Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026065.1

Orthogroup ID

OG0007048

Physical Location & Seq

Genomic Coordinates Forward (+)

8331 .. 10978

Gene Structure 2648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026065.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

atggtggtcaagaaggtcctggccaagtcccagagtgagggtgatggagctgttgtcagaagagccattggaatctctgagttaaggaacctggatccgtttctcatgctagataactttacagtgtcccctcctgccggatttccagatcatccacatagaggattcgaaactgtcacatatgtgctacagggaggcatcactcaccaagactttgccgggcacaagggtacaattggagctggagatgtgcagtggatgaccgcaggcaggggaatagttcactctgagatgcctgcaggagcaggacgcaacaatggtttgcagctttggatcaatttagcccgcaaagacaaaatggttgagcctagataccaagaactcctaagcaaggagataaagtgggcagagaaagatggagttgaagttcgagtgatagcaggagaaacaatgggagtgagctctcctgtttatacccgaacaccaacatttttctttgacttcacccttaggcctaaagctattttgcatcaaagcataccagaaagttggacctcctttgtttacattattgaaggagaaggattttttgggtcagcgcatgcatcagctcatcatattctggttctgggtcctggagatggcgtaagtgtatgcaacaagtcatcggagccgctaaggtttgtgttgatcggagggcagccaataaatgaaccagtggttcagcatgggccttttgtgatgaacacacaagctgaaatcgaacaaaccattaaggactatcattatggccaaaatgggtttgaaagtgccaagtcttggcggtctcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009785 GO:0009892 GO:0009987 GO:0010033 GO:0010466 GO:0010605 GO:0016020 GO:0019222 GO:0023052 GO:0030162 GO:0030234 GO:0030414 GO:0030522 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032870 GO:0033993 GO:0042221 GO:0042742 GO:0043086 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051704 GO:0051707 GO:0051716 GO:0052547 GO:0060255 GO:0061134 GO:0065007 GO:0065009 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0071944 GO:0080090 GO:0097305 GO:0097306 GO:0098542 GO:0098772 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pirin Pirin_C

Protein Analysis

277

Amino Acids

30.49

Weight (kDa)

6.41

Isoelectric Point (pI)

48.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43120 AT2G43120 AT3G59220 AT3G59260
fragaria_vesca	FvH4_4g11770 FvH4_4g11770 FvH4_4g11770 FvH4_4g11770
malus_domestica	MD04G1033300.v1.1
prunus_persica	Prupe.1G181100_v2.0.a1
pyrus_communis	pycom04g02740 pycom04g02780
rosa_chinensis	RchiOBHm_Chr4g0409021
rosa_laevigata	RLG00000008595
rosa_multiflora	Rmu_sc0000121.1_g000003 Rmu_sc0006766.1_g000003 Rmu_sc0017774.1_g000001 Rmu_sc0022473.1_g000002 Rmu_sc0026065.1_g000003
rosa_roxburghii	Rroxscaffold_5G00353500
rosa_rugosa	Rorug04G0089800
rosa_samantha	Rh4AG153500 Rh4BG151600 Rh4CG162000 Rh4DG146900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	819
AciI	CCGC	4 cut(s)	264, 346, 674, 823
AclWI	GGATC	3 cut(s)	89, 102, 341
AcoI	YGGCCR	2 cut(s)	21, 790
AfaI	GTAC	1 cut(s)	232
AfiI	CCNNNNNNNGG	7 cut(s)	37, 137, 161, 270, 391, 641, 819
AgsI	TTSAA	3 cut(s)	425, 575, 806
AjnI	CCWGG	3 cut(s)	18, 90, 634
AjuI	GAANNNNNNNTTGG	2 cut(s)	573, 605
AleI	CACNNNNGTG	1 cut(s)	182
AloI	GAACNNNNNNTCC	2 cut(s)	411, 443
AluBI	AGCT	7 cut(s)	50, 242, 328, 462, 521, 611, 755
AluI	AGCT	7 cut(s)	50, 242, 328, 462, 521, 611, 755
Alw21I	GWGCWC	1 cut(s)	464
AlwI	GGATC	3 cut(s)	89, 102, 341
AoxI	GGCC	4 cut(s)	21, 512, 731, 790
ApeKI	GCWGC	2 cut(s)	325, 700
AspLEI	GCGC	1 cut(s)	601
AspS9I	GGNCC	4 cut(s)	16, 552, 632, 731
AsuC2I	CCSGG	1 cut(s)	220
AsuHPI	GGTGA	3 cut(s)	53, 197, 496
AsuII	TTCGAA	1 cut(s)	168
AvaII	GGWCC	3 cut(s)	16, 552, 632
AxyI	CCTNAGG	1 cut(s)	509
BaeGI	GKGCMC	1 cut(s)	225
BalI	TGGCCA	2 cut(s)	23, 792
BamHI	GGATCC	1 cut(s)	94
BanII	GRGCYC	1 cut(s)	464
Bbv12I	GWGCWC	1 cut(s)	464
BbvI	GCAGC	2 cut(s)	337, 712
BccI	CCATC	3 cut(s)	38, 410, 635
BciT130I	CCWGG	3 cut(s)	20, 92, 636
BcnI	CCSGG	1 cut(s)	220
BfaI	CTAG	2 cut(s)	110, 369
BfmI	CTRYAG	2 cut(s)	188, 297
BisI	GCNGC	3 cut(s)	326, 674, 701
BlsI	GCNGC	3 cut(s)	327, 675, 702
Bme1390I	CCNGG	4 cut(s)	20, 92, 220, 636
Bme18I	GGWCC	3 cut(s)	16, 552, 632
BmgT120I	GGNCC	4 cut(s)	16, 552, 632, 731
BmiI	GGNNCC	4 cut(s)	89, 96, 633, 672
BmrFI	CCNGG	4 cut(s)	20, 92, 220, 636
BmsI	GCATC	4 cut(s)	207, 282, 538, 614
BpmI	CTGGAG	2 cut(s)	264, 657
Bpu10I	CCTNAGC	2 cut(s)	386, 677
Bpu14I	TTCGAA	1 cut(s)	168
BpuMI	CCSGG	1 cut(s)	220
BsaXI	ACNNNNNCTCC	8 cut(s)	39, 69, 386, 411, 416, 441, 630, 660
Bsc4I	CCNNNNNNNGG	7 cut(s)	37, 137, 161, 270, 391, 641, 819
Bse1I	ACTGG	1 cut(s)	716
Bse21I	CCTNAGG	1 cut(s)	509
BseBI	CCWGG	3 cut(s)	20, 92, 636
BseGI	GGATG	2 cut(s)	151, 264
BseLI	CCNNNNNNNGG	7 cut(s)	37, 137, 161, 270, 391, 641, 819
BseMII	CTCAG	2 cut(s)	69, 279
BseNI	ACTGG	1 cut(s)	716
BseSI	GKGCMC	1 cut(s)	225
BseXI	GCAGC	2 cut(s)	337, 712
BsgI	GTGCAG	1 cut(s)	272
BshFI	GGCC	4 cut(s)	23, 514, 733, 792
BsiHKAI	GWGCWC	1 cut(s)	464
BsiSI	CCGG	2 cut(s)	138, 219
BslFI	GGGAC	2 cut(s)	13, 112
BslI	CCNNNNNNNGG	7 cut(s)	37, 137, 161, 270, 391, 641, 819
BsmFI	GGGAC	2 cut(s)	13, 112
BsnI	GGCC	4 cut(s)	23, 514, 733, 792
Bsp119I	TTCGAA	1 cut(s)	168
Bsp1286I	GDGCHC	2 cut(s)	225, 464
Bsp143I	GATC	4 cut(s)	94, 148, 333, 690
BspACI	CCGC	4 cut(s)	264, 346, 674, 823
BspANI	GGCC	4 cut(s)	23, 514, 733, 792
BspCNI	CTCAG	2 cut(s)	70, 280
BspLI	GGNNCC	4 cut(s)	89, 96, 633, 672
BspMAI	CTGCAG	1 cut(s)	301
BspPI	GGATC	3 cut(s)	89, 102, 341
BspQI	GCTCTTC	1 cut(s)	55
BspT104I	TTCGAA	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	716
BssMI	GATC	4 cut(s)	94, 148, 333, 690
Bst2UI	CCWGG	3 cut(s)	20, 92, 636
Bst4CI	ACNGT	2 cut(s)	124, 175
Bst6I	CTCTTC	1 cut(s)	55
BstBI	TTCGAA	1 cut(s)	168
BstC8I	GCNNGC	4 cut(s)	268, 297, 346, 603
BstDEI	CTNAG	5 cut(s)	78, 288, 386, 509, 677
BstENI	CCTNNNNNAGG	1 cut(s)	389
BstF5I	GGATG	2 cut(s)	151, 264
BstHHI	GCGC	1 cut(s)	601
BstKTI	GATC	4 cut(s)	97, 151, 336, 693
BstMBI	GATC	4 cut(s)	94, 148, 333, 690
BstNI	CCWGG	3 cut(s)	20, 92, 636
BstNSI	RCATGY	1 cut(s)	605
BstSCI	CCNGG	4 cut(s)	18, 90, 218, 634
BstSFI	CTRYAG	2 cut(s)	188, 297
BstSLI	GKGCMC	1 cut(s)	225
BstV1I	GCAGC	2 cut(s)	337, 712
BstX2I	RGATCY	1 cut(s)	94
BstXI	CCANNNNNNTGG	1 cut(s)	549
BstYI	RGATCY	1 cut(s)	94
Bsu36I	CCTNAGG	1 cut(s)	509
BsuRI	GGCC	4 cut(s)	23, 514, 733, 792
BtsCI	GGATG	2 cut(s)	151, 264
BtsI	GCAGTG	1 cut(s)	260
BtsIMutI	CAGTG	3 cut(s)	129, 260, 723
Cac8I	GCNNGC	4 cut(s)	268, 297, 346, 603
CfoI	GCGC	1 cut(s)	601
Cfr13I	GGNCC	4 cut(s)	16, 552, 632, 731
CseI	GACGC	1 cut(s)	318
Csp6I	GTAC	1 cut(s)	231
CviAII	CATG	3 cut(s)	106, 602, 728
CviQI	GTAC	1 cut(s)	231
DdeI	CTNAG	5 cut(s)	78, 288, 386, 509, 677
DpnI	GATC	4 cut(s)	96, 150, 335, 692
DpnII	GATC	4 cut(s)	94, 148, 333, 690
EaeI	YGGCCR	2 cut(s)	21, 790
Eam1104I	CTCTTC	1 cut(s)	55
EarI	CTCTTC	1 cut(s)	55
Ecl136II	GAGCTC	1 cut(s)	462
Eco147I	AGGCCT	1 cut(s)	514
Eco24I	GRGCYC	1 cut(s)	464
Eco47I	GGWCC	3 cut(s)	16, 552, 632
Eco53kI	GAGCTC	1 cut(s)	462
Eco81I	CCTNAGG	1 cut(s)	509
EcoICRI	GAGCTC	1 cut(s)	462
EcoNI	CCTNNNNNAGG	1 cut(s)	389
EcoO109I	RGGNCCY	2 cut(s)	16, 632
EcoRII	CCWGG	3 cut(s)	18, 90, 634
EcoT22I	ATGCAT	1 cut(s)	607
EcoT38I	GRGCYC	1 cut(s)	464
FaeI	CATG	3 cut(s)	109, 605, 731
FaqI	GGGAC	2 cut(s)	13, 112
FatI	CATG	3 cut(s)	105, 601, 727
FauI	CCCGC	1 cut(s)	353
FauNDI	CATATG	1 cut(s)	181
Fnu4HI	GCNGC	3 cut(s)	326, 674, 701
FokI	GGATG	2 cut(s)	138, 271
FriOI	GRGCYC	1 cut(s)	464
Fsp4HI	GCNGC	3 cut(s)	326, 674, 701
FspBI	CTAG	2 cut(s)	110, 369
GlaI	GCGC	1 cut(s)	600
GluI	GCNGC	3 cut(s)	326, 674, 701
GsuI	CTGGAG	2 cut(s)	264, 657
HaeIII	GGCC	4 cut(s)	23, 514, 733, 792
HapII	CCGG	2 cut(s)	138, 219
HgaI	GACGC	1 cut(s)	318
HhaI	GCGC	1 cut(s)	601
Hin1II	CATG	3 cut(s)	109, 605, 731
Hin6I	GCGC	1 cut(s)	599
HinP1I	GCGC	1 cut(s)	599
HinfI	GANTC	2 cut(s)	72, 165
HpaII	CCGG	2 cut(s)	138, 219
HphI	GGTGA	3 cut(s)	53, 197, 496
Hpy166II	GTNNAC	2 cut(s)	283, 565
Hpy188I	TCNGA	5 cut(s)	59, 79, 289, 670, 695
Hpy188III	TCNNGA	2 cut(s)	10, 146
Hpy8I	GTNNAC	2 cut(s)	283, 565
HpyAV	CCTTC	3 cut(s)	7, 569, 575
HpyCH4III	ACNGT	2 cut(s)	124, 175
HpyCH4V	TGCA	6 cut(s)	253, 299, 325, 529, 605, 657
HpyF3I	CTNAG	5 cut(s)	78, 288, 386, 509, 677
Hsp92II	CATG	3 cut(s)	109, 605, 731
HspAI	GCGC	1 cut(s)	599
Kzo9I	GATC	4 cut(s)	94, 148, 333, 690
LguI	GCTCTTC	1 cut(s)	55
LmnI	GCTCC	4 cut(s)	47, 239, 302, 670
Lsp1109I	GCAGC	2 cut(s)	337, 712
LweI	GCATC	4 cut(s)	207, 282, 538, 614
MaeI	CTAG	2 cut(s)	110, 369
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	4 cut(s)	96, 150, 335, 692
MboI	GATC	4 cut(s)	94, 148, 333, 690
MboII	GAAGA	1 cut(s)	72
MfeI	CAATTG	1 cut(s)	234
MflI	RGATCY	1 cut(s)	94
MhlI	GDGCHC	2 cut(s)	225, 464
MlsI	TGGCCA	2 cut(s)	23, 792
MluCI	AATT	2 cut(s)	234, 337
MluNI	TGGCCA	2 cut(s)	23, 792
MmeI	TCCRAC	1 cut(s)	530
MnlI	CCTC	6 cut(s)	31, 141, 155, 188, 565, 689
Mox20I	TGGCCA	2 cut(s)	23, 792
Mph1103I	ATGCAT	1 cut(s)	607
MscI	TGGCCA	2 cut(s)	23, 792
MseI	TTAA	2 cut(s)	83, 774
MslI	CAYNNNNRTG	1 cut(s)	182
Msp20I	TGGCCA	2 cut(s)	23, 792
MspI	CCGG	2 cut(s)	138, 219
MspR9I	CCNGG	4 cut(s)	20, 92, 220, 636
MunI	CAATTG	1 cut(s)	234
MvaI	CCWGG	3 cut(s)	20, 92, 636
NciI	CCSGG	1 cut(s)	220
NdeI	CATATG	1 cut(s)	181
NdeII	GATC	4 cut(s)	94, 148, 333, 690
NlaIII	CATG	3 cut(s)	109, 605, 731
NlaIV	GGNNCC	4 cut(s)	89, 96, 633, 672
NmuCI	GTSAC	1 cut(s)	175
NsiI	ATGCAT	1 cut(s)	607
NspI	RCATGY	1 cut(s)	605
NspV	TTCGAA	1 cut(s)	168
OliI	CACNNNNGTG	1 cut(s)	182
PaeI	GCATGC	1 cut(s)	605
PceI	AGGCCT	1 cut(s)	514
PciSI	GCTCTTC	1 cut(s)	55
PfeI	GAWTC	2 cut(s)	72, 165
PflMI	CCANNNNNTGG	1 cut(s)	819
PfoI	TCCNGGA	1 cut(s)	634
PkrI	GCNGC	3 cut(s)	327, 675, 702
PpuMI	RGGWCCY	2 cut(s)	16, 632
Psp124BI	GAGCTC	1 cut(s)	464
Psp5II	RGGWCCY	2 cut(s)	16, 632
Psp6I	CCWGG	3 cut(s)	18, 90, 634
PspGI	CCWGG	3 cut(s)	18, 90, 634
PspN4I	GGNNCC	4 cut(s)	89, 96, 633, 672
PspPI	GGNCC	4 cut(s)	16, 552, 632, 731
PspPPI	RGGWCCY	2 cut(s)	16, 632
PstI	CTGCAG	1 cut(s)	301
PsuI	RGATCY	1 cut(s)	94
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
RseI	CAYNNNNRTG	1 cut(s)	182
SacI	GAGCTC	1 cut(s)	464
SapI	GCTCTTC	1 cut(s)	55
SaqAI	TTAA	2 cut(s)	83, 774
SatI	GCNGC	3 cut(s)	326, 674, 701
Sau3AI	GATC	4 cut(s)	94, 148, 333, 690
Sau96I	GGNCC	4 cut(s)	16, 552, 632, 731
SbfI	CCTGCAGG	1 cut(s)	301
ScrFI	CCNGG	4 cut(s)	20, 92, 220, 636
SdaI	CCTGCAGG	1 cut(s)	301
SduI	GDGCHC	2 cut(s)	225, 464
SfaNI	GCATC	4 cut(s)	207, 282, 538, 614
SfcI	CTRYAG	2 cut(s)	188, 297
SfuI	TTCGAA	1 cut(s)	168
SinI	GGWCC	3 cut(s)	16, 552, 632
SmiMI	CAYNNNNRTG	1 cut(s)	182
SphI	GCATGC	1 cut(s)	605
Sse8387I	CCTGCAGG	1 cut(s)	301
Sse9I	AATT	2 cut(s)	234, 337
SseBI	AGGCCT	1 cut(s)	514
SsiI	CCGC	4 cut(s)	264, 346, 674, 823
SspMI	CTAG	2 cut(s)	110, 369
SstI	GAGCTC	1 cut(s)	464
StuI	AGGCCT	1 cut(s)	514
StyD4I	CCNGG	4 cut(s)	18, 90, 218, 634
TaaI	ACNGT	2 cut(s)	124, 175
TaqI	TCGA	3 cut(s)	168, 430, 762
TasI	AATT	2 cut(s)	234, 337
TauI	GCSGC	1 cut(s)	676
TfiI	GAWTC	2 cut(s)	72, 165
Tru1I	TTAA	2 cut(s)	83, 774
Tru9I	TTAA	2 cut(s)	83, 774
TscAI	CASTG	3 cut(s)	129, 260, 723
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	2 cut(s)	325, 700
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	2 cut(s)	726, 758
TspGWI	ACGGA	1 cut(s)	87
TspRI	CASTG	3 cut(s)	129, 260, 723
Van91I	CCANNNNNTGG	1 cut(s)	819
VpaK11BI	GGWCC	3 cut(s)	16, 552, 632
XagI	CCTNNNNNAGG	1 cut(s)	389
XceI	RCATGY	1 cut(s)	605
XspI	CTAG	2 cut(s)	110, 369
Zsp2I	ATGCAT	1 cut(s)	607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.