Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0007048

Physical Location & Seq

Genomic Coordinates Reverse (-)

27137853 .. 27141228

Gene Structure 3376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG151600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGCTAGATGACTTTACAGTGTCCCCTCCTGCTGGATTTCCAGATCATCCACATAGAGGATTCGAAACTGTAACATATGTGCTACAGGGAGGCATCACTCACCAAGACTTTGCAGGGCACAAGGGTACAATTGGAGCTGGAGATGTGCAGTGGATGACAGCAGGCAGGGGAATAGTTCACTCTGAGATGCCTGCAGGAGCAGGACGCAACAATGGTTTGCAGCTTTGGATCAATTTAGCCCGCAAAGACAAAATGGTTGAGCCTAGATACCAAGAACTCCTAAGCAAGGAGATAAAGCGGGCAGAGAAAGATGGAGTTGAAGTTCGAGTGATAGCAGGAGAAACAATGGGAGTGAGCTCTCCTGTTTATACCCGAACGCCAACATTTTTCTTTGACTTCACCCTTAAGCCTAAAGCTATTTTGCATCAAAGCATACCAGAAAGTTGGACCTCCTTTGTTTACATTATTGAAGGAGAAGGATTTTTTGGGTCAGCGCATGCATCAGCTCATCATATTCTGGTTCTGGGTCCTGGAGATGGCGTAAGCGTATGCAACAAGTCATCGGAGCCGCTGAGGTTTGTGTTGATCGGAGGGCAGCCAATAAATGAACCAGTGGTTCAGCATGGGCCTTTTGTGATGAACACACAAGCTGAAATCGAACAAACTATTAAGGACTATCATTATGGCCAGAATGGGTTTGAAAGTGCCAAGTCTTGGCGGTCTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009785 GO:0009892 GO:0009987 GO:0010033 GO:0010466 GO:0010605 GO:0016020 GO:0019222 GO:0023052 GO:0030162 GO:0030234 GO:0030414 GO:0030522 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032870 GO:0033993 GO:0042221 GO:0042742 GO:0043086 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051704 GO:0051707 GO:0051716 GO:0052547 GO:0060255 GO:0061134 GO:0065007 GO:0065009 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0071944 GO:0080090 GO:0097305 GO:0097306 GO:0098542 GO:0098772 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pirin Pirin_C

Protein Analysis

242

Amino Acids

26.65

Weight (kDa)

6.11

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pirin	PF02678	10 - 77	6.6e-29	Pirin
Pirin_C	PF05726	131 - 232	4.4e-32	Pirin C-terminal cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43120 AT2G43120 AT3G59220 AT3G59260
fragaria_vesca	FvH4_4g11770 FvH4_4g11770 FvH4_4g11770 FvH4_4g11770
malus_domestica	MD04G1033300.v1.1
prunus_persica	Prupe.1G181100_v2.0.a1
pyrus_communis	pycom04g02740 pycom04g02780
rosa_chinensis	RchiOBHm_Chr4g0409021
rosa_laevigata	RLG00000008595
rosa_multiflora	Rmu_sc0000121.1_g000003 Rmu_sc0006766.1_g000003 Rmu_sc0017774.1_g000001 Rmu_sc0022473.1_g000002 Rmu_sc0026065.1_g000003
rosa_roxburghii	Rroxscaffold_5G00353500
rosa_rugosa	Rorug04G0089800
rosa_samantha	Rh4AG153500 Rh4BG151600 Rh4CG162000 Rh4DG146900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	714
AciI	CCGC	4 cut(s)	241, 298, 569, 718
AclWI	GGATC	1 cut(s)	236
AcoI	YGGCCR	1 cut(s)	685
AfaI	GTAC	1 cut(s)	127
AfiI	CCNNNNNNNGG	5 cut(s)	32, 56, 286, 536, 714
AflII	CTTAAG	1 cut(s)	404
AgsI	TTSAA	3 cut(s)	320, 470, 701
AjnI	CCWGG	1 cut(s)	529
AjuI	GAANNNNNNNTTGG	2 cut(s)	468, 500
AloI	GAACNNNNNNTCC	2 cut(s)	306, 338
AluBI	AGCT	6 cut(s)	137, 223, 357, 416, 506, 650
AluI	AGCT	6 cut(s)	137, 223, 357, 416, 506, 650
Alw21I	GWGCWC	1 cut(s)	359
AlwI	GGATC	1 cut(s)	236
AoxI	GGCC	2 cut(s)	626, 685
ApeKI	GCWGC	2 cut(s)	220, 595
AspLEI	GCGC	1 cut(s)	496
AspS9I	GGNCC	3 cut(s)	447, 527, 626
AsuHPI	GGTGA	2 cut(s)	92, 391
AsuII	TTCGAA	1 cut(s)	63
AvaII	GGWCC	2 cut(s)	447, 527
BaeGI	GKGCMC	1 cut(s)	120
BalI	TGGCCA	1 cut(s)	687
BanII	GRGCYC	1 cut(s)	359
Bbv12I	GWGCWC	1 cut(s)	359
BbvCI	CCTCAGC	1 cut(s)	572
BbvI	GCAGC	2 cut(s)	232, 607
BccI	CCATC	2 cut(s)	305, 530
BciT130I	CCWGG	1 cut(s)	531
BfaI	CTAG	2 cut(s)	5, 264
BfmI	CTRYAG	2 cut(s)	83, 192
BfrI	CTTAAG	1 cut(s)	404
BisI	GCNGC	3 cut(s)	221, 569, 596
BlsI	GCNGC	3 cut(s)	222, 570, 597
Bme1390I	CCNGG	1 cut(s)	531
Bme18I	GGWCC	2 cut(s)	447, 527
BmgT120I	GGNCC	3 cut(s)	447, 527, 626
BmiI	GGNNCC	2 cut(s)	528, 567
BmrFI	CCNGG	1 cut(s)	531
BmsI	GCATC	4 cut(s)	102, 177, 433, 509
BpmI	CTGGAG	2 cut(s)	159, 552
Bpu10I	CCTNAGC	2 cut(s)	281, 572
Bpu14I	TTCGAA	1 cut(s)	63
BsaXI	ACNNNNNCTCC	4 cut(s)	306, 336, 525, 555
Bsc4I	CCNNNNNNNGG	5 cut(s)	32, 56, 286, 536, 714
Bse1I	ACTGG	1 cut(s)	611
BseBI	CCWGG	1 cut(s)	531
BseGI	GGATG	2 cut(s)	46, 159
BseLI	CCNNNNNNNGG	5 cut(s)	32, 56, 286, 536, 714
BseMII	CTCAG	2 cut(s)	174, 563
BseNI	ACTGG	1 cut(s)	611
BseSI	GKGCMC	1 cut(s)	120
BseXI	GCAGC	2 cut(s)	232, 607
BsgI	GTGCAG	1 cut(s)	167
BshFI	GGCC	2 cut(s)	628, 687
BsiHKAI	GWGCWC	1 cut(s)	359
BslFI	GGGAC	1 cut(s)	7
BslI	CCNNNNNNNGG	5 cut(s)	32, 56, 286, 536, 714
BsmFI	GGGAC	1 cut(s)	7
BsnI	GGCC	2 cut(s)	628, 687
Bsp119I	TTCGAA	1 cut(s)	63
Bsp1286I	GDGCHC	2 cut(s)	120, 359
Bsp143I	GATC	3 cut(s)	43, 228, 585
BspACI	CCGC	4 cut(s)	241, 298, 569, 718
BspANI	GGCC	2 cut(s)	628, 687
BspCNI	CTCAG	2 cut(s)	175, 564
BspLI	GGNNCC	2 cut(s)	528, 567
BspMAI	CTGCAG	1 cut(s)	196
BspPI	GGATC	1 cut(s)	236
BspT104I	TTCGAA	1 cut(s)	63
BspTI	CTTAAG	1 cut(s)	404
BsrI	ACTGG	1 cut(s)	611
BssMI	GATC	3 cut(s)	43, 228, 585
Bst2UI	CCWGG	1 cut(s)	531
Bst4CI	ACNGT	2 cut(s)	19, 70
BstAFI	CTTAAG	1 cut(s)	404
BstBI	TTCGAA	1 cut(s)	63
BstC8I	GCNNGC	5 cut(s)	163, 192, 241, 300, 498
BstDEI	CTNAG	3 cut(s)	183, 281, 572
BstENI	CCTNNNNNAGG	1 cut(s)	284
BstF5I	GGATG	2 cut(s)	46, 159
BstHHI	GCGC	1 cut(s)	496
BstKTI	GATC	3 cut(s)	46, 231, 588
BstMBI	GATC	3 cut(s)	43, 228, 585
BstNI	CCWGG	1 cut(s)	531
BstNSI	RCATGY	1 cut(s)	500
BstSCI	CCNGG	1 cut(s)	529
BstSFI	CTRYAG	2 cut(s)	83, 192
BstSLI	GKGCMC	1 cut(s)	120
BstV1I	GCAGC	2 cut(s)	232, 607
BstXI	CCANNNNNNTGG	1 cut(s)	444
BsuRI	GGCC	2 cut(s)	628, 687
BtsCI	GGATG	2 cut(s)	46, 159
BtsI	GCAGTG	1 cut(s)	155
BtsIMutI	CAGTG	3 cut(s)	24, 155, 618
Cac8I	GCNNGC	5 cut(s)	163, 192, 241, 300, 498
CfoI	GCGC	1 cut(s)	496
Cfr13I	GGNCC	3 cut(s)	447, 527, 626
CseI	GACGC	1 cut(s)	213
Csp6I	GTAC	1 cut(s)	126
CviAII	CATG	2 cut(s)	497, 623
CviQI	GTAC	1 cut(s)	126
DdeI	CTNAG	3 cut(s)	183, 281, 572
DpnI	GATC	3 cut(s)	45, 230, 587
DpnII	GATC	3 cut(s)	43, 228, 585
EaeI	YGGCCR	1 cut(s)	685
Ecl136II	GAGCTC	1 cut(s)	357
Eco24I	GRGCYC	1 cut(s)	359
Eco47I	GGWCC	2 cut(s)	447, 527
Eco53kI	GAGCTC	1 cut(s)	357
EcoICRI	GAGCTC	1 cut(s)	357
EcoNI	CCTNNNNNAGG	1 cut(s)	284
EcoO109I	RGGNCCY	1 cut(s)	527
EcoRII	CCWGG	1 cut(s)	529
EcoT22I	ATGCAT	1 cut(s)	502
EcoT38I	GRGCYC	1 cut(s)	359
FaeI	CATG	2 cut(s)	500, 626
FaqI	GGGAC	1 cut(s)	7
FatI	CATG	2 cut(s)	496, 622
FauI	CCCGC	2 cut(s)	248, 291
FauNDI	CATATG	1 cut(s)	76
Fnu4HI	GCNGC	3 cut(s)	221, 569, 596
FokI	GGATG	2 cut(s)	33, 166
FriOI	GRGCYC	1 cut(s)	359
Fsp4HI	GCNGC	3 cut(s)	221, 569, 596
FspBI	CTAG	2 cut(s)	5, 264
GlaI	GCGC	1 cut(s)	495
GluI	GCNGC	3 cut(s)	221, 569, 596
GsuI	CTGGAG	2 cut(s)	159, 552
HaeIII	GGCC	2 cut(s)	628, 687
HgaI	GACGC	1 cut(s)	213
HhaI	GCGC	1 cut(s)	496
Hin1II	CATG	2 cut(s)	500, 626
Hin6I	GCGC	1 cut(s)	494
HinP1I	GCGC	1 cut(s)	494
HinfI	GANTC	1 cut(s)	60
HphI	GGTGA	2 cut(s)	92, 391
Hpy166II	GTNNAC	2 cut(s)	178, 460
Hpy188I	TCNGA	3 cut(s)	184, 565, 590
Hpy188III	TCNNGA	1 cut(s)	41
Hpy8I	GTNNAC	2 cut(s)	178, 460
HpyAV	CCTTC	2 cut(s)	464, 470
HpyCH4III	ACNGT	2 cut(s)	19, 70
HpyCH4V	TGCA	7 cut(s)	113, 148, 194, 220, 424, 500, 552
HpyF3I	CTNAG	3 cut(s)	183, 281, 572
Hsp92II	CATG	2 cut(s)	500, 626
HspAI	GCGC	1 cut(s)	494
Kzo9I	GATC	3 cut(s)	43, 228, 585
LmnI	GCTCC	3 cut(s)	134, 197, 565
Lsp1109I	GCAGC	2 cut(s)	232, 607
LweI	GCATC	4 cut(s)	102, 177, 433, 509
MaeI	CTAG	2 cut(s)	5, 264
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	3 cut(s)	45, 230, 587
MboI	GATC	3 cut(s)	43, 228, 585
MfeI	CAATTG	1 cut(s)	129
MhlI	GDGCHC	2 cut(s)	120, 359
MlsI	TGGCCA	1 cut(s)	687
MluCI	AATT	2 cut(s)	129, 232
MluNI	TGGCCA	1 cut(s)	687
MmeI	TCCRAC	1 cut(s)	425
MnlI	CCTC	6 cut(s)	36, 50, 83, 460, 567, 584
Mox20I	TGGCCA	1 cut(s)	687
Mph1103I	ATGCAT	1 cut(s)	502
MscI	TGGCCA	1 cut(s)	687
MseI	TTAA	2 cut(s)	405, 669
Msp20I	TGGCCA	1 cut(s)	687
MspA1I	CMGCKG	1 cut(s)	571
MspCI	CTTAAG	1 cut(s)	404
MspR9I	CCNGG	1 cut(s)	531
MunI	CAATTG	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	531
NdeI	CATATG	1 cut(s)	76
NdeII	GATC	3 cut(s)	43, 228, 585
NlaIII	CATG	2 cut(s)	500, 626
NlaIV	GGNNCC	2 cut(s)	528, 567
NsiI	ATGCAT	1 cut(s)	502
NspI	RCATGY	1 cut(s)	500
NspV	TTCGAA	1 cut(s)	63
PaeI	GCATGC	1 cut(s)	500
PfeI	GAWTC	1 cut(s)	60
PflMI	CCANNNNNTGG	1 cut(s)	714
PfoI	TCCNGGA	1 cut(s)	529
PkrI	GCNGC	3 cut(s)	222, 570, 597
PpuMI	RGGWCCY	1 cut(s)	527
Psp124BI	GAGCTC	1 cut(s)	359
Psp5II	RGGWCCY	1 cut(s)	527
Psp6I	CCWGG	1 cut(s)	529
PspGI	CCWGG	1 cut(s)	529
PspN4I	GGNNCC	2 cut(s)	528, 567
PspPI	GGNCC	3 cut(s)	447, 527, 626
PspPPI	RGGWCCY	1 cut(s)	527
PstI	CTGCAG	1 cut(s)	196
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
SacI	GAGCTC	1 cut(s)	359
SaqAI	TTAA	2 cut(s)	405, 669
SatI	GCNGC	3 cut(s)	221, 569, 596
Sau3AI	GATC	3 cut(s)	43, 228, 585
Sau96I	GGNCC	3 cut(s)	447, 527, 626
SbfI	CCTGCAGG	1 cut(s)	196
ScrFI	CCNGG	1 cut(s)	531
SdaI	CCTGCAGG	1 cut(s)	196
SduI	GDGCHC	2 cut(s)	120, 359
SetI	ASST	8 cut(s)	139, 225, 359, 418, 452, 508, 578, 652
SfaNI	GCATC	4 cut(s)	102, 177, 433, 509
SfcI	CTRYAG	2 cut(s)	83, 192
SfuI	TTCGAA	1 cut(s)	63
SinI	GGWCC	2 cut(s)	447, 527
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
SphI	GCATGC	1 cut(s)	500
Sse8387I	CCTGCAGG	1 cut(s)	196
Sse9I	AATT	2 cut(s)	129, 232
SsiI	CCGC	4 cut(s)	241, 298, 569, 718
SspMI	CTAG	2 cut(s)	5, 264
SstI	GAGCTC	1 cut(s)	359
StyD4I	CCNGG	1 cut(s)	529
TaaI	ACNGT	2 cut(s)	19, 70
TaqI	TCGA	3 cut(s)	63, 325, 657
TasI	AATT	2 cut(s)	129, 232
TauI	GCSGC	1 cut(s)	571
TfiI	GAWTC	1 cut(s)	60
Tru1I	TTAA	2 cut(s)	405, 669
Tru9I	TTAA	2 cut(s)	405, 669
TscAI	CASTG	3 cut(s)	24, 155, 618
TseI	GCWGC	2 cut(s)	220, 595
TspDTI	ATGAA	2 cut(s)	621, 653
TspRI	CASTG	3 cut(s)	24, 155, 618
Van91I	CCANNNNNTGG	1 cut(s)	714
Vha464I	CTTAAG	1 cut(s)	404
VpaK11BI	GGWCC	2 cut(s)	447, 527
XagI	CCTNNNNNAGG	1 cut(s)	284
XceI	RCATGY	1 cut(s)	500
XspI	CTAG	2 cut(s)	5, 264
Zsp2I	ATGCAT	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.