Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0007048

Physical Location & Seq

Genomic Coordinates Reverse (-)

29306402 .. 29309800

Gene Structure 3399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG146900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGCGTTTGAGAGCTATAGCAAATTTTGCACGCAATAGCTTACTCTTCACTGCAAAAACCACCACCACCACCACCAGAAGCAAGAACCATTTGAATTTCAGGGTCCCCTTCTTCATCAGAAACCACACCATGTCTGGTTCAGATCAATCCCCTTCTTTTGACACACCCAGAATGGTGGTCAAGAAGGTCCTGGCCAAGTCCCAGAGTGAGGGTGATGGAGCTGTTGTCAGAAGAGCCATTGGAATCTCTGAGTTAAGGAACCTGGATCCGTTTCTCATGCTAGACAACTTTACAGTGTCCCCTCCTGCCGGATTTCCAGATCATCCACATAGAGGATTCGAAACTGTCACATATGTGCTACAGGGAGGCATCACTCACCAAGACTTTGCAGGGCACAAGGGTACAATTGGACCTGGAGATGTGCAGTGGATGACAGCAGGCAGGGGAATAGTTCACTCTGAGATGCCTGCAGGAGCAGGACGCAACAATGGTTTGCAGCTTTGGATCAATTTAGCCCGCAAAGACAAAATGGTTGAGCCTAGATACCAAGAACTCCTAAGCAAGGAGATAAAGTGGGCAGAGAAAGATGGAGTTGAAGTTCGAGTGATAGCAGGAGAAACAATGGGAGTGAGCTCTCCTGTTTATACCCGAACACCAACATTTTTCTTTGACTTCACCCTTAAGCCTAAAGCTATTTTGCATCAAAGCATACCAGAAAGTTGGACCTCCTTTGTTTACATTATTGAAGGAGAAGGATTTTTTGGGTCAGCGCATGCATCAGCTCATCATATTCTGGTTCTGGGTCCTGGAGATGGCGTAAGCGTATGCAACAAGTCATCGGAGCCGCTGAGGTTTGTGTTGATCGGAGGGCAGCCAATAAATGAACCAGTGGTTCAGCATGGGCCTTTTGTGATGAACACACAAGCTGAAATCGAACAAACCATTAAGGACTATCATTATGGCCAGAATGGGTTTGAAAGTGCCAAGTCTTGGCGGTCTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009785 GO:0009892 GO:0009987 GO:0010033 GO:0010466 GO:0010605 GO:0016020 GO:0019222 GO:0023052 GO:0030162 GO:0030234 GO:0030414 GO:0030522 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032870 GO:0033993 GO:0042221 GO:0042742 GO:0043086 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051704 GO:0051707 GO:0051716 GO:0052547 GO:0060255 GO:0061134 GO:0065007 GO:0065009 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0071944 GO:0080090 GO:0097305 GO:0097306 GO:0098542 GO:0098772 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pirin Pirin_C

Protein Analysis

334

Amino Acids

37.03

Weight (kDa)

9.1

Isoelectric Point (pI)

47.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pirin	PF02678	76 - 169	5.1e-32	Pirin
Pirin_C	PF05726	223 - 323	8.8e-32	Pirin C-terminal cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43120 AT2G43120 AT3G59220 AT3G59260
fragaria_vesca	FvH4_4g11770 FvH4_4g11770 FvH4_4g11770 FvH4_4g11770
malus_domestica	MD04G1033300.v1.1
prunus_persica	Prupe.1G181100_v2.0.a1
pyrus_communis	pycom04g02740 pycom04g02780
rosa_chinensis	RchiOBHm_Chr4g0409021
rosa_laevigata	RLG00000008595
rosa_multiflora	Rmu_sc0000121.1_g000003 Rmu_sc0006766.1_g000003 Rmu_sc0017774.1_g000001 Rmu_sc0022473.1_g000002 Rmu_sc0026065.1_g000003
rosa_roxburghii	Rroxscaffold_5G00353500
rosa_rugosa	Rorug04G0089800
rosa_samantha	Rh4AG153500 Rh4BG151600 Rh4CG162000 Rh4DG146900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	990
AciI	CCGC	3 cut(s)	517, 845, 994
AclWI	GGATC	3 cut(s)	260, 273, 512
AcoI	YGGCCR	2 cut(s)	192, 961
AcsI	RAATTY	2 cut(s)	22, 94
AfaI	GTAC	1 cut(s)	403
AfiI	CCNNNNNNNGG	6 cut(s)	208, 308, 332, 562, 812, 990
AflII	CTTAAG	1 cut(s)	680
AgsI	TTSAA	4 cut(s)	94, 596, 746, 977
AjnI	CCWGG	4 cut(s)	189, 261, 412, 805
AjuI	GAANNNNNNNTTGG	2 cut(s)	744, 776
AleI	CACNNNNGTG	1 cut(s)	353
AloI	GAACNNNNNNTCC	2 cut(s)	582, 614
AluBI	AGCT	8 cut(s)	14, 39, 221, 499, 633, 692, 782, 926
AluI	AGCT	8 cut(s)	14, 39, 221, 499, 633, 692, 782, 926
Alw21I	GWGCWC	1 cut(s)	635
AlwI	GGATC	3 cut(s)	260, 273, 512
AoxI	GGCC	3 cut(s)	192, 902, 961
ApeKI	GCWGC	2 cut(s)	496, 871
ApoI	RAATTY	2 cut(s)	22, 94
AspLEI	GCGC	1 cut(s)	772
AspS9I	GGNCC	6 cut(s)	103, 187, 410, 723, 803, 902
AsuHPI	GGTGA	3 cut(s)	224, 368, 667
AsuII	TTCGAA	1 cut(s)	339
AvaII	GGWCC	5 cut(s)	103, 187, 410, 723, 803
BaeGI	GKGCMC	1 cut(s)	396
BalI	TGGCCA	2 cut(s)	194, 963
BamHI	GGATCC	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	635
Bbv12I	GWGCWC	1 cut(s)	635
BbvCI	CCTCAGC	1 cut(s)	848
BbvI	GCAGC	2 cut(s)	508, 883
BccI	CCATC	3 cut(s)	209, 581, 806
BciT130I	CCWGG	4 cut(s)	191, 263, 414, 807
BfaI	CTAG	2 cut(s)	281, 540
BfmI	CTRYAG	3 cut(s)	15, 359, 468
BfrI	CTTAAG	1 cut(s)	680
BisI	GCNGC	3 cut(s)	497, 845, 872
BlsI	GCNGC	3 cut(s)	498, 846, 873
Bme1390I	CCNGG	4 cut(s)	191, 263, 414, 807
Bme18I	GGWCC	5 cut(s)	103, 187, 410, 723, 803
BmgT120I	GGNCC	6 cut(s)	103, 187, 410, 723, 803, 902
BmiI	GGNNCC	6 cut(s)	104, 105, 260, 267, 804, 843
BmrFI	CCNGG	4 cut(s)	191, 263, 414, 807
BmsI	GCATC	4 cut(s)	378, 453, 709, 785
BpmI	CTGGAG	2 cut(s)	435, 828
Bpu10I	CCTNAGC	2 cut(s)	557, 848
Bpu14I	TTCGAA	1 cut(s)	339
BsaXI	ACNNNNNCTCC	8 cut(s)	210, 240, 557, 582, 587, 612, 801, 831
Bsc4I	CCNNNNNNNGG	6 cut(s)	208, 308, 332, 562, 812, 990
Bse1I	ACTGG	1 cut(s)	887
BseBI	CCWGG	4 cut(s)	191, 263, 414, 807
BseGI	GGATG	2 cut(s)	322, 435
BseLI	CCNNNNNNNGG	6 cut(s)	208, 308, 332, 562, 812, 990
BseMII	CTCAG	3 cut(s)	240, 450, 839
BseNI	ACTGG	1 cut(s)	887
BseSI	GKGCMC	1 cut(s)	396
BseXI	GCAGC	2 cut(s)	508, 883
BsgI	GTGCAG	1 cut(s)	443
BshFI	GGCC	3 cut(s)	194, 904, 963
BsiHKAI	GWGCWC	1 cut(s)	635
BsiSI	CCGG	1 cut(s)	309
BslFI	GGGAC	3 cut(s)	89, 184, 283
BslI	CCNNNNNNNGG	6 cut(s)	208, 308, 332, 562, 812, 990
BsmFI	GGGAC	3 cut(s)	89, 184, 283
BsnI	GGCC	3 cut(s)	194, 904, 963
Bsp119I	TTCGAA	1 cut(s)	339
Bsp1286I	GDGCHC	2 cut(s)	396, 635
Bsp143I	GATC	5 cut(s)	142, 265, 319, 504, 861
BspACI	CCGC	3 cut(s)	517, 845, 994
BspANI	GGCC	3 cut(s)	194, 904, 963
BspCNI	CTCAG	3 cut(s)	241, 451, 840
BspLI	GGNNCC	6 cut(s)	104, 105, 260, 267, 804, 843
BspMAI	CTGCAG	1 cut(s)	472
BspPI	GGATC	3 cut(s)	260, 273, 512
BspQI	GCTCTTC	1 cut(s)	226
BspT104I	TTCGAA	1 cut(s)	339
BspTI	CTTAAG	1 cut(s)	680
BsrI	ACTGG	1 cut(s)	887
BssMI	GATC	5 cut(s)	142, 265, 319, 504, 861
Bst2UI	CCWGG	4 cut(s)	191, 263, 414, 807
Bst4CI	ACNGT	2 cut(s)	295, 346
Bst6I	CTCTTC	2 cut(s)	50, 226
BstAFI	CTTAAG	1 cut(s)	680
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstBI	TTCGAA	1 cut(s)	339
BstC8I	GCNNGC	5 cut(s)	31, 439, 468, 517, 774
BstDEI	CTNAG	4 cut(s)	249, 459, 557, 848
BstENI	CCTNNNNNAGG	1 cut(s)	560
BstF5I	GGATG	2 cut(s)	322, 435
BstHHI	GCGC	1 cut(s)	772
BstKTI	GATC	5 cut(s)	145, 268, 322, 507, 864
BstMBI	GATC	5 cut(s)	142, 265, 319, 504, 861
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNI	CCWGG	4 cut(s)	191, 263, 414, 807
BstNSI	RCATGY	1 cut(s)	776
BstSCI	CCNGG	4 cut(s)	189, 261, 412, 805
BstSFI	CTRYAG	3 cut(s)	15, 359, 468
BstSLI	GKGCMC	1 cut(s)	396
BstV1I	GCAGC	2 cut(s)	508, 883
BstX2I	RGATCY	1 cut(s)	265
BstXI	CCANNNNNNTGG	2 cut(s)	175, 720
BstYI	RGATCY	1 cut(s)	265
BsuRI	GGCC	3 cut(s)	194, 904, 963
BtsCI	GGATG	2 cut(s)	322, 435
BtsI	GCAGTG	2 cut(s)	48, 431
BtsIMutI	CAGTG	4 cut(s)	48, 300, 431, 894
Cac8I	GCNNGC	5 cut(s)	31, 439, 468, 517, 774
CfoI	GCGC	1 cut(s)	772
Cfr13I	GGNCC	6 cut(s)	103, 187, 410, 723, 803, 902
CseI	GACGC	1 cut(s)	489
Csp6I	GTAC	1 cut(s)	402
CviAII	CATG	4 cut(s)	130, 277, 773, 899
CviQI	GTAC	1 cut(s)	402
DdeI	CTNAG	4 cut(s)	249, 459, 557, 848
DpnI	GATC	5 cut(s)	144, 267, 321, 506, 863
DpnII	GATC	5 cut(s)	142, 265, 319, 504, 861
EaeI	YGGCCR	2 cut(s)	192, 961
Eam1104I	CTCTTC	2 cut(s)	50, 226
EarI	CTCTTC	2 cut(s)	50, 226
Ecl136II	GAGCTC	1 cut(s)	633
Eco24I	GRGCYC	1 cut(s)	635
Eco47I	GGWCC	5 cut(s)	103, 187, 410, 723, 803
Eco53kI	GAGCTC	1 cut(s)	633
EcoICRI	GAGCTC	1 cut(s)	633
EcoNI	CCTNNNNNAGG	1 cut(s)	560
EcoO109I	RGGNCCY	3 cut(s)	103, 187, 803
EcoRII	CCWGG	4 cut(s)	189, 261, 412, 805
EcoT22I	ATGCAT	1 cut(s)	778
EcoT38I	GRGCYC	1 cut(s)	635
FaeI	CATG	4 cut(s)	133, 280, 776, 902
FaqI	GGGAC	3 cut(s)	89, 184, 283
FatI	CATG	4 cut(s)	129, 276, 772, 898
FauI	CCCGC	1 cut(s)	524
FauNDI	CATATG	1 cut(s)	352
Fnu4HI	GCNGC	3 cut(s)	497, 845, 872
FokI	GGATG	2 cut(s)	309, 442
FriOI	GRGCYC	1 cut(s)	635
Fsp4HI	GCNGC	3 cut(s)	497, 845, 872
FspBI	CTAG	2 cut(s)	281, 540
GlaI	GCGC	1 cut(s)	771
GluI	GCNGC	3 cut(s)	497, 845, 872
GsuI	CTGGAG	2 cut(s)	435, 828
HaeIII	GGCC	3 cut(s)	194, 904, 963
HapII	CCGG	1 cut(s)	309
HgaI	GACGC	1 cut(s)	489
HhaI	GCGC	1 cut(s)	772
Hin1II	CATG	4 cut(s)	133, 280, 776, 902
Hin6I	GCGC	1 cut(s)	770
HinP1I	GCGC	1 cut(s)	770
HinfI	GANTC	2 cut(s)	243, 336
HpaII	CCGG	1 cut(s)	309
HphI	GGTGA	3 cut(s)	224, 368, 667
Hpy166II	GTNNAC	2 cut(s)	454, 736
Hpy188I	TCNGA	7 cut(s)	119, 142, 230, 250, 460, 841, 866
Hpy188III	TCNNGA	2 cut(s)	181, 317
Hpy8I	GTNNAC	2 cut(s)	454, 736
HpyAV	CCTTC	5 cut(s)	118, 162, 178, 740, 746
HpyCH4III	ACNGT	2 cut(s)	295, 346
HpyCH4V	TGCA	9 cut(s)	29, 53, 389, 424, 470, 496, 700, 776, 828
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	4 cut(s)	249, 459, 557, 848
Hsp92II	CATG	4 cut(s)	133, 280, 776, 902
HspAI	GCGC	1 cut(s)	770
KflI	GGGWCCC	1 cut(s)	103
Kzo9I	GATC	5 cut(s)	142, 265, 319, 504, 861
LguI	GCTCTTC	1 cut(s)	226
LmnI	GCTCC	3 cut(s)	218, 473, 841
Lsp1109I	GCAGC	2 cut(s)	508, 883
LweI	GCATC	4 cut(s)	378, 453, 709, 785
MaeI	CTAG	2 cut(s)	281, 540
MaeIII	GTNAC	1 cut(s)	346
MalI	GATC	5 cut(s)	144, 267, 321, 506, 863
MboI	GATC	5 cut(s)	142, 265, 319, 504, 861
MboII	GAAGA	3 cut(s)	37, 103, 243
MfeI	CAATTG	1 cut(s)	405
MflI	RGATCY	1 cut(s)	265
MhlI	GDGCHC	2 cut(s)	396, 635
MlsI	TGGCCA	2 cut(s)	194, 963
MluCI	AATT	4 cut(s)	22, 94, 405, 508
MluNI	TGGCCA	2 cut(s)	194, 963
MmeI	TCCRAC	1 cut(s)	701
MnlI	CCTC	7 cut(s)	202, 312, 326, 359, 736, 843, 860
Mox20I	TGGCCA	2 cut(s)	194, 963
Mph1103I	ATGCAT	1 cut(s)	778
MscI	TGGCCA	2 cut(s)	194, 963
MseI	TTAA	3 cut(s)	254, 681, 945
MslI	CAYNNNNRTG	1 cut(s)	353
Msp20I	TGGCCA	2 cut(s)	194, 963
MspA1I	CMGCKG	1 cut(s)	847
MspCI	CTTAAG	1 cut(s)	680
MspI	CCGG	1 cut(s)	309
MspR9I	CCNGG	4 cut(s)	191, 263, 414, 807
MunI	CAATTG	1 cut(s)	405
MvaI	CCWGG	4 cut(s)	191, 263, 414, 807
MwoI	GCNNNNNNNGC	1 cut(s)	26
NdeI	CATATG	1 cut(s)	352
NdeII	GATC	5 cut(s)	142, 265, 319, 504, 861
NlaIII	CATG	4 cut(s)	133, 280, 776, 902
NlaIV	GGNNCC	6 cut(s)	104, 105, 260, 267, 804, 843
NmuCI	GTSAC	1 cut(s)	346
NsiI	ATGCAT	1 cut(s)	778
NspI	RCATGY	1 cut(s)	776
NspV	TTCGAA	1 cut(s)	339
OliI	CACNNNNGTG	1 cut(s)	353
PaeI	GCATGC	1 cut(s)	776
PciSI	GCTCTTC	1 cut(s)	226
PfeI	GAWTC	2 cut(s)	243, 336
PflMI	CCANNNNNTGG	1 cut(s)	990
PfoI	TCCNGGA	1 cut(s)	805
PkrI	GCNGC	3 cut(s)	498, 846, 873
PpuMI	RGGWCCY	3 cut(s)	103, 187, 803
Psp124BI	GAGCTC	1 cut(s)	635
Psp5II	RGGWCCY	3 cut(s)	103, 187, 803
Psp6I	CCWGG	4 cut(s)	189, 261, 412, 805
PspGI	CCWGG	4 cut(s)	189, 261, 412, 805
PspN4I	GGNNCC	6 cut(s)	104, 105, 260, 267, 804, 843
PspPI	GGNCC	6 cut(s)	103, 187, 410, 723, 803, 902
PspPPI	RGGWCCY	3 cut(s)	103, 187, 803
PstI	CTGCAG	1 cut(s)	472
PsuI	RGATCY	1 cut(s)	265
RsaI	GTAC	1 cut(s)	403
RsaNI	GTAC	1 cut(s)	402
RseI	CAYNNNNRTG	1 cut(s)	353
SacI	GAGCTC	1 cut(s)	635
SapI	GCTCTTC	1 cut(s)	226
SaqAI	TTAA	3 cut(s)	254, 681, 945
SatI	GCNGC	3 cut(s)	497, 845, 872
Sau3AI	GATC	5 cut(s)	142, 265, 319, 504, 861
Sau96I	GGNCC	6 cut(s)	103, 187, 410, 723, 803, 902
SbfI	CCTGCAGG	1 cut(s)	472
ScrFI	CCNGG	4 cut(s)	191, 263, 414, 807
SdaI	CCTGCAGG	1 cut(s)	472
SduI	GDGCHC	2 cut(s)	396, 635
SfaNI	GCATC	4 cut(s)	378, 453, 709, 785
SfcI	CTRYAG	3 cut(s)	15, 359, 468
SfuI	TTCGAA	1 cut(s)	339
SinI	GGWCC	5 cut(s)	103, 187, 410, 723, 803
SmiMI	CAYNNNNRTG	1 cut(s)	353
SmlI	CTYRAG	1 cut(s)	680
SmoI	CTYRAG	1 cut(s)	680
SphI	GCATGC	1 cut(s)	776
Sse8387I	CCTGCAGG	1 cut(s)	472
Sse9I	AATT	4 cut(s)	22, 94, 405, 508
SsiI	CCGC	3 cut(s)	517, 845, 994
SspMI	CTAG	2 cut(s)	281, 540
SstI	GAGCTC	1 cut(s)	635
StyD4I	CCNGG	4 cut(s)	189, 261, 412, 805
TaaI	ACNGT	2 cut(s)	295, 346
TaqI	TCGA	3 cut(s)	339, 601, 933
TasI	AATT	4 cut(s)	22, 94, 405, 508
TauI	GCSGC	1 cut(s)	847
TfiI	GAWTC	2 cut(s)	243, 336
Tru1I	TTAA	3 cut(s)	254, 681, 945
Tru9I	TTAA	3 cut(s)	254, 681, 945
TscAI	CASTG	4 cut(s)	55, 300, 431, 894
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	2 cut(s)	496, 871
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	3 cut(s)	103, 897, 929
TspGWI	ACGGA	1 cut(s)	258
TspRI	CASTG	4 cut(s)	55, 300, 431, 894
Van91I	CCANNNNNTGG	1 cut(s)	990
Vha464I	CTTAAG	1 cut(s)	680
VpaK11BI	GGWCC	5 cut(s)	103, 187, 410, 723, 803
XagI	CCTNNNNNAGG	1 cut(s)	560
XapI	RAATTY	2 cut(s)	22, 94
XceI	RCATGY	1 cut(s)	776
XcmI	CCANNNNNNNNNTGG	1 cut(s)	131
XspI	CTAG	2 cut(s)	281, 540
Zsp2I	ATGCAT	1 cut(s)	778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.