Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007048

Physical Location & Seq

Genomic Coordinates Forward (+)

21893812 .. 21895789

Gene Structure 1978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G59220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGACGTATGAGAACAATAGTGTACCAAGAATTGTAATCAAGAAAGTTCTAGCAAAGCTTGAGAAGGAAGGTGAAGGAGCTGTCGTTAGAAATGGCATCACAAAGATTGACCAGAAGTTATTGGACCCGTTCGTGTTGCTAGTTGAATTTTCCTTTTCACTCTCAGCTGGATTCCCAGATCATCCTCACAGAGGTTTTGAAAGTGTTACATACATGCTACAGGGAGGTATCATTCACAAAGATCCTAAAGGTCATAAAGGTACAATTCAAGCCGGAGATGTTCAGTGGATGACAGCAGGAAGAGGAATCATTCATTCCGAATTTCCGGAAGAAGAAGTAAACAATGGTTTACAGCTTTGGATCAATCTCCCTTCCACTGAAAAAATGACTGAACCAAAATATAAGGAACTATCGAGTTTAGACATTCCTCGAGCAGAAGAAAACGGAGTTGAGGTCAAAGTCATAGCCGGAGATTCAATGGGAATCAAATCTCCAGTCTACACAAGAACACCAACAATGTTCCTTGACTTTACCCTCAAGCCAGGATCTCAAACCCACCAAACCGTTCCAGAATCATGGACCGCTTTCGCTTACATTATAGAAGGCGATGAAGGTGTTTTCGGTTCCTTGAACTCTTCCGCAATATCGGCCCACCATGTTGTTGTGTTTGGGCCAGGGGATTTAGTTAGCGTGTGGAACAAGTCAACTTCGAGGTCATTGAGGTTTTTGTTGATTGCAGGGGAACCTATCGGCGAGCCTGTGGTTCAGTGTGGTCCCTTTGTGATGAATTCACAGGCGGAGATCGATATGGCTTTTGATGACTATCAGAATGCTAAGAACGGGTTTGAAATGGCCAAGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009785 GO:0009892 GO:0009987 GO:0010033 GO:0010466 GO:0010605 GO:0016020 GO:0019222 GO:0023052 GO:0030162 GO:0030234 GO:0030414 GO:0030522 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032870 GO:0033993 GO:0042221 GO:0042742 GO:0043086 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051704 GO:0051707 GO:0051716 GO:0052547 GO:0060255 GO:0061134 GO:0065007 GO:0065009 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0071944 GO:0080090 GO:0097305 GO:0097306 GO:0098542 GO:0098772 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pirin Pirin_C

Protein Analysis

287

Amino Acids

31.6

Weight (kDa)

5.32

Isoelectric Point (pI)

36.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pirin	PF02678	40 - 121	3e-27	Pirin
Pirin_C	PF05726	175 - 281	5.3e-33	Pirin C-terminal cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43120 AT2G43120 AT3G59220 AT3G59260
fragaria_vesca	FvH4_4g11770 FvH4_4g11770 FvH4_4g11770 FvH4_4g11770
malus_domestica	MD04G1033300.v1.1
prunus_persica	Prupe.1G181100_v2.0.a1
pyrus_communis	pycom04g02740 pycom04g02780
rosa_chinensis	RchiOBHm_Chr4g0409021
rosa_laevigata	RLG00000008595
rosa_multiflora	Rmu_sc0000121.1_g000003 Rmu_sc0006766.1_g000003 Rmu_sc0017774.1_g000001 Rmu_sc0022473.1_g000002 Rmu_sc0026065.1_g000003
rosa_roxburghii	Rroxscaffold_5G00353500
rosa_rugosa	Rorug04G0089800
rosa_samantha	Rh4AG153500 Rh4BG151600 Rh4CG162000 Rh4DG146900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	498
AccIII	TCCGGA	1 cut(s)	325
AciI	CCGC	3 cut(s)	582, 639, 797
AclWI	GGATC	3 cut(s)	236, 368, 553
AcoI	YGGCCR	1 cut(s)	852
AcsI	RAATTY	3 cut(s)	146, 320, 787
AfaI	GTAC	2 cut(s)	24, 262
AfiI	CCNNNNNNNGG	1 cut(s)	191
AgsI	TTSAA	6 cut(s)	146, 200, 269, 477, 631, 848
AjnI	CCWGG	2 cut(s)	541, 673
AluBI	AGCT	4 cut(s)	58, 80, 167, 355
AluI	AGCT	4 cut(s)	58, 80, 167, 355
AlwI	GGATC	3 cut(s)	236, 368, 553
Ama87I	CYCGRG	1 cut(s)	429
Aor13HI	TCCGGA	1 cut(s)	325
AoxI	GGCC	3 cut(s)	648, 671, 852
ApoI	RAATTY	3 cut(s)	146, 320, 787
ArsI	GACNNNNNNTTYG	2 cut(s)	480, 512
AspS9I	GGNCC	5 cut(s)	124, 579, 649, 671, 773
AsuHPI	GGTGA	1 cut(s)	83
AvaI	CYCGRG	1 cut(s)	429
AvaII	GGWCC	3 cut(s)	124, 579, 773
BalI	TGGCCA	1 cut(s)	854
BciT130I	CCWGG	2 cut(s)	543, 675
BfaI	CTAG	2 cut(s)	50, 140
BfmI	CTRYAG	1 cut(s)	218
Bme1390I	CCNGG	2 cut(s)	543, 675
Bme18I	GGWCC	3 cut(s)	124, 579, 773
BmeT110I	CYCGRG	1 cut(s)	429
BmgT120I	GGNCC	5 cut(s)	124, 579, 649, 671, 773
BmiI	GGNNCC	4 cut(s)	126, 625, 744, 775
BmrFI	CCNGG	2 cut(s)	543, 675
BmsI	GCATC	1 cut(s)	105
BpmI	CTGGAG	1 cut(s)	477
BpuEI	CTTGAG	2 cut(s)	80, 521
Bsa29I	ATCGAT	1 cut(s)	804
BsaBI	GATNNNNATC	1 cut(s)	822
BsaJI	CCNNGG	1 cut(s)	674
BsaWI	WCCGGW	1 cut(s)	325
BsaXI	ACNNNNNCTCC	4 cut(s)	69, 99, 438, 468
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse1I	ACTGG	1 cut(s)	494
Bse8I	GATNNNNATC	1 cut(s)	822
BseAI	TCCGGA	1 cut(s)	325
BseBI	CCWGG	2 cut(s)	543, 675
BseCI	ATCGAT	1 cut(s)	804
BseDI	CCNNGG	1 cut(s)	674
BseGI	GGATG	2 cut(s)	181, 294
BseJI	GATNNNNATC	1 cut(s)	822
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseMII	CTCAG	1 cut(s)	177
BseNI	ACTGG	1 cut(s)	494
BshFI	GGCC	3 cut(s)	650, 673, 854
BshVI	ATCGAT	1 cut(s)	804
BsiHKCI	CYCGRG	1 cut(s)	429
BsiSI	CCGG	3 cut(s)	273, 326, 468
BslFI	GGGAC	1 cut(s)	759
BslI	CCNNNNNNNGG	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	759
BsmI	GAATGC	1 cut(s)	835
BsnI	GGCC	3 cut(s)	650, 673, 854
BsoBI	CYCGRG	1 cut(s)	429
Bsp13I	TCCGGA	1 cut(s)	325
Bsp143I	GATC	5 cut(s)	178, 241, 360, 545, 801
BspACI	CCGC	3 cut(s)	582, 639, 797
BspANI	GGCC	3 cut(s)	650, 673, 854
BspCNI	CTCAG	1 cut(s)	176
BspDI	ATCGAT	1 cut(s)	804
BspEI	TCCGGA	1 cut(s)	325
BspLI	GGNNCC	4 cut(s)	126, 625, 744, 775
BspPI	GGATC	3 cut(s)	236, 368, 553
BsrI	ACTGG	1 cut(s)	494
BssECI	CCNNGG	1 cut(s)	674
BssMI	GATC	5 cut(s)	178, 241, 360, 545, 801
Bst2UI	CCWGG	2 cut(s)	543, 675
Bst4CI	ACNGT	1 cut(s)	565
Bst6I	CTCTTC	2 cut(s)	295, 640
BstC8I	GCNNGC	1 cut(s)	755
BstDEI	CTNAG	2 cut(s)	163, 834
BstENI	CCTNNNNNAGG	1 cut(s)	189
BstF5I	GGATG	2 cut(s)	181, 294
BstKTI	GATC	5 cut(s)	181, 244, 363, 548, 804
BstMBI	GATC	5 cut(s)	178, 241, 360, 545, 801
BstMWI	GCNNNNNNNGC	1 cut(s)	647
BstNI	CCWGG	2 cut(s)	543, 675
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	2 cut(s)	541, 673
BstSFI	CTRYAG	1 cut(s)	218
BstX2I	RGATCY	2 cut(s)	241, 545
BstXI	CCANNNNNNTGG	1 cut(s)	576
BstYI	RGATCY	2 cut(s)	241, 545
Bsu15I	ATCGAT	1 cut(s)	804
BsuRI	GGCC	3 cut(s)	650, 673, 854
BsuTUI	ATCGAT	1 cut(s)	804
BtgZI	GCGATG	1 cut(s)	621
BtsCI	GGATG	2 cut(s)	181, 294
BtsIMutI	CAGTG	3 cut(s)	290, 375, 773
Cac8I	GCNNGC	1 cut(s)	755
Cfr13I	GGNCC	5 cut(s)	124, 579, 649, 671, 773
ClaI	ATCGAT	1 cut(s)	804
Csp6I	GTAC	2 cut(s)	23, 261
CviAII	CATG	3 cut(s)	214, 576, 656
CviQI	GTAC	2 cut(s)	23, 261
DdeI	CTNAG	2 cut(s)	163, 834
DpnI	GATC	5 cut(s)	180, 243, 362, 547, 803
DpnII	GATC	5 cut(s)	178, 241, 360, 545, 801
EaeI	YGGCCR	1 cut(s)	852
Eam1104I	CTCTTC	2 cut(s)	295, 640
EarI	CTCTTC	2 cut(s)	295, 640
EciI	GGCGGA	1 cut(s)	812
Eco47I	GGWCC	3 cut(s)	124, 579, 773
Eco88I	CYCGRG	1 cut(s)	429
EcoNI	CCTNNNNNAGG	1 cut(s)	189
EcoRI	GAATTC	1 cut(s)	787
EcoRII	CCWGG	2 cut(s)	541, 673
FaeI	CATG	3 cut(s)	217, 579, 659
FaqI	GGGAC	1 cut(s)	759
FatI	CATG	3 cut(s)	213, 575, 655
FblI	GTMKAC	1 cut(s)	498
FokI	GGATG	2 cut(s)	168, 301
FspBI	CTAG	2 cut(s)	50, 140
GsuI	CTGGAG	1 cut(s)	477
HaeIII	GGCC	3 cut(s)	650, 673, 854
HapII	CCGG	3 cut(s)	273, 326, 468
Hin1II	CATG	3 cut(s)	217, 579, 659
HincII	GTYRAC	1 cut(s)	705
HindII	GTYRAC	1 cut(s)	705
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	5 cut(s)	171, 306, 473, 483, 572
HpaII	CCGG	3 cut(s)	273, 326, 468
HphI	GGTGA	1 cut(s)	83
Hpy166II	GTNNAC	5 cut(s)	23, 340, 350, 499, 705
Hpy188I	TCNGA	2 cut(s)	319, 828
Hpy188III	TCNNGA	3 cut(s)	40, 326, 569
Hpy8I	GTNNAC	5 cut(s)	23, 340, 350, 499, 705
HpyAV	CCTTC	6 cut(s)	58, 62, 68, 381, 596, 605
HpyCH4III	ACNGT	1 cut(s)	565
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	1 cut(s)	737
HpyF10VI	GCNNNNNNNGC	1 cut(s)	647
HpyF3I	CTNAG	2 cut(s)	163, 834
HpySE526I	ACGT	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	217, 579, 659
Kpn2I	TCCGGA	1 cut(s)	325
Kzo9I	GATC	5 cut(s)	178, 241, 360, 545, 801
LmnI	GCTCC	1 cut(s)	77
LweI	GCATC	1 cut(s)	105
MaeI	CTAG	2 cut(s)	50, 140
MaeII	ACGT	1 cut(s)	5
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	5 cut(s)	180, 243, 362, 547, 803
MboI	GATC	5 cut(s)	178, 241, 360, 545, 801
MboII	GAAGA	5 cut(s)	312, 341, 344, 449, 627
MflI	RGATCY	2 cut(s)	241, 545
MlsI	TGGCCA	1 cut(s)	854
MluCI	AATT	5 cut(s)	30, 146, 264, 320, 787
MluNI	TGGCCA	1 cut(s)	854
MnlI	CCTC	9 cut(s)	185, 195, 218, 296, 438, 445, 545, 705, 714
Mox20I	TGGCCA	1 cut(s)	854
MroI	TCCGGA	1 cut(s)	325
MscI	TGGCCA	1 cut(s)	854
Msp20I	TGGCCA	1 cut(s)	854
MspA1I	CMGCKG	1 cut(s)	167
MspI	CCGG	3 cut(s)	273, 326, 468
MspR9I	CCNGG	2 cut(s)	543, 675
Mva1269I	GAATGC	1 cut(s)	835
MvaI	CCWGG	2 cut(s)	543, 675
MwoI	GCNNNNNNNGC	1 cut(s)	647
NdeII	GATC	5 cut(s)	178, 241, 360, 545, 801
NlaIII	CATG	3 cut(s)	217, 579, 659
NlaIV	GGNNCC	4 cut(s)	126, 625, 744, 775
NspI	RCATGY	1 cut(s)	217
PaeR7I	CTCGAG	1 cut(s)	429
PctI	GAATGC	1 cut(s)	835
PfeI	GAWTC	5 cut(s)	171, 306, 473, 483, 572
Psp6I	CCWGG	2 cut(s)	541, 673
PspGI	CCWGG	2 cut(s)	541, 673
PspN4I	GGNNCC	4 cut(s)	126, 625, 744, 775
PspPI	GGNCC	5 cut(s)	124, 579, 649, 671, 773
PspXI	VCTCGAGB	1 cut(s)	429
PsuI	RGATCY	2 cut(s)	241, 545
PvuII	CAGCTG	1 cut(s)	167
RsaI	GTAC	2 cut(s)	24, 262
RsaNI	GTAC	2 cut(s)	23, 261
Sau3AI	GATC	5 cut(s)	178, 241, 360, 545, 801
Sau96I	GGNCC	5 cut(s)	124, 579, 649, 671, 773
ScrFI	CCNGG	2 cut(s)	543, 675
SfaNI	GCATC	1 cut(s)	105
SfcI	CTRYAG	1 cut(s)	218
Sfr274I	CTCGAG	1 cut(s)	429
SinI	GGWCC	3 cut(s)	124, 579, 773
SlaI	CTCGAG	1 cut(s)	429
SmlI	CTYRAG	3 cut(s)	59, 429, 536
SmoI	CTYRAG	3 cut(s)	59, 429, 536
Sse9I	AATT	5 cut(s)	30, 146, 264, 320, 787
SsiI	CCGC	3 cut(s)	582, 639, 797
SspMI	CTAG	2 cut(s)	50, 140
StyD4I	CCNGG	2 cut(s)	541, 673
TaaI	ACNGT	1 cut(s)	565
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	4 cut(s)	413, 430, 710, 804
TasI	AATT	5 cut(s)	30, 146, 264, 320, 787
TfiI	GAWTC	5 cut(s)	171, 306, 473, 483, 572
TscAI	CASTG	3 cut(s)	290, 382, 773
TspDTI	ATGAA	3 cut(s)	302, 624, 800
TspGWI	ACGGA	1 cut(s)	459
TspRI	CASTG	3 cut(s)	290, 382, 773
VpaK11BI	GGWCC	3 cut(s)	124, 579, 773
XagI	CCTNNNNNAGG	1 cut(s)	189
XapI	RAATTY	3 cut(s)	146, 320, 787
XceI	RCATGY	1 cut(s)	217
XhoI	CTCGAG	1 cut(s)	429
XmiI	GTMKAC	1 cut(s)	498
XspI	CTAG	2 cut(s)	50, 140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.