bromo domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G44430 AT3G60110 |
| fragaria_vesca | FvH4_3g44130 FvH4_3g44130 FvH4_3g44130 |
| malus_domestica | MD03G1017000.v1.1 MD11G1017600.v1.1 MD11G1018000.v1.1 MD11G1018200.v1.1 |
| prunus_persica | Prupe.6G015400_v2.0.a1 |
| pyrus_communis | pycom03g01460 pycom03g01470 pycom11g01250 pycom11g01320 |
| rosa_chinensis | RchiOBHm_Chr5g0080461 |
| rosa_laevigata | RLG00000036858 |
| rosa_multiflora | Rmu_co8095392.1_g000001 Rmu_sc0020711.1_g000001 Rmu_sc0025164.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00002940 |
| rosa_rugosa | Rorug05G0469000 Rorug05G0469100 |
| rosa_samantha | Rh5AG522700 Rh5BG544300 Rh5CG567900 Rh5DG554600 |
| rosa_wichuraiana | Rw0G023230 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 36 |
| AccB1I | GGYRCC | 1 cut(s) | 893 |
| AccBSI | CCGCTC | 1 cut(s) | 1716 |
| AccI | GTMKAC | 1 cut(s) | 48 |
| AccII | CGCG | 1 cut(s) | 970 |
| AccIII | TCCGGA | 1 cut(s) | 742 |
| AclWI | GGATC | 9 cut(s) | 37, 228, 740, 746, 753, 802, 817, 982, 1087 |
| AcsI | RAATTY | 1 cut(s) | 1567 |
| AcuI | CTGAAG | 1 cut(s) | 1314 |
| AcvI | CACGTG | 1 cut(s) | 156 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 595 |
| AgsI | TTSAA | 6 cut(s) | 401, 476, 481, 1072, 1095, 1663 |
| AjnI | CCWGG | 2 cut(s) | 1002, 1241 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 360, 392 |
| Alw21I | GWGCWC | 3 cut(s) | 245, 432, 588 |
| Alw26I | GTCTC | 6 cut(s) | 687, 1046, 1217, 1314, 1421, 1822 |
| AlwI | GGATC | 9 cut(s) | 37, 228, 740, 746, 753, 802, 817, 982, 1087 |
| Ama87I | CYCGRG | 3 cut(s) | 711, 1474, 1823 |
| Aor13HI | TCCGGA | 1 cut(s) | 742 |
| AoxI | GGCC | 2 cut(s) | 1237, 1788 |
| ApeKI | GCWGC | 3 cut(s) | 776, 1178, 1496 |
| ApoI | RAATTY | 1 cut(s) | 1567 |
| AspLEI | GCGC | 1 cut(s) | 182 |
| AspS9I | GGNCC | 3 cut(s) | 960, 1238, 1334 |
| AsuC2I | CCSGG | 3 cut(s) | 238, 1824, 1825 |
| AsuHPI | GGTGA | 3 cut(s) | 215, 245, 1822 |
| AsuII | TTCGAA | 1 cut(s) | 984 |
| AvaI | CYCGRG | 3 cut(s) | 711, 1474, 1823 |
| AvaII | GGWCC | 2 cut(s) | 960, 1334 |
| AxyI | CCTNAGG | 1 cut(s) | 1867 |
| BaeGI | GKGCMC | 1 cut(s) | 155 |
| BamHI | GGATCC | 1 cut(s) | 745 |
| BanI | GGYRCC | 1 cut(s) | 893 |
| BanII | GRGCYC | 3 cut(s) | 245, 432, 1822 |
| BbrPI | CACGTG | 1 cut(s) | 156 |
| BbsI | GAAGAC | 2 cut(s) | 935, 1138 |
| Bbv12I | GWGCWC | 3 cut(s) | 245, 432, 588 |
| BbvI | GCAGC | 3 cut(s) | 763, 1190, 1483 |
| BccI | CCATC | 3 cut(s) | 563, 972, 1168 |
| BceAI | ACGGC | 4 cut(s) | 167, 354, 789, 916 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 272, 306 |
| BciT130I | CCWGG | 2 cut(s) | 1004, 1243 |
| BciVI | GTATCC | 1 cut(s) | 1879 |
| BcnI | CCSGG | 3 cut(s) | 238, 1824, 1825 |
| BcoDI | GTCTC | 6 cut(s) | 687, 1046, 1217, 1314, 1421, 1822 |
| BfaI | CTAG | 1 cut(s) | 1317 |
| BfmI | CTRYAG | 1 cut(s) | 1118 |
| BfuI | GTATCC | 1 cut(s) | 1879 |
| BglII | AGATCT | 3 cut(s) | 295, 529, 1114 |
| BisI | GCNGC | 4 cut(s) | 609, 777, 1179, 1497 |
| BlpI | GCTNAGC | 1 cut(s) | 426 |
| BlsI | GCNGC | 4 cut(s) | 610, 778, 1180, 1498 |
| Bme1390I | CCNGG | 5 cut(s) | 238, 1004, 1243, 1824, 1825 |
| Bme18I | GGWCC | 2 cut(s) | 960, 1334 |
| BmeT110I | CYCGRG | 3 cut(s) | 711, 1474, 1823 |
| BmgT120I | GGNCC | 3 cut(s) | 960, 1238, 1334 |
| BmiI | GGNNCC | 5 cut(s) | 747, 895, 962, 1001, 1240 |
| BmrFI | CCNGG | 5 cut(s) | 238, 1004, 1243, 1824, 1825 |
| BmsI | GCATC | 4 cut(s) | 757, 1271, 1279, 1868 |
| BpiI | GAAGAC | 2 cut(s) | 935, 1138 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 638, 670, 694, 726 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1011, 1374 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 426 |
| Bpu14I | TTCGAA | 1 cut(s) | 984 |
| BpuEI | CTTGAG | 2 cut(s) | 284, 1191 |
| BpuMI | CCSGG | 3 cut(s) | 238, 1824, 1825 |
| Bsa29I | ATCGAT | 1 cut(s) | 1172 |
| BsaAI | YACGTR | 2 cut(s) | 156, 410 |
| BsaBI | GATNNNNATC | 2 cut(s) | 738, 750 |
| BsaI | GGTCTC | 2 cut(s) | 1217, 1822 |
| BsaJI | CCNNGG | 5 cut(s) | 392, 1241, 1791, 1822, 1823 |
| BsaWI | WCCGGW | 6 cut(s) | 725, 742, 754, 1226, 1265, 1807 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 595 |
| Bse118I | RCCGGY | 2 cut(s) | 896, 990 |
| Bse1I | ACTGG | 1 cut(s) | 1465 |
| Bse21I | CCTNAGG | 1 cut(s) | 1867 |
| Bse3DI | GCAATG | 1 cut(s) | 1452 |
| Bse8I | GATNNNNATC | 2 cut(s) | 738, 750 |
| BseAI | TCCGGA | 1 cut(s) | 742 |
| BseBI | CCWGG | 2 cut(s) | 1004, 1243 |
| BseCI | ATCGAT | 1 cut(s) | 1172 |
| BseDI | CCNNGG | 5 cut(s) | 392, 1241, 1791, 1822, 1823 |
| BseGI | GGATG | 4 cut(s) | 772, 964, 1262, 1294 |
| BseJI | GATNNNNATC | 2 cut(s) | 738, 750 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 595 |
| BseMI | GCAATG | 1 cut(s) | 1452 |
| BseMII | CTCAG | 6 cut(s) | 417, 573, 840, 906, 1179, 1881 |
| BseNI | ACTGG | 1 cut(s) | 1465 |
| BseRI | GAGGAG | 5 cut(s) | 248, 512, 515, 797, 800 |
| BseSI | GKGCMC | 1 cut(s) | 155 |
| BseXI | GCAGC | 3 cut(s) | 763, 1190, 1483 |
| BsgI | GTGCAG | 1 cut(s) | 64 |
| Bsh1236I | CGCG | 1 cut(s) | 970 |
| BshFI | GGCC | 2 cut(s) | 1239, 1790 |
| BshNI | GGYRCC | 1 cut(s) | 893 |
| BshVI | ATCGAT | 1 cut(s) | 1172 |
| BsiHKAI | GWGCWC | 3 cut(s) | 245, 432, 588 |
| BsiHKCI | CYCGRG | 3 cut(s) | 711, 1474, 1823 |
| BslFI | GGGAC | 2 cut(s) | 862, 946 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 595 |
| BsmAI | GTCTC | 6 cut(s) | 687, 1046, 1217, 1314, 1421, 1822 |
| BsmBI | CGTCTC | 2 cut(s) | 687, 1314 |
| BsmFI | GGGAC | 2 cut(s) | 862, 946 |
| BsnI | GGCC | 2 cut(s) | 1239, 1790 |
| Bso31I | GGTCTC | 2 cut(s) | 1217, 1822 |
| BsoBI | CYCGRG | 3 cut(s) | 711, 1474, 1823 |
| Bsp119I | TTCGAA | 1 cut(s) | 984 |
| Bsp1286I | GDGCHC | 5 cut(s) | 155, 245, 432, 588, 1822 |
| Bsp13I | TCCGGA | 1 cut(s) | 742 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 426 |
| BspANI | GGCC | 2 cut(s) | 1239, 1790 |
| BspCNI | CTCAG | 6 cut(s) | 418, 574, 839, 907, 1178, 1880 |
| BspDI | ATCGAT | 1 cut(s) | 1172 |
| BspEI | TCCGGA | 1 cut(s) | 742 |
| BspFNI | CGCG | 1 cut(s) | 970 |
| BspLI | GGNNCC | 5 cut(s) | 747, 895, 962, 1001, 1240 |
| BspPI | GGATC | 9 cut(s) | 37, 228, 740, 746, 753, 802, 817, 982, 1087 |
| BspQI | GCTCTTC | 2 cut(s) | 125, 156 |
| BspT104I | TTCGAA | 1 cut(s) | 984 |
| BspT107I | GGYRCC | 1 cut(s) | 893 |
| BspTNI | GGTCTC | 2 cut(s) | 1217, 1822 |
| BsrBI | CCGCTC | 1 cut(s) | 1716 |
| BsrDI | GCAATG | 1 cut(s) | 1452 |
| BsrFI | RCCGGY | 2 cut(s) | 896, 990 |
| BsrI | ACTGG | 1 cut(s) | 1465 |
| BssAI | RCCGGY | 2 cut(s) | 896, 990 |
| BssECI | CCNNGG | 5 cut(s) | 392, 1241, 1791, 1822, 1823 |
| Bst2UI | CCWGG | 2 cut(s) | 1004, 1243 |
| Bst4CI | ACNGT | 3 cut(s) | 346, 590, 1624 |
| BstBAI | YACGTR | 2 cut(s) | 156, 410 |
| BstBI | TTCGAA | 1 cut(s) | 984 |
| BstC8I | GCNNGC | 4 cut(s) | 178, 898, 992, 1237 |
| BstDSI | CCRYGG | 1 cut(s) | 392 |
| BstF5I | GGATG | 4 cut(s) | 772, 964, 1262, 1294 |
| BstFNI | CGCG | 1 cut(s) | 970 |
| BstHHI | GCGC | 1 cut(s) | 182 |
| BstMAI | GTCTC | 6 cut(s) | 687, 1046, 1217, 1314, 1421, 1822 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 403, 605, 776, 1505 |
| BstNI | CCWGG | 2 cut(s) | 1004, 1243 |
| BstNSI | RCATGY | 1 cut(s) | 180 |
| BstSCI | CCNGG | 5 cut(s) | 236, 1002, 1241, 1822, 1823 |
| BstSFI | CTRYAG | 1 cut(s) | 1118 |
| BstSLI | GKGCMC | 1 cut(s) | 155 |
| BstSNI | TACGTA | 1 cut(s) | 410 |
| BstUI | CGCG | 1 cut(s) | 970 |
| BstV1I | GCAGC | 3 cut(s) | 763, 1190, 1483 |
| BstV2I | GAAGAC | 2 cut(s) | 935, 1138 |
| BstX2I | RGATCY | 7 cut(s) | 29, 295, 529, 745, 974, 1079, 1114 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 971 |
| BstYI | RGATCY | 7 cut(s) | 29, 295, 529, 745, 974, 1079, 1114 |
| Bsu15I | ATCGAT | 1 cut(s) | 1172 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1867 |
| BsuI | GTATCC | 1 cut(s) | 1879 |
| BsuRI | GGCC | 2 cut(s) | 1239, 1790 |
| BsuTUI | ATCGAT | 1 cut(s) | 1172 |
| BtgI | CCRYGG | 1 cut(s) | 392 |
| BtsCI | GGATG | 4 cut(s) | 772, 964, 1262, 1294 |
| BtsI | GCAGTG | 1 cut(s) | 1777 |
| BtsIMutI | CAGTG | 2 cut(s) | 81, 1777 |
| Cac8I | GCNNGC | 4 cut(s) | 178, 898, 992, 1237 |
| CfoI | GCGC | 1 cut(s) | 182 |
| Cfr10I | RCCGGY | 2 cut(s) | 896, 990 |
| Cfr13I | GGNCC | 3 cut(s) | 960, 1238, 1334 |
| Cfr9I | CCCGGG | 1 cut(s) | 1823 |
| ClaI | ATCGAT | 1 cut(s) | 1172 |
| CseI | GACGC | 1 cut(s) | 293 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1473, 1508 |
| CviAII | CATG | 4 cut(s) | 40, 147, 177, 1027 |
| EciI | GGCGGA | 1 cut(s) | 626 |
| Ecl136II | GAGCTC | 2 cut(s) | 243, 430 |
| Eco105I | TACGTA | 1 cut(s) | 410 |
| Eco24I | GRGCYC | 3 cut(s) | 245, 432, 1822 |
| Eco31I | GGTCTC | 2 cut(s) | 1217, 1822 |
| Eco47I | GGWCC | 2 cut(s) | 960, 1334 |
| Eco53kI | GAGCTC | 2 cut(s) | 243, 430 |
| Eco57I | CTGAAG | 1 cut(s) | 1314 |
| Eco72I | CACGTG | 1 cut(s) | 156 |
| Eco81I | CCTNAGG | 1 cut(s) | 1867 |
| Eco88I | CYCGRG | 3 cut(s) | 711, 1474, 1823 |
| EcoICRI | GAGCTC | 2 cut(s) | 243, 430 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1334 |
| EcoRII | CCWGG | 2 cut(s) | 1002, 1241 |
| EcoT38I | GRGCYC | 3 cut(s) | 245, 432, 1822 |
| Esp3I | CGTCTC | 2 cut(s) | 687, 1314 |
| FaeI | CATG | 4 cut(s) | 43, 150, 180, 1030 |
| FaiI | YATR | 9 cut(s) | 36, 41, 75, 148, 178, 453, 1028, 1086, 1271 |
| FaqI | GGGAC | 2 cut(s) | 862, 946 |
| FatI | CATG | 4 cut(s) | 39, 146, 176, 1026 |
| FblI | GTMKAC | 1 cut(s) | 48 |
| Fnu4HI | GCNGC | 4 cut(s) | 609, 777, 1179, 1497 |
| FokI | GGATG | 4 cut(s) | 779, 951, 1249, 1301 |
| FriOI | GRGCYC | 3 cut(s) | 245, 432, 1822 |
| Fsp4HI | GCNGC | 4 cut(s) | 609, 777, 1179, 1497 |
| FspBI | CTAG | 1 cut(s) | 1317 |
| GlaI | GCGC | 1 cut(s) | 181 |
| GluI | GCNGC | 4 cut(s) | 609, 777, 1179, 1497 |
| HaeIII | GGCC | 2 cut(s) | 1239, 1790 |
| HgaI | GACGC | 1 cut(s) | 293 |
| HhaI | GCGC | 1 cut(s) | 182 |
| Hin1II | CATG | 4 cut(s) | 43, 150, 180, 1030 |
| Hin6I | GCGC | 1 cut(s) | 180 |
| HinP1I | GCGC | 1 cut(s) | 180 |
| HincII | GTYRAC | 2 cut(s) | 49, 760 |
| HindII | GTYRAC | 2 cut(s) | 49, 760 |
| HindIII | AAGCTT | 1 cut(s) | 1396 |
| HpaI | GTTAAC | 1 cut(s) | 760 |
| HphI | GGTGA | 3 cut(s) | 215, 245, 1822 |
| Hpy166II | GTNNAC | 3 cut(s) | 49, 760, 1592 |
| Hpy8I | GTNNAC | 3 cut(s) | 49, 760, 1592 |
| Hpy99I | CGWCG | 8 cut(s) | 50, 53, 221, 309, 346, 438, 775, 1576 |
| HpyAV | CCTTC | 7 cut(s) | 425, 785, 873, 1395, 1473, 1780, 1897 |
| HpyCH4III | ACNGT | 3 cut(s) | 346, 590, 1624 |
| HpyCH4IV | ACGT | 3 cut(s) | 45, 155, 409 |
| HpyCH4V | TGCA | 2 cut(s) | 81, 1859 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 403, 605, 776, 1505 |
| HpySE526I | ACGT | 3 cut(s) | 45, 155, 409 |
| Hsp92II | CATG | 4 cut(s) | 43, 150, 180, 1030 |
| HspAI | GCGC | 1 cut(s) | 180 |
| Kpn2I | TCCGGA | 1 cut(s) | 742 |
| KroI | GCCGGC | 2 cut(s) | 896, 990 |
| KroNI | GCCGGC | 2 cut(s) | 898, 992 |
| KspAI | GTTAAC | 1 cut(s) | 760 |
| LguI | GCTCTTC | 2 cut(s) | 125, 156 |
| LmnI | GCTCC | 3 cut(s) | 240, 435, 999 |
| Lsp1109I | GCAGC | 3 cut(s) | 763, 1190, 1483 |
| LweI | GCATC | 4 cut(s) | 757, 1271, 1279, 1868 |
| MaeI | CTAG | 1 cut(s) | 1317 |
| MaeII | ACGT | 3 cut(s) | 45, 155, 409 |
| MaeIII | GTNAC | 3 cut(s) | 334, 410, 821 |
| MbiI | CCGCTC | 1 cut(s) | 1716 |
| MfeI | CAATTG | 2 cut(s) | 476, 1140 |
| MflI | RGATCY | 7 cut(s) | 29, 295, 529, 745, 974, 1079, 1114 |
| MhlI | GDGCHC | 5 cut(s) | 155, 245, 432, 588, 1822 |
| MluCI | AATT | 4 cut(s) | 476, 491, 1140, 1567 |
| MlyI | GAGTC | 6 cut(s) | 656, 712, 829, 851, 1298, 1565 |
| MmeI | TCCRAC | 2 cut(s) | 493, 675 |
| MroI | TCCGGA | 1 cut(s) | 742 |
| MroNI | GCCGGC | 2 cut(s) | 896, 990 |
| MseI | TTAA | 7 cut(s) | 186, 486, 759, 1032, 1247, 1670, 1728 |
| MslI | CAYNNNNRTG | 2 cut(s) | 145, 969 |
| MspA1I | CMGCKG | 1 cut(s) | 608 |
| MspR9I | CCNGG | 5 cut(s) | 238, 1004, 1243, 1824, 1825 |
| MunI | CAATTG | 2 cut(s) | 476, 1140 |
| MvaI | CCWGG | 2 cut(s) | 1004, 1243 |
| MvnI | CGCG | 1 cut(s) | 970 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 403, 605, 776, 1505 |
| NaeI | GCCGGC | 2 cut(s) | 898, 992 |
| NciI | CCSGG | 3 cut(s) | 238, 1824, 1825 |
| NgoMIV | GCCGGC | 2 cut(s) | 896, 990 |
| NlaIII | CATG | 4 cut(s) | 43, 150, 180, 1030 |
| NlaIV | GGNNCC | 5 cut(s) | 747, 895, 962, 1001, 1240 |
| NmeAIII | GCCGAG | 1 cut(s) | 1816 |
| NmuCI | GTSAC | 2 cut(s) | 334, 821 |
| NspI | RCATGY | 1 cut(s) | 180 |
| NspV | TTCGAA | 1 cut(s) | 984 |
| PaeI | GCATGC | 1 cut(s) | 180 |
| PaeR7I | CTCGAG | 2 cut(s) | 711, 1474 |
| PciSI | GCTCTTC | 2 cut(s) | 125, 156 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 415, 837 |
| PdiI | GCCGGC | 2 cut(s) | 898, 992 |
| PfeI | GAWTC | 9 cut(s) | 212, 578, 617, 722, 739, 955, 1088, 1169, 1929 |
| PflFI | GACNNNGTC | 1 cut(s) | 1555 |
| PfoI | TCCNGGA | 1 cut(s) | 236 |
| PkrI | GCNGC | 4 cut(s) | 610, 778, 1180, 1498 |
| PleI | GAGTC | 6 cut(s) | 655, 711, 828, 850, 1298, 1564 |
| PmaCI | CACGTG | 1 cut(s) | 156 |
| PmlI | CACGTG | 1 cut(s) | 156 |
| PpsI | GAGTC | 6 cut(s) | 655, 711, 828, 850, 1298, 1564 |
| Ppu21I | YACGTR | 2 cut(s) | 156, 410 |
| PpuMI | RGGWCCY | 1 cut(s) | 1334 |
| PsiI | TTATAA | 1 cut(s) | 36 |
| Psp124BI | GAGCTC | 2 cut(s) | 245, 432 |
| Psp5II | RGGWCCY | 1 cut(s) | 1334 |
| Psp6I | CCWGG | 2 cut(s) | 1002, 1241 |
| PspCI | CACGTG | 1 cut(s) | 156 |
| PspGI | CCWGG | 2 cut(s) | 1002, 1241 |
| PspN4I | GGNNCC | 5 cut(s) | 747, 895, 962, 1001, 1240 |
| PspPI | GGNCC | 3 cut(s) | 960, 1238, 1334 |
| PspPPI | RGGWCCY | 1 cut(s) | 1334 |
| PsuI | RGATCY | 7 cut(s) | 29, 295, 529, 745, 974, 1079, 1114 |
| PsyI | GACNNNGTC | 1 cut(s) | 1555 |
| RseI | CAYNNNNRTG | 2 cut(s) | 145, 969 |
| SacI | GAGCTC | 2 cut(s) | 245, 432 |
| SalI | GTCGAC | 1 cut(s) | 47 |
| SapI | GCTCTTC | 2 cut(s) | 125, 156 |
| SaqAI | TTAA | 7 cut(s) | 186, 486, 759, 1032, 1247, 1670, 1728 |
| SatI | GCNGC | 4 cut(s) | 609, 777, 1179, 1497 |
| Sau96I | GGNCC | 3 cut(s) | 960, 1238, 1334 |
| SchI | GAGTC | 6 cut(s) | 656, 712, 829, 851, 1298, 1565 |
| ScrFI | CCNGG | 5 cut(s) | 238, 1004, 1243, 1824, 1825 |
| SduI | GDGCHC | 5 cut(s) | 155, 245, 432, 588, 1822 |
| SfaNI | GCATC | 4 cut(s) | 757, 1271, 1279, 1868 |
| SfcI | CTRYAG | 1 cut(s) | 1118 |
| Sfr274I | CTCGAG | 2 cut(s) | 711, 1474 |
| SfuI | TTCGAA | 1 cut(s) | 984 |
| SgrDI | CGTCGACG | 1 cut(s) | 47 |
| SinI | GGWCC | 2 cut(s) | 960, 1334 |
| SlaI | CTCGAG | 2 cut(s) | 711, 1474 |
| SmaI | CCCGGG | 1 cut(s) | 1825 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 145, 969 |
| SmlI | CTYRAG | 4 cut(s) | 299, 711, 1206, 1474 |
| SmoI | CTYRAG | 4 cut(s) | 299, 711, 1206, 1474 |
| SnaBI | TACGTA | 1 cut(s) | 410 |
| SphI | GCATGC | 1 cut(s) | 180 |
| Sse9I | AATT | 4 cut(s) | 476, 491, 1140, 1567 |
| SspMI | CTAG | 1 cut(s) | 1317 |
| SstI | GAGCTC | 2 cut(s) | 245, 432 |
| StyD4I | CCNGG | 5 cut(s) | 236, 1002, 1241, 1822, 1823 |
| TaaI | ACNGT | 3 cut(s) | 346, 590, 1624 |
| TaiI | ACGT | 3 cut(s) | 48, 158, 412 |
| TaqII | GACCGA | 1 cut(s) | 948 |
| TasI | AATT | 4 cut(s) | 476, 491, 1140, 1567 |
| TauI | GCSGC | 1 cut(s) | 611 |
| TfiI | GAWTC | 9 cut(s) | 212, 578, 617, 722, 739, 955, 1088, 1169, 1929 |
| Tru1I | TTAA | 7 cut(s) | 186, 486, 759, 1032, 1247, 1670, 1728 |
| Tru9I | TTAA | 7 cut(s) | 186, 486, 759, 1032, 1247, 1670, 1728 |
| TscAI | CASTG | 2 cut(s) | 88, 1777 |
| TseFI | GTSAC | 2 cut(s) | 334, 821 |
| TseI | GCWGC | 3 cut(s) | 776, 1178, 1496 |
| Tsp45I | GTSAC | 2 cut(s) | 334, 821 |
| TspDTI | ATGAA | 3 cut(s) | 56, 123, 656 |
| TspGWI | ACGGA | 5 cut(s) | 205, 210, 239, 422, 886 |
| TspMI | CCCGGG | 1 cut(s) | 1823 |
| TspRI | CASTG | 2 cut(s) | 88, 1777 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1555 |
| VpaK11BI | GGWCC | 2 cut(s) | 960, 1334 |
| XapI | RAATTY | 1 cut(s) | 1567 |
| XceI | RCATGY | 1 cut(s) | 180 |
| XhoI | CTCGAG | 2 cut(s) | 711, 1474 |
| XmaI | CCCGGG | 1 cut(s) | 1823 |
| XmiI | GTMKAC | 1 cut(s) | 48 |
| XspI | CTAG | 1 cut(s) | 1317 |