Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007048

Physical Location & Seq

Genomic Coordinates Reverse (-)

15495184 .. 15498725

Gene Structure 3542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g11770.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGCGTTTGAGAGCTCTAGCAAATTTTGCACACAATAGCTTGCTCTTCACTGTAAAAACCACCACCAACAGAAGCAAGAACCATTTAAGTTTTAGAGCCCCTTTCTTCATCAGAAACCACACCATGTCTGGTTCAGATCAATCCCCTTCTTTCAGCACACCTAGAATGGTGGTCAAGAAGGTCCTGGCCAAGTCCCAGAGCGAGGGTGATGGAGCTGTTGTCAGAAGAGCCATTGGAATCTCTGAGTTGAGGAACCTGGATCCGTTTCTCATGCTAGATGACTTTTCAGTGTCCCCTCCTGCCGGATTTCCGGATCATCCACATAGAGGGTTCGAGACTGTCACATATGTGCTACAGGGAGGCATCACTCACCAAGACTTTGCAGGGCACAAGGGTACAATTGGAGTTGGAGATGTACAGTGGATGACAGCAGGCAGGGGCATAGTTCACTCTGAGATGCCTGCAGGAGCAGGACGCAACAATGGTTTGCAGCTTTGGATCAATTTAGCCCGCAAAGATAAAATGGTTGAGCCTAGATACCAAGAACTCCTAAGCAAGGAGATAAAGCAGGCAGAGAAAGATGGAGTTCAAGTTCGAGTGATAGCAGGAGAAACAATGGGAGTGAGCTCTCCTGTTTATACCCGAACACCAACATTTTACTTTGACTTCACCCTTAAGCCTAAAGCAATTTTGCATCAAAGCATCCCAGAAGGTTGGACTTCCTTTGTCTACATTATTGATGGAGAAGGGGTTTTTGGGTCAGCGCATGCATCAGCTCATCATATTCTGGTTTTGGGTCCTGGAGATGGCATAAGCGTGTGCAACAAGTCATCAGAGCTGCTGAGGTTTGTGTTGATCGGAGGCCAGCCAATAAATGAACCAGTGGTTCAGCATGGGCCTTTTGTGATGAACACACAAGCTGAAATTGAACAGACCATTAGAGACTATCATTATGGCCAGAATGGGTTTGAAAGTGCCAAGTCTTGGAGCTCTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009785 GO:0009892 GO:0009987 GO:0010033 GO:0010466 GO:0010605 GO:0016020 GO:0019222 GO:0023052 GO:0030162 GO:0030234 GO:0030414 GO:0030522 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032870 GO:0033993 GO:0042221 GO:0042742 GO:0043086 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051704 GO:0051707 GO:0051716 GO:0052547 GO:0060255 GO:0061134 GO:0065007 GO:0065009 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0071944 GO:0080090 GO:0097305 GO:0097306 GO:0098542 GO:0098772 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pirin Pirin_C

Protein Analysis

333

Amino Acids

36.61

Weight (kDa)

8.89

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pirin	PF02678	5 - 32	1.2e-06	Pirin
Pirin_C	PF05726	85 - 187	7e-32	Pirin C-terminal cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43120 AT2G43120 AT3G59220 AT3G59260
fragaria_vesca	FvH4_4g11770 FvH4_4g11770 FvH4_4g11770 FvH4_4g11770
malus_domestica	MD04G1033300.v1.1
prunus_persica	Prupe.1G181100_v2.0.a1
pyrus_communis	pycom04g02740 pycom04g02780
rosa_chinensis	RchiOBHm_Chr4g0409021
rosa_laevigata	RLG00000008595
rosa_multiflora	Rmu_sc0000121.1_g000003 Rmu_sc0006766.1_g000003 Rmu_sc0017774.1_g000001 Rmu_sc0022473.1_g000002 Rmu_sc0026065.1_g000003
rosa_roxburghii	Rroxscaffold_5G00353500
rosa_rugosa	Rorug04G0089800
rosa_samantha	Rh4AG153500 Rh4BG151600 Rh4CG162000 Rh4DG146900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	984
AccI	GTMKAC	1 cut(s)	729
AccIII	TCCGGA	1 cut(s)	310
AciI	CCGC	1 cut(s)	511
AclWI	GGATC	4 cut(s)	254, 267, 321, 506
AcoI	YGGCCR	2 cut(s)	186, 955
AcsI	RAATTY	1 cut(s)	22
AfaI	GTAC	2 cut(s)	397, 417
AfiI	CCNNNNNNNGG	6 cut(s)	202, 302, 326, 556, 806, 984
AflII	CTTAAG	1 cut(s)	674
AgsI	TTSAA	3 cut(s)	590, 929, 971
AjnI	CCWGG	3 cut(s)	183, 255, 799
AjuI	GAANNNNNNNTTGG	2 cut(s)	738, 770
AleI	CACNNNNGTG	1 cut(s)	347
AloI	GAACNNNNNNTCC	2 cut(s)	576, 608
AluBI	AGCT	9 cut(s)	14, 39, 215, 493, 627, 776, 838, 920, 990
AluI	AGCT	9 cut(s)	14, 39, 215, 493, 627, 776, 838, 920, 990
Alw21I	GWGCWC	3 cut(s)	16, 629, 992
Alw26I	GTCTC	2 cut(s)	329, 936
AlwI	GGATC	4 cut(s)	254, 267, 321, 506
Aor13HI	TCCGGA	1 cut(s)	310
AoxI	GGCC	4 cut(s)	186, 862, 896, 955
ApeKI	GCWGC	2 cut(s)	490, 838
ApoI	RAATTY	1 cut(s)	22
AspLEI	GCGC	1 cut(s)	766
AspS9I	GGNCC	3 cut(s)	181, 797, 896
AsuHPI	GGTGA	3 cut(s)	218, 362, 661
AvaII	GGWCC	2 cut(s)	181, 797
BaeGI	GKGCMC	1 cut(s)	390
BalI	TGGCCA	2 cut(s)	188, 957
BamHI	GGATCC	1 cut(s)	259
BanII	GRGCYC	4 cut(s)	16, 100, 629, 992
Bbv12I	GWGCWC	3 cut(s)	16, 629, 992
BbvCI	CCTCAGC	1 cut(s)	842
BbvI	GCAGC	2 cut(s)	502, 825
BccI	CCATC	4 cut(s)	203, 575, 734, 800
BciT130I	CCWGG	3 cut(s)	185, 257, 801
BcoDI	GTCTC	2 cut(s)	329, 936
BfaI	CTAG	4 cut(s)	17, 162, 275, 534
BfmI	CTRYAG	2 cut(s)	353, 462
BfrI	CTTAAG	1 cut(s)	674
BisI	GCNGC	2 cut(s)	491, 839
BlsI	GCNGC	2 cut(s)	492, 840
Bme1390I	CCNGG	3 cut(s)	185, 257, 801
Bme18I	GGWCC	2 cut(s)	181, 797
BmgT120I	GGNCC	3 cut(s)	181, 797, 896
BmiI	GGNNCC	3 cut(s)	254, 261, 798
BmrFI	CCNGG	3 cut(s)	185, 257, 801
BmsI	GCATC	5 cut(s)	372, 447, 703, 711, 779
BpmI	CTGGAG	1 cut(s)	822
Bpu10I	CCTNAGC	2 cut(s)	551, 842
BsaWI	WCCGGW	1 cut(s)	310
BsaXI	ACNNNNNCTCC	6 cut(s)	204, 234, 576, 606, 735, 765
Bsc4I	CCNNNNNNNGG	6 cut(s)	202, 302, 326, 556, 806, 984
Bse1I	ACTGG	1 cut(s)	881
BseAI	TCCGGA	1 cut(s)	310
BseBI	CCWGG	3 cut(s)	185, 257, 801
BseGI	GGATG	3 cut(s)	316, 429, 702
BseLI	CCNNNNNNNGG	6 cut(s)	202, 302, 326, 556, 806, 984
BseMII	CTCAG	3 cut(s)	234, 444, 833
BseNI	ACTGG	1 cut(s)	881
BseSI	GKGCMC	1 cut(s)	390
BseXI	GCAGC	2 cut(s)	502, 825
BshFI	GGCC	4 cut(s)	188, 864, 898, 957
BsiHKAI	GWGCWC	3 cut(s)	16, 629, 992
BsiSI	CCGG	2 cut(s)	303, 311
BslFI	GGGAC	2 cut(s)	178, 277
BslI	CCNNNNNNNGG	6 cut(s)	202, 302, 326, 556, 806, 984
BsmAI	GTCTC	2 cut(s)	329, 936
BsmFI	GGGAC	2 cut(s)	178, 277
BsnI	GGCC	4 cut(s)	188, 864, 898, 957
Bsp1286I	GDGCHC	5 cut(s)	16, 100, 390, 629, 992
Bsp13I	TCCGGA	1 cut(s)	310
Bsp1407I	TGTACA	1 cut(s)	415
Bsp143I	GATC	5 cut(s)	136, 259, 313, 498, 855
BspACI	CCGC	1 cut(s)	511
BspANI	GGCC	4 cut(s)	188, 864, 898, 957
BspCNI	CTCAG	3 cut(s)	235, 445, 834
BspEI	TCCGGA	1 cut(s)	310
BspLI	GGNNCC	3 cut(s)	254, 261, 798
BspMAI	CTGCAG	1 cut(s)	466
BspPI	GGATC	4 cut(s)	254, 267, 321, 506
BspQI	GCTCTTC	2 cut(s)	50, 220
BspTI	CTTAAG	1 cut(s)	674
BsrGI	TGTACA	1 cut(s)	415
BsrI	ACTGG	1 cut(s)	881
BssMI	GATC	5 cut(s)	136, 259, 313, 498, 855
Bst2UI	CCWGG	3 cut(s)	185, 257, 801
Bst4CI	ACNGT	3 cut(s)	52, 340, 420
Bst6I	CTCTTC	2 cut(s)	50, 220
BstAFI	CTTAAG	1 cut(s)	674
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstAUI	TGTACA	1 cut(s)	415
BstC8I	GCNNGC	7 cut(s)	41, 433, 462, 511, 570, 768, 866
BstDEI	CTNAG	4 cut(s)	243, 453, 551, 842
BstENI	CCTNNNNNAGG	1 cut(s)	554
BstF5I	GGATG	3 cut(s)	316, 429, 702
BstHHI	GCGC	1 cut(s)	766
BstKTI	GATC	5 cut(s)	139, 262, 316, 501, 858
BstMAI	GTCTC	2 cut(s)	329, 936
BstMBI	GATC	5 cut(s)	136, 259, 313, 498, 855
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNI	CCWGG	3 cut(s)	185, 257, 801
BstNSI	RCATGY	1 cut(s)	770
BstSCI	CCNGG	3 cut(s)	183, 255, 799
BstSFI	CTRYAG	2 cut(s)	353, 462
BstSLI	GKGCMC	1 cut(s)	390
BstV1I	GCAGC	2 cut(s)	502, 825
BstX2I	RGATCY	1 cut(s)	259
BstXI	CCANNNNNNTGG	1 cut(s)	714
BstYI	RGATCY	1 cut(s)	259
BsuRI	GGCC	4 cut(s)	188, 864, 898, 957
BtsCI	GGATG	3 cut(s)	316, 429, 702
BtsIMutI	CAGTG	4 cut(s)	48, 294, 425, 888
Cac8I	GCNNGC	7 cut(s)	41, 433, 462, 511, 570, 768, 866
CfoI	GCGC	1 cut(s)	766
Cfr13I	GGNCC	3 cut(s)	181, 797, 896
CseI	GACGC	1 cut(s)	483
Csp6I	GTAC	2 cut(s)	396, 416
CviAII	CATG	4 cut(s)	124, 271, 767, 893
CviQI	GTAC	2 cut(s)	396, 416
DdeI	CTNAG	4 cut(s)	243, 453, 551, 842
DpnI	GATC	5 cut(s)	138, 261, 315, 500, 857
DpnII	GATC	5 cut(s)	136, 259, 313, 498, 855
EaeI	YGGCCR	2 cut(s)	186, 955
Eam1104I	CTCTTC	2 cut(s)	50, 220
EarI	CTCTTC	2 cut(s)	50, 220
Ecl136II	GAGCTC	3 cut(s)	14, 627, 990
Eco24I	GRGCYC	4 cut(s)	16, 100, 629, 992
Eco47I	GGWCC	2 cut(s)	181, 797
Eco53kI	GAGCTC	3 cut(s)	14, 627, 990
EcoICRI	GAGCTC	3 cut(s)	14, 627, 990
EcoNI	CCTNNNNNAGG	1 cut(s)	554
EcoO109I	RGGNCCY	2 cut(s)	181, 797
EcoRII	CCWGG	3 cut(s)	183, 255, 799
EcoT22I	ATGCAT	1 cut(s)	772
EcoT38I	GRGCYC	4 cut(s)	16, 100, 629, 992
FaeI	CATG	4 cut(s)	127, 274, 770, 896
FaqI	GGGAC	2 cut(s)	178, 277
FatI	CATG	4 cut(s)	123, 270, 766, 892
FauI	CCCGC	1 cut(s)	518
FauNDI	CATATG	1 cut(s)	346
FblI	GTMKAC	1 cut(s)	729
Fnu4HI	GCNGC	2 cut(s)	491, 839
FokI	GGATG	3 cut(s)	303, 436, 689
FriOI	GRGCYC	4 cut(s)	16, 100, 629, 992
Fsp4HI	GCNGC	2 cut(s)	491, 839
FspBI	CTAG	4 cut(s)	17, 162, 275, 534
GlaI	GCGC	1 cut(s)	765
GluI	GCNGC	2 cut(s)	491, 839
GsuI	CTGGAG	1 cut(s)	822
HaeIII	GGCC	4 cut(s)	188, 864, 898, 957
HapII	CCGG	2 cut(s)	303, 311
HgaI	GACGC	1 cut(s)	483
HhaI	GCGC	1 cut(s)	766
Hin1II	CATG	4 cut(s)	127, 274, 770, 896
Hin6I	GCGC	1 cut(s)	764
HinP1I	GCGC	1 cut(s)	764
HinfI	GANTC	1 cut(s)	237
HpaII	CCGG	2 cut(s)	303, 311
HphI	GGTGA	3 cut(s)	218, 362, 661
Hpy166II	GTNNAC	2 cut(s)	448, 730
Hpy188I	TCNGA	7 cut(s)	113, 136, 224, 244, 454, 835, 860
Hpy188III	TCNNGA	3 cut(s)	175, 311, 334
Hpy8I	GTNNAC	2 cut(s)	448, 730
HpyAV	CCTTC	4 cut(s)	156, 172, 704, 740
HpyCH4III	ACNGT	3 cut(s)	52, 340, 420
HpyCH4V	TGCA	7 cut(s)	29, 383, 464, 490, 694, 770, 822
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	4 cut(s)	243, 453, 551, 842
Hsp92II	CATG	4 cut(s)	127, 274, 770, 896
HspAI	GCGC	1 cut(s)	764
Kpn2I	TCCGGA	1 cut(s)	310
Kzo9I	GATC	5 cut(s)	136, 259, 313, 498, 855
LguI	GCTCTTC	2 cut(s)	50, 220
LmnI	GCTCC	3 cut(s)	212, 467, 987
Lsp1109I	GCAGC	2 cut(s)	502, 825
LweI	GCATC	5 cut(s)	372, 447, 703, 711, 779
MaeI	CTAG	4 cut(s)	17, 162, 275, 534
MaeIII	GTNAC	1 cut(s)	340
MalI	GATC	5 cut(s)	138, 261, 315, 500, 857
MboI	GATC	5 cut(s)	136, 259, 313, 498, 855
MboII	GAAGA	3 cut(s)	37, 97, 237
MfeI	CAATTG	1 cut(s)	399
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	5 cut(s)	16, 100, 390, 629, 992
MlsI	TGGCCA	2 cut(s)	188, 957
MluCI	AATT	5 cut(s)	22, 399, 502, 687, 924
MluNI	TGGCCA	2 cut(s)	188, 957
MmeI	TCCRAC	2 cut(s)	388, 695
MnlI	CCTC	7 cut(s)	196, 243, 306, 320, 353, 837, 854
Mox20I	TGGCCA	2 cut(s)	188, 957
Mph1103I	ATGCAT	1 cut(s)	772
MroI	TCCGGA	1 cut(s)	310
MscI	TGGCCA	2 cut(s)	188, 957
MseI	TTAA	2 cut(s)	86, 675
MslI	CAYNNNNRTG	2 cut(s)	347, 815
Msp20I	TGGCCA	2 cut(s)	188, 957
MspCI	CTTAAG	1 cut(s)	674
MspI	CCGG	2 cut(s)	303, 311
MspR9I	CCNGG	3 cut(s)	185, 257, 801
MunI	CAATTG	1 cut(s)	399
MvaI	CCWGG	3 cut(s)	185, 257, 801
MwoI	GCNNNNNNNGC	1 cut(s)	26
NdeI	CATATG	1 cut(s)	346
NdeII	GATC	5 cut(s)	136, 259, 313, 498, 855
NlaIII	CATG	4 cut(s)	127, 274, 770, 896
NlaIV	GGNNCC	3 cut(s)	254, 261, 798
NmuCI	GTSAC	1 cut(s)	340
NsiI	ATGCAT	1 cut(s)	772
NspI	RCATGY	1 cut(s)	770
OliI	CACNNNNGTG	1 cut(s)	347
PaeI	GCATGC	1 cut(s)	770
PciSI	GCTCTTC	2 cut(s)	50, 220
PfeI	GAWTC	1 cut(s)	237
PflMI	CCANNNNNTGG	1 cut(s)	984
PfoI	TCCNGGA	1 cut(s)	799
PkrI	GCNGC	2 cut(s)	492, 840
PpuMI	RGGWCCY	2 cut(s)	181, 797
Psp124BI	GAGCTC	3 cut(s)	16, 629, 992
Psp5II	RGGWCCY	2 cut(s)	181, 797
Psp6I	CCWGG	3 cut(s)	183, 255, 799
PspGI	CCWGG	3 cut(s)	183, 255, 799
PspN4I	GGNNCC	3 cut(s)	254, 261, 798
PspPI	GGNCC	3 cut(s)	181, 797, 896
PspPPI	RGGWCCY	2 cut(s)	181, 797
PstI	CTGCAG	1 cut(s)	466
PsuI	RGATCY	1 cut(s)	259
RsaI	GTAC	2 cut(s)	397, 417
RsaNI	GTAC	2 cut(s)	396, 416
RseI	CAYNNNNRTG	2 cut(s)	347, 815
SacI	GAGCTC	3 cut(s)	16, 629, 992
SapI	GCTCTTC	2 cut(s)	50, 220
SaqAI	TTAA	2 cut(s)	86, 675
SatI	GCNGC	2 cut(s)	491, 839
Sau3AI	GATC	5 cut(s)	136, 259, 313, 498, 855
Sau96I	GGNCC	3 cut(s)	181, 797, 896
SbfI	CCTGCAGG	1 cut(s)	466
ScrFI	CCNGG	3 cut(s)	185, 257, 801
SdaI	CCTGCAGG	1 cut(s)	466
SduI	GDGCHC	5 cut(s)	16, 100, 390, 629, 992
SfaNI	GCATC	5 cut(s)	372, 447, 703, 711, 779
SfcI	CTRYAG	2 cut(s)	353, 462
SinI	GGWCC	2 cut(s)	181, 797
SmiMI	CAYNNNNRTG	2 cut(s)	347, 815
SmlI	CTYRAG	1 cut(s)	674
SmoI	CTYRAG	1 cut(s)	674
SphI	GCATGC	1 cut(s)	770
Sse8387I	CCTGCAGG	1 cut(s)	466
Sse9I	AATT	5 cut(s)	22, 399, 502, 687, 924
SsiI	CCGC	1 cut(s)	511
SspMI	CTAG	4 cut(s)	17, 162, 275, 534
SstI	GAGCTC	3 cut(s)	16, 629, 992
StyD4I	CCNGG	3 cut(s)	183, 255, 799
TaaI	ACNGT	3 cut(s)	52, 340, 420
TaqI	TCGA	2 cut(s)	333, 595
TasI	AATT	5 cut(s)	22, 399, 502, 687, 924
TatI	WGTACW	1 cut(s)	415
TfiI	GAWTC	1 cut(s)	237
Tru1I	TTAA	2 cut(s)	86, 675
Tru9I	TTAA	2 cut(s)	86, 675
TscAI	CASTG	4 cut(s)	55, 294, 425, 888
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	2 cut(s)	490, 838
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	3 cut(s)	97, 891, 923
TspGWI	ACGGA	1 cut(s)	252
TspRI	CASTG	4 cut(s)	55, 294, 425, 888
Van91I	CCANNNNNTGG	1 cut(s)	984
Vha464I	CTTAAG	1 cut(s)	674
VpaK11BI	GGWCC	2 cut(s)	181, 797
XagI	CCTNNNNNAGG	1 cut(s)	554
XapI	RAATTY	1 cut(s)	22
XceI	RCATGY	1 cut(s)	770
XcmI	CCANNNNNNNNNTGG	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	729
XspI	CTAG	4 cut(s)	17, 162, 275, 534
Zsp2I	ATGCAT	1 cut(s)	772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.