Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007048

Physical Location & Seq

Genomic Coordinates Forward (+)

15823481 .. 15827151

Gene Structure 3671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G181100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAGAGATATTATTTCTATAGCTACAACAAGATACAGCAAGTTACTGTTTAGCAAACCCAACAACCGCCACATCAAAACCATTGTTCCTTCCATTATCAGAAACATCATGTCTGAATCGGATCATCAATCCCCTGCTTTTACCTCCCCAAAAATGGTGGTCAAGAAGATCCTCGCCAAGTCCCAATCTGAGGGCGATGGCGCTACTGTCAGGAGAGCCATTGGAAGCCGTGATTTGAGGAACCTGGATCCATTTCTCATGCTAGATGATTTTTCAGTATCCCCTCCTGCTGGATTTCCTGATCATCCTCACAGAGGTTTTGAGACTGTCACCTACATGCTACAGGGAGGCATCACTCACCAAGACTTTGCAGGGCATAAGGGTACAATCTGGGCTGGAGATGTGCAGTGGATGACAGCAGGCAGAGGAATAGTTCATTCTGAAATGCCTGCTGGAGAAGGACCCAACACAGGCTTGCAGCTCTGGATCAATCTATCCCGCAAAGACAAAATGATTGAGCCAAGATATCAAGAACTCCTATGTAAGGACATAAGGAGGGCAGAGAAAGATGGAGTTGAAGTCAGAGTTATAGCAGGAGAAACAATGGGAGTTAGCTCCCCTGTTTTCACCCGAACCCCGGCATTGTTCTTCGATTTCACCTTAAAACCCAAAGCTCAACTTCATCAAAGCATACCAGAAACCTGGACTTCCTTTGTATACATAATTGAAGGAGAAGGTGTGTTTGGGTCAACGCATGCATCAGCTCATCATGTGCTTGTTTTGGGTCCTGGAGATGGTCTAAGTGTCTGCAACAAGACATCAGAGCCGTTGAGATTTGTGTTGGTGGGAGGGCAACCCATCAATGAGCCAGTGGTTCAGCATGGGCCTTTTGTGATGAACTCACAAGATGAAATTAACCAAACTATTCAGGATTATCATTATGGCCAGAATGGATTTGAAATGGCCAAGTCTTGGAGGTCTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009785 GO:0009892 GO:0009987 GO:0010033 GO:0010466 GO:0010605 GO:0016020 GO:0019222 GO:0023052 GO:0030162 GO:0030234 GO:0030414 GO:0030522 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032870 GO:0033993 GO:0042221 GO:0042742 GO:0043086 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051704 GO:0051707 GO:0051716 GO:0052547 GO:0060255 GO:0061134 GO:0065007 GO:0065009 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0071944 GO:0080090 GO:0097305 GO:0097306 GO:0098542 GO:0098772 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pirin Pirin_C

Protein Analysis

329

Amino Acids

36.48

Weight (kDa)

7.24

Isoelectric Point (pI)

54.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43120 AT2G43120 AT3G59220 AT3G59260
fragaria_vesca	FvH4_4g11770 FvH4_4g11770 FvH4_4g11770 FvH4_4g11770
malus_domestica	MD04G1033300.v1.1
prunus_persica	Prupe.1G181100_v2.0.a1
pyrus_communis	pycom04g02740 pycom04g02780
rosa_chinensis	RchiOBHm_Chr4g0409021
rosa_laevigata	RLG00000008595
rosa_multiflora	Rmu_sc0000121.1_g000003 Rmu_sc0006766.1_g000003 Rmu_sc0017774.1_g000001 Rmu_sc0022473.1_g000002 Rmu_sc0026065.1_g000003
rosa_roxburghii	Rroxscaffold_5G00353500
rosa_rugosa	Rorug04G0089800
rosa_samantha	Rh4AG153500 Rh4BG151600 Rh4CG162000 Rh4DG146900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	972
AccI	GTMKAC	1 cut(s)	717
AciI	CCGC	2 cut(s)	67, 499
AclWI	GGATC	5 cut(s)	129, 163, 242, 255, 494
AcoI	YGGCCR	2 cut(s)	943, 963
AfaI	GTAC	1 cut(s)	385
AfiI	CCNNNNNNNGG	9 cut(s)	154, 190, 290, 314, 470, 544, 637, 794, 972
AgsI	TTSAA	3 cut(s)	578, 728, 959
AjnI	CCWGG	3 cut(s)	243, 701, 787
AjuI	GAANNNNNNNTTGG	2 cut(s)	726, 758
AluBI	AGCT	5 cut(s)	23, 481, 615, 674, 764
AluI	AGCT	5 cut(s)	23, 481, 615, 674, 764
Alw26I	GTCTC	1 cut(s)	317
AlwI	GGATC	5 cut(s)	129, 163, 242, 255, 494
AoxI	GGCC	3 cut(s)	884, 943, 963
ApeKI	GCWGC	1 cut(s)	478
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	3 cut(s)	461, 785, 884
AsuC2I	CCSGG	1 cut(s)	638
AsuHPI	GGTGA	4 cut(s)	322, 350, 619, 649
AvaII	GGWCC	2 cut(s)	461, 785
BalI	TGGCCA	2 cut(s)	945, 965
BamHI	GGATCC	1 cut(s)	247
BbvI	GCAGC	1 cut(s)	490
BccI	CCATC	4 cut(s)	191, 563, 788, 866
BceAI	ACGGC	2 cut(s)	213, 811
BciT130I	CCWGG	3 cut(s)	245, 703, 789
BciVI	GTATCC	1 cut(s)	289
BclI	TGATCA	1 cut(s)	301
BcnI	CCSGG	1 cut(s)	638
BcoDI	GTCTC	1 cut(s)	317
BfaI	CTAG	1 cut(s)	263
BfmI	CTRYAG	2 cut(s)	18, 341
BfoI	RGCGCY	1 cut(s)	204
BfuI	GTATCC	1 cut(s)	289
BisI	GCNGC	1 cut(s)	479
BlsI	GCNGC	1 cut(s)	480
Bme1390I	CCNGG	4 cut(s)	245, 638, 703, 789
Bme18I	GGWCC	2 cut(s)	461, 785
BmgT120I	GGNCC	3 cut(s)	461, 785, 884
BmiI	GGNNCC	4 cut(s)	242, 249, 463, 786
BmrFI	CCNGG	4 cut(s)	245, 638, 703, 789
BmsI	GCATC	2 cut(s)	360, 767
BpmI	CTGGAG	3 cut(s)	417, 474, 810
BpuMI	CCSGG	1 cut(s)	638
BsaJI	CCNNGG	1 cut(s)	636
BsaXI	ACNNNNNCTCC	4 cut(s)	564, 594, 723, 753
Bsc4I	CCNNNNNNNGG	9 cut(s)	154, 190, 290, 314, 470, 544, 637, 794, 972
Bse1I	ACTGG	1 cut(s)	869
BseBI	CCWGG	3 cut(s)	245, 703, 789
BseDI	CCNNGG	1 cut(s)	636
BseGI	GGATG	2 cut(s)	304, 417
BseLI	CCNNNNNNNGG	9 cut(s)	154, 190, 290, 314, 470, 544, 637, 794, 972
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	1 cut(s)	869
BseXI	GCAGC	1 cut(s)	490
BsgI	GTGCAG	1 cut(s)	425
BshFI	GGCC	3 cut(s)	886, 945, 965
BsiSI	CCGG	1 cut(s)	638
BslFI	GGGAC	1 cut(s)	166
BslI	CCNNNNNNNGG	9 cut(s)	154, 190, 290, 314, 470, 544, 637, 794, 972
BsmAI	GTCTC	1 cut(s)	317
BsmFI	GGGAC	1 cut(s)	166
BsnI	GGCC	3 cut(s)	886, 945, 965
Bsp143I	GATC	5 cut(s)	121, 168, 247, 301, 486
BspACI	CCGC	2 cut(s)	67, 499
BspANI	GGCC	3 cut(s)	886, 945, 965
BspCNI	CTCAG	1 cut(s)	181
BspLI	GGNNCC	4 cut(s)	242, 249, 463, 786
BspPI	GGATC	5 cut(s)	129, 163, 242, 255, 494
BsrI	ACTGG	1 cut(s)	869
BssECI	CCNNGG	1 cut(s)	636
BssMI	GATC	5 cut(s)	121, 168, 247, 301, 486
BssNAI	GTATAC	1 cut(s)	718
Bst1107I	GTATAC	1 cut(s)	718
Bst2UI	CCWGG	3 cut(s)	245, 703, 789
Bst4CI	ACNGT	3 cut(s)	48, 208, 328
BstC8I	GCNNGC	4 cut(s)	421, 450, 476, 756
BstDEI	CTNAG	2 cut(s)	189, 800
BstENI	CCTNNNNNAGG	2 cut(s)	312, 542
BstF5I	GGATG	2 cut(s)	304, 417
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	5 cut(s)	124, 171, 250, 304, 489
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	5 cut(s)	121, 168, 247, 301, 486
BstNI	CCWGG	3 cut(s)	245, 703, 789
BstNSI	RCATGY	2 cut(s)	340, 758
BstSCI	CCNGG	4 cut(s)	243, 636, 701, 787
BstSFI	CTRYAG	2 cut(s)	18, 341
BstV1I	GCAGC	1 cut(s)	490
BstX2I	RGATCY	2 cut(s)	168, 247
BstXI	CCANNNNNNTGG	1 cut(s)	702
BstYI	RGATCY	2 cut(s)	168, 247
BstZ17I	GTATAC	1 cut(s)	718
BsuI	GTATCC	1 cut(s)	289
BsuRI	GGCC	3 cut(s)	886, 945, 965
BtgZI	GCGATG	1 cut(s)	210
BtsCI	GGATG	2 cut(s)	304, 417
BtsI	GCAGTG	1 cut(s)	413
BtsIMutI	CAGTG	2 cut(s)	413, 876
Cac8I	GCNNGC	4 cut(s)	421, 450, 476, 756
CfoI	GCGC	1 cut(s)	203
Cfr13I	GGNCC	3 cut(s)	461, 785, 884
Csp6I	GTAC	1 cut(s)	384
CspCI	CAANNNNNGTGG	2 cut(s)	138, 173
CviAII	CATG	6 cut(s)	109, 259, 337, 755, 770, 881
CviQI	GTAC	1 cut(s)	384
DdeI	CTNAG	2 cut(s)	189, 800
DpnI	GATC	5 cut(s)	123, 170, 249, 303, 488
DpnII	GATC	5 cut(s)	121, 168, 247, 301, 486
EaeI	YGGCCR	2 cut(s)	943, 963
Eco32I	GATATC	1 cut(s)	527
Eco47I	GGWCC	2 cut(s)	461, 785
EcoNI	CCTNNNNNAGG	2 cut(s)	312, 542
EcoO109I	RGGNCCY	2 cut(s)	461, 785
EcoRII	CCWGG	3 cut(s)	243, 701, 787
EcoRV	GATATC	1 cut(s)	527
EcoT22I	ATGCAT	1 cut(s)	760
FaeI	CATG	6 cut(s)	112, 262, 340, 758, 773, 884
FalI	AAGNNNNNCTT	2 cut(s)	663, 695
FaqI	GGGAC	1 cut(s)	166
FatI	CATG	6 cut(s)	108, 258, 336, 754, 769, 880
FauI	CCCGC	1 cut(s)	506
FbaI	TGATCA	1 cut(s)	301
FblI	GTMKAC	1 cut(s)	717
Fnu4HI	GCNGC	1 cut(s)	479
FokI	GGATG	2 cut(s)	291, 424
Fsp4HI	GCNGC	1 cut(s)	479
FspBI	CTAG	1 cut(s)	263
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	1 cut(s)	479
GsuI	CTGGAG	3 cut(s)	417, 474, 810
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	3 cut(s)	886, 945, 965
HapII	CCGG	1 cut(s)	638
HhaI	GCGC	1 cut(s)	203
Hin1II	CATG	6 cut(s)	112, 262, 340, 758, 773, 884
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HincII	GTYRAC	1 cut(s)	750
HindII	GTYRAC	1 cut(s)	750
HinfI	GANTC	1 cut(s)	116
HpaII	CCGG	1 cut(s)	638
HphI	GGTGA	4 cut(s)	322, 350, 619, 649
Hpy166II	GTNNAC	2 cut(s)	718, 750
Hpy188I	TCNGA	7 cut(s)	101, 115, 121, 190, 442, 584, 823
Hpy188III	TCNNGA	6 cut(s)	163, 211, 299, 484, 530, 929
Hpy8I	GTNNAC	2 cut(s)	718, 750
HpyAV	CCTTC	4 cut(s)	99, 452, 722, 728
HpyCH4III	ACNGT	3 cut(s)	48, 208, 328
HpyCH4V	TGCA	5 cut(s)	371, 406, 478, 758, 810
HpyF3I	CTNAG	2 cut(s)	189, 800
Hsp92II	CATG	6 cut(s)	112, 262, 340, 758, 773, 884
HspAI	GCGC	1 cut(s)	201
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	5 cut(s)	121, 168, 247, 301, 486
LmnI	GCTCC	1 cut(s)	620
Lsp1109I	GCAGC	1 cut(s)	490
LweI	GCATC	2 cut(s)	360, 767
MaeI	CTAG	1 cut(s)	263
MaeIII	GTNAC	2 cut(s)	42, 328
MalI	GATC	5 cut(s)	123, 170, 249, 303, 488
MboI	GATC	5 cut(s)	121, 168, 247, 301, 486
MboII	GAAGA	2 cut(s)	178, 640
MflI	RGATCY	2 cut(s)	168, 247
MlsI	TGGCCA	2 cut(s)	945, 965
MluCI	AATT	2 cut(s)	723, 912
MluNI	TGGCCA	2 cut(s)	945, 965
Mox20I	TGGCCA	2 cut(s)	945, 965
Mph1103I	ATGCAT	1 cut(s)	760
MscI	TGGCCA	2 cut(s)	945, 965
MseI	TTAA	2 cut(s)	662, 915
MslI	CAYNNNNRTG	1 cut(s)	335
Msp20I	TGGCCA	2 cut(s)	945, 965
MspI	CCGG	1 cut(s)	638
MspR9I	CCNGG	4 cut(s)	245, 638, 703, 789
MvaI	CCWGG	3 cut(s)	245, 703, 789
NciI	CCSGG	1 cut(s)	638
NdeII	GATC	5 cut(s)	121, 168, 247, 301, 486
NlaIII	CATG	6 cut(s)	112, 262, 340, 758, 773, 884
NlaIV	GGNNCC	4 cut(s)	242, 249, 463, 786
NmuCI	GTSAC	1 cut(s)	328
NsiI	ATGCAT	1 cut(s)	760
NspI	RCATGY	2 cut(s)	340, 758
PaeI	GCATGC	1 cut(s)	758
PfeI	GAWTC	1 cut(s)	116
PflMI	CCANNNNNTGG	1 cut(s)	972
PfoI	TCCNGGA	1 cut(s)	787
PkrI	GCNGC	1 cut(s)	480
PpuMI	RGGWCCY	2 cut(s)	461, 785
Psp5II	RGGWCCY	2 cut(s)	461, 785
Psp6I	CCWGG	3 cut(s)	243, 701, 787
PspGI	CCWGG	3 cut(s)	243, 701, 787
PspN4I	GGNNCC	4 cut(s)	242, 249, 463, 786
PspPI	GGNCC	3 cut(s)	461, 785, 884
PspPPI	RGGWCCY	2 cut(s)	461, 785
PsuI	RGATCY	2 cut(s)	168, 247
RsaI	GTAC	1 cut(s)	385
RsaNI	GTAC	1 cut(s)	384
RseI	CAYNNNNRTG	1 cut(s)	335
SaqAI	TTAA	2 cut(s)	662, 915
SatI	GCNGC	1 cut(s)	479
Sau3AI	GATC	5 cut(s)	121, 168, 247, 301, 486
Sau96I	GGNCC	3 cut(s)	461, 785, 884
ScrFI	CCNGG	4 cut(s)	245, 638, 703, 789
SfaNI	GCATC	2 cut(s)	360, 767
SfcI	CTRYAG	2 cut(s)	18, 341
SinI	GGWCC	2 cut(s)	461, 785
SmiMI	CAYNNNNRTG	1 cut(s)	335
SphI	GCATGC	1 cut(s)	758
Sse9I	AATT	2 cut(s)	723, 912
SsiI	CCGC	2 cut(s)	67, 499
SspMI	CTAG	1 cut(s)	263
StyD4I	CCNGG	4 cut(s)	243, 636, 701, 787
TaaI	ACNGT	3 cut(s)	48, 208, 328
TaqI	TCGA	1 cut(s)	651
TasI	AATT	2 cut(s)	723, 912
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	2 cut(s)	662, 915
Tru9I	TTAA	2 cut(s)	662, 915
TscAI	CASTG	2 cut(s)	413, 876
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	1 cut(s)	478
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	4 cut(s)	425, 671, 911, 924
TspRI	CASTG	2 cut(s)	413, 876
Van91I	CCANNNNNTGG	1 cut(s)	972
VpaK11BI	GGWCC	2 cut(s)	461, 785
XagI	CCTNNNNNAGG	2 cut(s)	312, 542
XceI	RCATGY	2 cut(s)	340, 758
XmiI	GTMKAC	1 cut(s)	717
XspI	CTAG	1 cut(s)	263
Zsp2I	ATGCAT	1 cut(s)	760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.