Rorug05G0469100
MYB Family

Bromodomain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0006248
Physical Location & Seq
Forward (+)
64590100 .. 64592808
2709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0469100.1

Sequence Viewer

Length: 1224 bp
ATGTTGATGATGAAGAATGTTATAGATACAATAATGAGGAAATCTATTCGAGTGAAGGTGACTCTGACTAACCAATTTCAACAAAGCATCAGCATAAATTCTCAGACTATGCCTTCTGGAGAGATCTCAAAGAAAGGTGCAAAGAGAGCCAAAATACAAGATAAAGTTGCACATGCAGTTGATGTTTCAGCTAGGCAACAAAGGCATAATCCCATGAGAAATTCTGAAGCAAATTTGAGTTCTCCGTCTCATTTGCCAGCTGATGCAGAACCTATTTCAGCTGAAGGTGAAGCTACAGAAAAGCCAAAAATACCACCTAGAGGTAAAGCAAAATTGTTGGACATTAGCAAGAAAAAGAGAAAACGTCCTATCCTAGTTGAATTCAATGAAAGAGGCCAGCCAATTGGGAAAACTGCAGCTCTATTCTCCTCATTTATTGGATGCACAGCAAGAGAGCTAATACCAATGACTGCACCGACCTGGAAAAATCTTTCAGATTTGTTCAAAACTCAGATTTGGGAACACATAACAACAAGTTTCATTGTTGACGAATGCCATAAGAAACAAGTTATTCGAAGGATGATCAAGCTTTGGCGAGATAATAGATCCAATGTGATGAAAGAAGTGGAGAAGCAAGCCGAACTTGTAGGCCTACAACGTGCTGCTACCCTTCTCAAACCTGATAATGTAGAATCTATGAATCAGTGGCTAGATCTTGTCAAAAACAGAACTAGTCCATCATTTAAGGAAATGTCTAAAAAATTCCAAGCAATGCGCGCAGAAAGAACCTTACTCCACAGAACTAGTAGAAAAAGCTTTGCTCGTGTTGAAGAAGAATTAAGGGAACAAAGTGAAATCCCAGATGCAATAACAAGGTCTGATGTTTGGATTCATGCTTACGAAGCAAAGAAGAAGAAGGATTCAGATGTAGTGGAGGATCCAGAAATAGTGAAACAAGTGAAAATGTACAGGGCTGAGCAAGAACCTTCAGAGAAATGTCCTTTGAAGGATGATGCTGTTGCAAAAGTACTCGGTCCTGATCCACGAGGACGAGTAAGAGGTTTGGGATTTGGAGCAGTCCCTTCAAAGGCAGATTATCAAACCAGTGTTGGAAACAAAGTTGCTAAGTTAGAGAATGCTTTATTTGCTCAATCACAAGATATGCTTGCTCAATCACAAGAGATCGAACGATTGAAAGAGGTGGTTGGAACTATTTTGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain Myb_DNA-binding

Protein Analysis

407

Amino Acids

46.09

Weight (kDa)

9.74

Isoelectric Point (pI)

45.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 234 - 358 7.6e-18 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 777
AclWI GGATC 4 cut(s) 600, 932, 945, 1034
AcsI RAATTY 5 cut(s) 97, 220, 232, 380, 761
AcuI CTGAAG 3 cut(s) 246, 303, 972
AfaI GTAC 2 cut(s) 968, 1029
AfiI CCNNNNNNNGG 2 cut(s) 320, 1087
AgsI TTSAA 8 cut(s) 80, 380, 385, 505, 830, 1006, 1086, 1195
AhlI ACTAGT 2 cut(s) 731, 803
AjnI CCWGG 1 cut(s) 479
AluBI AGCT 8 cut(s) 191, 260, 281, 293, 419, 457, 589, 816
AluI AGCT 8 cut(s) 191, 260, 281, 293, 419, 457, 589, 816
Alw26I GTCTC 1 cut(s) 252
AlwI GGATC 4 cut(s) 600, 932, 945, 1034
AoxI GGCC 2 cut(s) 394, 649
ApeKI GCWGC 2 cut(s) 416, 662
ApoI RAATTY 5 cut(s) 97, 220, 232, 380, 761
AspLEI GCGC 2 cut(s) 777, 779
AspS9I GGNCC 1 cut(s) 1034
AsuHPI GGTGA 2 cut(s) 70, 299
AsuII TTCGAA 1 cut(s) 574
AvaII GGWCC 1 cut(s) 1034
BamHI GGATCC 1 cut(s) 937
BauI CACGAG 2 cut(s) 822, 1044
BbvI GCAGC 2 cut(s) 428, 649
BccI CCATC 1 cut(s) 745
BciT130I CCWGG 1 cut(s) 481
BclI TGATCA 1 cut(s) 582
BcoDI GTCTC 1 cut(s) 252
BcuI ACTAGT 2 cut(s) 731, 803
BfaI CTAG 6 cut(s) 192, 318, 374, 710, 732, 804
BfmI CTRYAG 2 cut(s) 294, 414
BglII AGATCT 2 cut(s) 123, 712
BisI GCNGC 2 cut(s) 417, 663
BlpI GCTNAGC 1 cut(s) 975
BlsI GCNGC 2 cut(s) 418, 664
BmcAI AGTACT 1 cut(s) 1029
Bme1390I CCNGG 1 cut(s) 481
Bme18I GGWCC 1 cut(s) 1034
BmgT120I GGNCC 1 cut(s) 1034
BmiI GGNNCC 1 cut(s) 939
BmrFI CCNGG 1 cut(s) 481
BmsI GCATC 5 cut(s) 96, 253, 431, 853, 1003
BpmI CTGGAG 1 cut(s) 138
Bpu1102I GCTNAGC 1 cut(s) 975
Bpu14I TTCGAA 1 cut(s) 574
Bsc4I CCNNNNNNNGG 2 cut(s) 320, 1087
Bse1I ACTGG 1 cut(s) 1104
Bse3DI GCAATG 1 cut(s) 777
BseBI CCWGG 1 cut(s) 481
BseGI GGATG 3 cut(s) 446, 585, 1015
BseLI CCNNNNNNNGG 2 cut(s) 320, 1087
BseMI GCAATG 1 cut(s) 777
BseMII CTCAG 3 cut(s) 116, 524, 966
BseNI ACTGG 1 cut(s) 1104
BsePI GCGCGC 1 cut(s) 775
BseRI GAGGAG 1 cut(s) 418
BseXI GCAGC 2 cut(s) 428, 649
BsgI GTGCAG 1 cut(s) 456
Bsh1236I CGCG 1 cut(s) 777
BshFI GGCC 2 cut(s) 396, 651
BslFI GGGAC 1 cut(s) 1064
BslI CCNNNNNNNGG 2 cut(s) 320, 1087
BsmAI GTCTC 1 cut(s) 252
BsmBI CGTCTC 1 cut(s) 252
BsmFI GGGAC 1 cut(s) 1064
BsmI GAATGC 2 cut(s) 557, 1141
BsnI GGCC 2 cut(s) 396, 651
Bsp119I TTCGAA 1 cut(s) 574
Bsp1407I TGTACA 1 cut(s) 966
Bsp143I GATC 7 cut(s) 123, 582, 605, 712, 937, 1039, 1182
Bsp1720I GCTNAGC 1 cut(s) 975
BspANI GGCC 2 cut(s) 396, 651
BspCNI CTCAG 3 cut(s) 115, 523, 967
BspFNI CGCG 1 cut(s) 777
BspHI TCATGA 1 cut(s) 1220
BspLI GGNNCC 1 cut(s) 939
BspMAI CTGCAG 1 cut(s) 418
BspPI GGATC 4 cut(s) 600, 932, 945, 1034
BspT104I TTCGAA 1 cut(s) 574
BsrDI GCAATG 1 cut(s) 777
BsrGI TGTACA 1 cut(s) 966
BsrI ACTGG 1 cut(s) 1104
BssHII GCGCGC 1 cut(s) 775
BssMI GATC 7 cut(s) 123, 582, 605, 712, 937, 1039, 1182
BssSI CACGAG 2 cut(s) 822, 1044
Bst2BI CACGAG 2 cut(s) 822, 1044
Bst2UI CCWGG 1 cut(s) 481
BstAUI TGTACA 1 cut(s) 966
BstBI TTCGAA 1 cut(s) 574
BstC8I GCNNGC 5 cut(s) 258, 398, 636, 777, 1167
BstDEI CTNAG 4 cut(s) 102, 510, 975, 1125
BstF5I GGATG 3 cut(s) 446, 585, 1015
BstFNI CGCG 1 cut(s) 777
BstHHI GCGC 2 cut(s) 777, 779
BstKTI GATC 7 cut(s) 126, 585, 608, 715, 940, 1042, 1185
BstMAI GTCTC 1 cut(s) 252
BstMBI GATC 7 cut(s) 123, 582, 605, 712, 937, 1039, 1182
BstMWI GCNNNNNNNGC 5 cut(s) 146, 202, 776, 902, 1145
BstNI CCWGG 1 cut(s) 481
BstNSI RCATGY 1 cut(s) 176
BstSCI CCNGG 1 cut(s) 479
BstSFI CTRYAG 2 cut(s) 294, 414
BstUI CGCG 1 cut(s) 777
BstV1I GCAGC 2 cut(s) 428, 649
BstX2I RGATCY 4 cut(s) 123, 605, 712, 937
BstXI CCANNNNNNTGG 1 cut(s) 404
BstYI RGATCY 4 cut(s) 123, 605, 712, 937
BsuRI GGCC 2 cut(s) 396, 651
BtsCI GGATG 3 cut(s) 446, 585, 1015
BtsIMutI CAGTG 2 cut(s) 710, 1111
Cac8I GCNNGC 5 cut(s) 258, 398, 636, 777, 1167
CciI TCATGA 1 cut(s) 1220
CfoI GCGC 2 cut(s) 777, 779
Cfr13I GGNCC 1 cut(s) 1034
Csp6I GTAC 2 cut(s) 967, 1028
CviAII CATG 4 cut(s) 173, 214, 893, 1221
CviQI GTAC 2 cut(s) 967, 1028
DdeI CTNAG 4 cut(s) 102, 510, 975, 1125
DpnI GATC 7 cut(s) 125, 584, 607, 714, 939, 1041, 1184
DpnII GATC 7 cut(s) 123, 582, 605, 712, 937, 1039, 1182
Eco147I AGGCCT 1 cut(s) 651
Eco47I GGWCC 1 cut(s) 1034
Eco57I CTGAAG 3 cut(s) 246, 303, 972
EcoRI GAATTC 1 cut(s) 380
EcoRII CCWGG 1 cut(s) 479
Esp3I CGTCTC 1 cut(s) 252
FaeI CATG 4 cut(s) 176, 217, 896, 1224
FalI AAGNNNNNCTT 4 cut(s) 627, 659, 1149, 1181
FaqI GGGAC 1 cut(s) 1064
FatI CATG 4 cut(s) 172, 213, 892, 1220
FbaI TGATCA 1 cut(s) 582
Fnu4HI GCNGC 2 cut(s) 417, 663
FokI GGATG 3 cut(s) 453, 592, 1022
Fsp4HI GCNGC 2 cut(s) 417, 663
FspBI CTAG 6 cut(s) 192, 318, 374, 710, 732, 804
GlaI GCGC 2 cut(s) 776, 778
GluI GCNGC 2 cut(s) 417, 663
GsuI CTGGAG 1 cut(s) 138
HaeIII GGCC 2 cut(s) 396, 651
HhaI GCGC 2 cut(s) 777, 779
Hin1II CATG 4 cut(s) 176, 217, 896, 1224
Hin6I GCGC 2 cut(s) 775, 777
HinP1I GCGC 2 cut(s) 775, 777
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HindIII AAGCTT 2 cut(s) 587, 814
HinfI GANTC 5 cut(s) 61, 692, 700, 889, 920
HphI GGTGA 2 cut(s) 70, 299
Hpy166II GTNNAC 1 cut(s) 547
Hpy188I TCNGA 8 cut(s) 66, 105, 226, 496, 513, 880, 925, 991
Hpy188III TCNNGA 4 cut(s) 117, 941, 1037, 1221
Hpy8I GTNNAC 1 cut(s) 547
HpyAV CCTTC 9 cut(s) 49, 123, 278, 570, 680, 910, 996, 1000, 1092
HpyCH4IV ACGT 2 cut(s) 364, 658
HpyCH4V TGCA 9 cut(s) 140, 170, 176, 266, 416, 444, 473, 866, 1022
HpyF10VI GCNNNNNNNGC 5 cut(s) 146, 202, 776, 902, 1145
HpyF3I CTNAG 4 cut(s) 102, 510, 975, 1125
HpySE526I ACGT 2 cut(s) 364, 658
Hsp92II CATG 4 cut(s) 176, 217, 896, 1224
HspAI GCGC 2 cut(s) 775, 777
Ksp22I TGATCA 1 cut(s) 582
Kzo9I GATC 7 cut(s) 123, 582, 605, 712, 937, 1039, 1182
LmnI GCTCC 1 cut(s) 1073
Lsp1109I GCAGC 2 cut(s) 428, 649
LweI GCATC 5 cut(s) 96, 253, 431, 853, 1003
MaeI CTAG 6 cut(s) 192, 318, 374, 710, 732, 804
MaeII ACGT 2 cut(s) 364, 658
MaeIII GTNAC 1 cut(s) 58
MalI GATC 7 cut(s) 125, 584, 607, 714, 939, 1041, 1184
MboI GATC 7 cut(s) 123, 582, 605, 712, 937, 1039, 1182
MboII GAAGA 5 cut(s) 25, 842, 845, 922, 925
MfeI CAATTG 1 cut(s) 402
MflI RGATCY 4 cut(s) 123, 605, 712, 937
MluCI AATT 9 cut(s) 74, 97, 220, 232, 332, 380, 402, 761, 836
MlyI GAGTC 1 cut(s) 55
MmeI TCCRAC 3 cut(s) 318, 1090, 1186
MnlI CCTC 8 cut(s) 30, 314, 386, 439, 928, 1040, 1052, 1192
MseI TTAA 2 cut(s) 744, 839
MspA1I CMGCKG 2 cut(s) 260, 281
MspR9I CCNGG 1 cut(s) 481
MunI CAATTG 1 cut(s) 402
Mva1269I GAATGC 2 cut(s) 557, 1141
MvaI CCWGG 1 cut(s) 481
MvnI CGCG 1 cut(s) 777
MwoI GCNNNNNNNGC 5 cut(s) 146, 202, 776, 902, 1145
NdeII GATC 7 cut(s) 123, 582, 605, 712, 937, 1039, 1182
NlaIII CATG 4 cut(s) 176, 217, 896, 1224
NlaIV GGNNCC 1 cut(s) 939
NmuCI GTSAC 1 cut(s) 58
NspI RCATGY 1 cut(s) 176
NspV TTCGAA 1 cut(s) 574
PagI TCATGA 1 cut(s) 1220
PauI GCGCGC 1 cut(s) 775
PceI AGGCCT 1 cut(s) 651
PctI GAATGC 2 cut(s) 557, 1141
PfeI GAWTC 4 cut(s) 692, 700, 889, 920
PkrI GCNGC 2 cut(s) 418, 664
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
Psp6I CCWGG 1 cut(s) 479
PspGI CCWGG 1 cut(s) 479
PspN4I GGNNCC 1 cut(s) 939
PspPI GGNCC 1 cut(s) 1034
PstI CTGCAG 1 cut(s) 418
PsuI RGATCY 4 cut(s) 123, 605, 712, 937
PteI GCGCGC 1 cut(s) 775
PvuII CAGCTG 2 cut(s) 260, 281
RsaI GTAC 2 cut(s) 968, 1029
RsaNI GTAC 2 cut(s) 967, 1028
SaqAI TTAA 2 cut(s) 744, 839
SatI GCNGC 2 cut(s) 417, 663
Sau3AI GATC 7 cut(s) 123, 582, 605, 712, 937, 1039, 1182
Sau96I GGNCC 1 cut(s) 1034
ScaI AGTACT 1 cut(s) 1029
SchI GAGTC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 481
SfaNI GCATC 5 cut(s) 96, 253, 431, 853, 1003
SfcI CTRYAG 2 cut(s) 294, 414
SfuI TTCGAA 1 cut(s) 574
SinI GGWCC 1 cut(s) 1034
SpeI ACTAGT 2 cut(s) 731, 803
Sse9I AATT 9 cut(s) 74, 97, 220, 232, 332, 380, 402, 761, 836
SseBI AGGCCT 1 cut(s) 651
SspMI CTAG 6 cut(s) 192, 318, 374, 710, 732, 804
StuI AGGCCT 1 cut(s) 651
StyD4I CCNGG 1 cut(s) 479
TaiI ACGT 2 cut(s) 367, 661
TaqI TCGA 3 cut(s) 49, 574, 1185
TaqII GACCGA 1 cut(s) 1022
TasI AATT 9 cut(s) 74, 97, 220, 232, 332, 380, 402, 761, 836
TatI WGTACW 2 cut(s) 966, 1027
TfiI GAWTC 4 cut(s) 692, 700, 889, 920
Tru1I TTAA 2 cut(s) 744, 839
Tru9I TTAA 2 cut(s) 744, 839
TscAI CASTG 2 cut(s) 710, 1111
TseFI GTSAC 1 cut(s) 58
TseI GCWGC 2 cut(s) 416, 662
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 6 cut(s) 26, 402, 529, 632, 713, 881
TspGWI ACGGA 1 cut(s) 234
TspRI CASTG 2 cut(s) 710, 1111
VpaK11BI GGWCC 1 cut(s) 1034
XapI RAATTY 5 cut(s) 97, 220, 232, 380, 761
XceI RCATGY 1 cut(s) 176
XspI CTAG 6 cut(s) 192, 318, 374, 710, 732, 804
ZrmI AGTACT 1 cut(s) 1029
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.