATTTTGCATCAAAGCATACCAGAAACGCATGCATCAGCTCATCATATTCTGGTTCTGGGTCCTGGAGATGGCGTAAGCGTATGCAACAAGTCATCGGAGCCGCTGAGGTTTGTGTTGATCGGAGGGCAGCCAATAAATGAACCAGTGGTTCAGCATGGGCCTTTTGTGATGAACACACAAGCTGAAATCGAACAAACCATTAAGGACTATCATTATGGCCAGAATGGGTTTGAAAGTGCCAAGTCTTGGCGGTCTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009785 GO:0009892 GO:0009987 GO:0010033 GO:0010466 GO:0010605 GO:0016020 GO:0019222 GO:0023052 GO:0030162 GO:0030234 GO:0030414 GO:0030522 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032870 GO:0033993 GO:0042221 GO:0042742 GO:0043086 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051704 GO:0051707 GO:0051716 GO:0052547 GO:0060255 GO:0061134 GO:0065007 GO:0065009 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0071944 GO:0080090 GO:0097305 GO:0097306 GO:0098542 GO:0098772 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pirin Pirin_C

Protein Analysis

317

Amino Acids

35.24

Weight (kDa)

9.54

Isoelectric Point (pI)

45.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pirin	PF02678	76 - 169	2.6e-20	Pirin
Pirin_C	PF05726	241 - 306	3.3e-21	Pirin C-terminal cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43120 AT2G43120 AT3G59220 AT3G59260
fragaria_vesca	FvH4_4g11770 FvH4_4g11770 FvH4_4g11770 FvH4_4g11770
malus_domestica	MD04G1033300.v1.1
prunus_persica	Prupe.1G181100_v2.0.a1
pyrus_communis	pycom04g02740 pycom04g02780
rosa_chinensis	RchiOBHm_Chr4g0409021
rosa_laevigata	RLG00000008595
rosa_multiflora	Rmu_sc0000121.1_g000003 Rmu_sc0006766.1_g000003 Rmu_sc0017774.1_g000001 Rmu_sc0022473.1_g000002 Rmu_sc0026065.1_g000003
rosa_roxburghii	Rroxscaffold_5G00353500
rosa_rugosa	Rorug04G0089800
rosa_samantha	Rh4AG153500 Rh4BG151600 Rh4CG162000 Rh4DG146900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	939
AciI	CCGC	6 cut(s)	346, 435, 517, 574, 794, 943
AclWI	GGATC	3 cut(s)	260, 273, 512
AcoI	YGGCCR	2 cut(s)	192, 910
AcsI	RAATTY	2 cut(s)	22, 94
AfaI	GTAC	1 cut(s)	403
AfiI	CCNNNNNNNGG	6 cut(s)	208, 441, 488, 562, 761, 939
AflII	CTTAAG	1 cut(s)	680
AgsI	TTSAA	3 cut(s)	94, 596, 926
AjnI	CCWGG	4 cut(s)	189, 261, 360, 754
AloI	GAACNNNNNNTCC	2 cut(s)	582, 614
Alw21I	GWGCWC	1 cut(s)	635
AlwI	GGATC	3 cut(s)	260, 273, 512
AoxI	GGCC	3 cut(s)	192, 851, 910
ApeKI	GCWGC	2 cut(s)	496, 820
ApoI	RAATTY	2 cut(s)	22, 94
AspS9I	GGNCC	5 cut(s)	103, 187, 479, 752, 851
AsuHPI	GGTGA	4 cut(s)	187, 224, 368, 667
AvaII	GGWCC	4 cut(s)	103, 187, 479, 752
BaeGI	GKGCMC	1 cut(s)	396
BalI	TGGCCA	2 cut(s)	194, 912
BamHI	GGATCC	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	635
BauI	CACGAG	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	635
BbvCI	CCTCAGC	1 cut(s)	797
BbvI	GCAGC	2 cut(s)	508, 832
BccI	CCATC	3 cut(s)	209, 581, 755
BciT130I	CCWGG	4 cut(s)	191, 263, 362, 756
BclI	TGATCA	1 cut(s)	177
BfaI	CTAG	2 cut(s)	281, 540
BfmI	CTRYAG	2 cut(s)	15, 468
BfrI	CTTAAG	1 cut(s)	680
BisI	GCNGC	3 cut(s)	497, 794, 821
BlsI	GCNGC	3 cut(s)	498, 795, 822
Bme1390I	CCNGG	4 cut(s)	191, 263, 362, 756
Bme18I	GGWCC	4 cut(s)	103, 187, 479, 752
BmgT120I	GGNCC	5 cut(s)	103, 187, 479, 752, 851
BmiI	GGNNCC	7 cut(s)	104, 105, 260, 267, 481, 753, 792
BmrFI	CCNGG	4 cut(s)	191, 263, 362, 756
BmsI	GCATC	4 cut(s)	378, 453, 709, 734
BpmI	CTGGAG	2 cut(s)	435, 777
Bpu10I	CCTNAGC	2 cut(s)	557, 797
BsaJI	CCNNGG	1 cut(s)	361
BsaXI	ACNNNNNCTCC	6 cut(s)	210, 240, 582, 612, 750, 780
Bsc4I	CCNNNNNNNGG	6 cut(s)	208, 441, 488, 562, 761, 939
Bse1I	ACTGG	1 cut(s)	836
BseBI	CCWGG	4 cut(s)	191, 263, 362, 756
BseDI	CCNNGG	1 cut(s)	361
BseGI	GGATG	1 cut(s)	435
BseLI	CCNNNNNNNGG	6 cut(s)	208, 441, 488, 562, 761, 939
BseMII	CTCAG	3 cut(s)	240, 450, 788
BseNI	ACTGG	1 cut(s)	836
BseSI	GKGCMC	1 cut(s)	396
BseXI	GCAGC	2 cut(s)	508, 832
BsgI	GTGCAG	1 cut(s)	443
BshFI	GGCC	3 cut(s)	194, 853, 912
BsiHKAI	GWGCWC	1 cut(s)	635
BslFI	GGGAC	2 cut(s)	89, 184
BslI	CCNNNNNNNGG	6 cut(s)	208, 441, 488, 562, 761, 939
BsmFI	GGGAC	2 cut(s)	89, 184
BsnI	GGCC	3 cut(s)	194, 853, 912
Bsp1286I	GDGCHC	2 cut(s)	396, 635
Bsp143I	GATC	5 cut(s)	142, 177, 265, 504, 810
BspACI	CCGC	6 cut(s)	346, 435, 517, 574, 794, 943
BspANI	GGCC	3 cut(s)	194, 853, 912
BspCNI	CTCAG	3 cut(s)	241, 451, 789
BspLI	GGNNCC	7 cut(s)	104, 105, 260, 267, 481, 753, 792
BspMAI	CTGCAG	1 cut(s)	472
BspPI	GGATC	3 cut(s)	260, 273, 512
BspQI	GCTCTTC	1 cut(s)	226
BspTI	CTTAAG	1 cut(s)	680
BsrI	ACTGG	1 cut(s)	836
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	5 cut(s)	142, 177, 265, 504, 810
BssSI	CACGAG	1 cut(s)	329
Bst2BI	CACGAG	1 cut(s)	329
Bst2UI	CCWGG	4 cut(s)	191, 263, 362, 756
Bst6I	CTCTTC	2 cut(s)	50, 226
BstAFI	CTTAAG	1 cut(s)	680
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstC8I	GCNNGC	6 cut(s)	31, 439, 468, 517, 576, 723
BstDEI	CTNAG	4 cut(s)	249, 459, 557, 797
BstENI	CCTNNNNNAGG	1 cut(s)	560
BstF5I	GGATG	1 cut(s)	435
BstKTI	GATC	5 cut(s)	145, 180, 268, 507, 813
BstMBI	GATC	5 cut(s)	142, 177, 265, 504, 810
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNI	CCWGG	4 cut(s)	191, 263, 362, 756
BstNSI	RCATGY	1 cut(s)	725
BstSCI	CCNGG	4 cut(s)	189, 261, 360, 754
BstSFI	CTRYAG	2 cut(s)	15, 468
BstSLI	GKGCMC	1 cut(s)	396
BstV1I	GCAGC	2 cut(s)	508, 832
BstX2I	RGATCY	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	265
BsuRI	GGCC	3 cut(s)	194, 853, 912
BtsCI	GGATG	1 cut(s)	435
BtsI	GCAGTG	2 cut(s)	48, 431
BtsIMutI	CAGTG	3 cut(s)	48, 431, 843
Cac8I	GCNNGC	6 cut(s)	31, 439, 468, 517, 576, 723
Cfr13I	GGNCC	5 cut(s)	103, 187, 479, 752, 851
Csp6I	GTAC	1 cut(s)	402
CviAII	CATG	4 cut(s)	130, 277, 722, 848
CviQI	GTAC	1 cut(s)	402
DdeI	CTNAG	4 cut(s)	249, 459, 557, 797
DpnI	GATC	5 cut(s)	144, 179, 267, 506, 812
DpnII	GATC	5 cut(s)	142, 177, 265, 504, 810
EaeI	YGGCCR	2 cut(s)	192, 910
Eam1104I	CTCTTC	2 cut(s)	50, 226
EarI	CTCTTC	2 cut(s)	50, 226
Ecl136II	GAGCTC	1 cut(s)	633
Eco24I	GRGCYC	1 cut(s)	635
Eco32I	GATATC	1 cut(s)	545
Eco47I	GGWCC	4 cut(s)	103, 187, 479, 752
Eco53kI	GAGCTC	1 cut(s)	633
EcoICRI	GAGCTC	1 cut(s)	633
EcoNI	CCTNNNNNAGG	1 cut(s)	560
EcoO109I	RGGNCCY	4 cut(s)	103, 187, 479, 752
EcoRII	CCWGG	4 cut(s)	189, 261, 360, 754
EcoRV	GATATC	1 cut(s)	545
EcoT22I	ATGCAT	1 cut(s)	727
EcoT38I	GRGCYC	1 cut(s)	635
FaeI	CATG	4 cut(s)	133, 280, 725, 851
FaqI	GGGAC	2 cut(s)	89, 184
FatI	CATG	4 cut(s)	129, 276, 721, 847
FauI	CCCGC	2 cut(s)	524, 567
FbaI	TGATCA	1 cut(s)	177
Fnu4HI	GCNGC	3 cut(s)	497, 794, 821
FokI	GGATG	1 cut(s)	442
FriOI	GRGCYC	1 cut(s)	635
Fsp4HI	GCNGC	3 cut(s)	497, 794, 821
FspBI	CTAG	2 cut(s)	281, 540
GluI	GCNGC	3 cut(s)	497, 794, 821
GsuI	CTGGAG	2 cut(s)	435, 777
HaeIII	GGCC	3 cut(s)	194, 853, 912
Hin1II	CATG	4 cut(s)	133, 280, 725, 851
HinfI	GANTC	1 cut(s)	243
HphI	GGTGA	4 cut(s)	187, 224, 368, 667
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188I	TCNGA	8 cut(s)	119, 142, 230, 250, 339, 460, 790, 815
Hpy188III	TCNNGA	4 cut(s)	181, 315, 329, 548
Hpy8I	GTNNAC	1 cut(s)	454
HpyAV	CCTTC	3 cut(s)	118, 162, 178
HpyCH4V	TGCA	9 cut(s)	29, 53, 389, 424, 470, 496, 700, 725, 777
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	4 cut(s)	249, 459, 557, 797
Hsp92II	CATG	4 cut(s)	133, 280, 725, 851
KflI	GGGWCCC	1 cut(s)	103
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	5 cut(s)	142, 177, 265, 504, 810
LguI	GCTCTTC	1 cut(s)	226
LmnI	GCTCC	4 cut(s)	218, 410, 473, 790
Lsp1109I	GCAGC	2 cut(s)	508, 832
LweI	GCATC	4 cut(s)	378, 453, 709, 734
MaeI	CTAG	2 cut(s)	281, 540
MalI	GATC	5 cut(s)	144, 179, 267, 506, 812
MboI	GATC	5 cut(s)	142, 177, 265, 504, 810
MboII	GAAGA	3 cut(s)	37, 103, 243
MfeI	CAATTG	1 cut(s)	405
MflI	RGATCY	1 cut(s)	265
MhlI	GDGCHC	2 cut(s)	396, 635
MlsI	TGGCCA	2 cut(s)	194, 912
MluCI	AATT	5 cut(s)	22, 94, 341, 405, 508
MluNI	TGGCCA	2 cut(s)	194, 912
MnlI	CCTC	6 cut(s)	202, 249, 325, 359, 792, 809
Mox20I	TGGCCA	2 cut(s)	194, 912
Mph1103I	ATGCAT	1 cut(s)	727
MscI	TGGCCA	2 cut(s)	194, 912
MseI	TTAA	2 cut(s)	681, 894
Msp20I	TGGCCA	2 cut(s)	194, 912
MspA1I	CMGCKG	1 cut(s)	796
MspCI	CTTAAG	1 cut(s)	680
MspR9I	CCNGG	4 cut(s)	191, 263, 362, 756
MunI	CAATTG	1 cut(s)	405
MvaI	CCWGG	4 cut(s)	191, 263, 362, 756
MwoI	GCNNNNNNNGC	1 cut(s)	26
NdeII	GATC	5 cut(s)	142, 177, 265, 504, 810
NlaIII	CATG	4 cut(s)	133, 280, 725, 851
NlaIV	GGNNCC	7 cut(s)	104, 105, 260, 267, 481, 753, 792
NsiI	ATGCAT	1 cut(s)	727
NspI	RCATGY	1 cut(s)	725
PaeI	GCATGC	1 cut(s)	725
PciSI	GCTCTTC	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	243
PflMI	CCANNNNNTGG	1 cut(s)	939
PfoI	TCCNGGA	1 cut(s)	754
PkrI	GCNGC	3 cut(s)	498, 795, 822
PpuMI	RGGWCCY	4 cut(s)	103, 187, 479, 752
Psp124BI	GAGCTC	1 cut(s)	635
Psp5II	RGGWCCY	4 cut(s)	103, 187, 479, 752
Psp6I	CCWGG	4 cut(s)	189, 261, 360, 754
PspGI	CCWGG	4 cut(s)	189, 261, 360, 754
PspN4I	GGNNCC	7 cut(s)	104, 105, 260, 267, 481, 753, 792
PspPI	GGNCC	5 cut(s)	103, 187, 479, 752, 851
PspPPI	RGGWCCY	4 cut(s)	103, 187, 479, 752
PstI	CTGCAG	1 cut(s)	472
PsuI	RGATCY	1 cut(s)	265
RsaI	GTAC	1 cut(s)	403
RsaNI	GTAC	1 cut(s)	402
SacI	GAGCTC	1 cut(s)	635
SapI	GCTCTTC	1 cut(s)	226
SaqAI	TTAA	2 cut(s)	681, 894
SatI	GCNGC	3 cut(s)	497, 794, 821
Sau3AI	GATC	5 cut(s)	142, 177, 265, 504, 810
Sau96I	GGNCC	5 cut(s)	103, 187, 479, 752, 851
SbfI	CCTGCAGG	1 cut(s)	472
ScrFI	CCNGG	4 cut(s)	191, 263, 362, 756
SdaI	CCTGCAGG	1 cut(s)	472
SduI	GDGCHC	2 cut(s)	396, 635
SfaNI	GCATC	4 cut(s)	378, 453, 709, 734
SfcI	CTRYAG	2 cut(s)	15, 468
SinI	GGWCC	4 cut(s)	103, 187, 479, 752
SmlI	CTYRAG	1 cut(s)	680
SmoI	CTYRAG	1 cut(s)	680
SphI	GCATGC	1 cut(s)	725
Sse8387I	CCTGCAGG	1 cut(s)	472
Sse9I	AATT	5 cut(s)	22, 94, 341, 405, 508
SsiI	CCGC	6 cut(s)	346, 435, 517, 574, 794, 943
SspMI	CTAG	2 cut(s)	281, 540
SstI	GAGCTC	1 cut(s)	635
StyD4I	CCNGG	4 cut(s)	189, 261, 360, 754
TaqI	TCGA	3 cut(s)	159, 601, 882
TasI	AATT	5 cut(s)	22, 94, 341, 405, 508
TauI	GCSGC	1 cut(s)	796
TfiI	GAWTC	1 cut(s)	243
Tru1I	TTAA	2 cut(s)	681, 894
Tru9I	TTAA	2 cut(s)	681, 894
TscAI	CASTG	3 cut(s)	55, 431, 843
TseI	GCWGC	2 cut(s)	496, 820
TspDTI	ATGAA	3 cut(s)	103, 846, 878
TspGWI	ACGGA	1 cut(s)	258
TspRI	CASTG	3 cut(s)	55, 431, 843
Van91I	CCANNNNNTGG	1 cut(s)	939
Vha464I	CTTAAG	1 cut(s)	680
VpaK11BI	GGWCC	4 cut(s)	103, 187, 479, 752
XagI	CCTNNNNNAGG	1 cut(s)	560
XapI	RAATTY	2 cut(s)	22, 94
XceI	RCATGY	1 cut(s)	725
XcmI	CCANNNNNNNNNTGG	1 cut(s)	131
XspI	CTAG	2 cut(s)	281, 540
Zsp2I	ATGCAT	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.