Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig01079

Orthogroup ID

OG0006248

Physical Location & Seq

Genomic Coordinates Forward (+)

52849 .. 56343

Gene Structure 3495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G023230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2097 bp

ATGGCTAGTAGGGAACACGAAACGAGCGCGCAACCGTGGGGCACGTTAGAGGAGCTCTTGCTGGTGTCCGCCGTGAACCGTCACGGCACGAAGCGCTGGGACTCCGTCGCCAAGGAGGTTAAGTCCCGGAGCTCCACGACGACAACGGCGGTGTTCACTGCTCAGAACTGTAGGGACAAGTTCGACGACCTCAAACGCCGCTTCGTCGTCTCGCGGCAAAACGACGCCGAATCGCGAAGCGGCGACGACGACGGGCTGGCGTTTATGGTTGACGAGCTCCGCAGGCTCCGAGTCGAGGAGCTCCGCCGCGAGGTCCGCCGTCGCGACGTTTCGATCGTGTCGTTGGAGTTGAAGGTGAAGAAGATGGAGGAGGACAGAGACCGGAGCTTGAAGGCGGAGCAGCCGGCTCCGGTAAAGGATCTCCATCGCGACGGTGGAGGAGAGCAATCGGAGTTGCCGGAGAAACTGGCCGGAAAACCAAACTCCGGCAGAGACTTCGTGTCCGATTCCTCCGAGCGCGAGAACCGATCCTTCAACGAGTCCAATTCCACAAGCCAGAGAAGCGAGGCGAAAGCAAACGGCGTCGTGGAGAAAAAAAGGGATGCGGACGCGGAGCCCGGCCCGGAGAGGAACCAACCAGATCCGGTCCAGACCGAAACCCGATCCGAACCGGCCTCCGCCAACGGTAAAGTGATCGACGACGACGTGGACGATAAAAACGATCGCCAAGGCGGAGGAGGAGCAGAGCCGACAACGACGGGTCGACCCGGCGAGTCGAACGAGTTGTCGGGGTCGAAACGGGTGGTGGTAAAGGAAGTGAGGAAGCAGAACAGCGATGTTCAAAGCTCGGCTAGCTTGACGAGGAGGAGGAAACGACGTCGTAAAGGTGGCGATAGTAGCAGCGGCGAAGAGCCCGAGGGTGGTGAGGAAGTTTCTCCCGCCACCACGAAACGGGTTAAGCTCGTTAAACTTGAGCCGTTGGTCAAGGTCCTCAGGATCGTCCGCTCGCATCGGCTCGGCTCCGTATTCCAGCGCCGGCTTCGGAGCCAGGAATCACAAAGGTACAAGAACCTGATTAGGGAACACGTGGACCTCAAGGTGGTCCAATCCAGGCTCGAGAAAGGGGCCTACAACGACTGCACCCACAAGTTCTTCCGCGACCTCCTCCTCGTATTCAGCAACGCCGTCGTTTTCTTCCGCAAGACCGCGCCGGAACACGTGGCGGCTCTAGAGCTACGCTCGCTGGTGTTGAAGGAAATGAACGACCAGCTACCGAGACCTAGACCCGCCGTGAGCACAGTGAAGCCCAAGCCCAATGTAGAGTCCGATATCACTACTACTACTACTTCCATGAGACCCAGCAAGTCGTCTTCGATCGTTGTGTGCGGTAAACGTGGTTCCATCAATGCATTATCGGAAAACAAGAAAGGAATTGTTAGAAAGGTAGAGGTTGAAGAGAAAGAAGCGAAGGTGAAGGTGAATGGGAAGAAGGTTGAAGACAGTGCACCGGTTAAGGTGGAGGACAAGGGTGTAAGGAAGAGAAGGTCGGCTCAGGAAAGAAGGGGAGAGAGAAGGTCGAGGACGACGACAACGAGTAACAGCAAGAATGTAGAAGCGAAGATAAAGCATGAGTCCGGCGGAAATGAGGTGAGTTTGCGTGATGGTTTGGAGGCGGTGAAGACGGAGAAGAAAGAAGACGTGAAGAAGAAGCAAGGTGCGGCGAGCTTTTTGAAGAGAATGAAGCAGAATGGTAGGAGAGGAGTTGGACGGGGAAAGAACCCTTCAGATGTTTCAGAGGATGAGAGTAAGGATAGTATGGTGGACGAAGAGGAGGAGGAGGAGGAGGAAGAAGAAAAGAAGAAGAGGACAGGGAGGAAGAAAACGGAGGTGGAGAGGAAAGTGAGGGTGACTCGCAGCTCTAATGGAAGGCGAGGGGGAAGAGGTCAGGAAAGCGGTGGGAGGGGGAAGAGAGGGGTCGGGAGGCCGCCTAAGAAAACAGAGACGGCGGCGGCTGGAAGCGGAAAACGGGGGAGAGACAATGGCGAGGCGGATCAGGTGGGGAGTGCAGGGAGGCCGAGGAAACGGACAAGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain Myb_DNA-binding

Protein Analysis

698

Amino Acids

77.99

Weight (kDa)

9.98

Isoelectric Point (pI)

64.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	11 - 45	2.8e-06	Myb-like DNA-binding domain
Bromodomain	PF00439	330 - 410	1.3e-08	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44430 AT3G60110
fragaria_vesca	FvH4_3g44130 FvH4_3g44130 FvH4_3g44130
malus_domestica	MD03G1017000.v1.1 MD11G1017600.v1.1 MD11G1018000.v1.1 MD11G1018200.v1.1
prunus_persica	Prupe.6G015400_v2.0.a1
pyrus_communis	pycom03g01460 pycom03g01470 pycom11g01250 pycom11g01320
rosa_chinensis	RchiOBHm_Chr5g0080461
rosa_laevigata	RLG00000036858
rosa_multiflora	Rmu_co8095392.1_g000001 Rmu_sc0020711.1_g000001 Rmu_sc0025164.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002940
rosa_rugosa	Rorug05G0469000 Rorug05G0469100
rosa_samantha	Rh5AG522700 Rh5BG544300 Rh5CG567900 Rh5DG554600
rosa_wichuraiana	Rw0G023230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	880
AccBSI	CCGCTC	1 cut(s)	1005
AccI	GTMKAC	1 cut(s)	763
AclWI	GGATC	6 cut(s)	426, 522, 635, 657, 1004, 2058
AcoI	YGGCCR	1 cut(s)	468
AcuI	CTGAAG	1 cut(s)	1767
AcvI	CACGTG	2 cut(s)	1087, 1219
AcyI	GRCGYC	3 cut(s)	225, 582, 877
AfaI	GTAC	1 cut(s)	1064
AfeI	AGCGCT	1 cut(s)	95
AfiI	CCNNNNNNNGG	7 cut(s)	295, 310, 485, 920, 951, 1078, 1099
AflIII	ACRYGT	2 cut(s)	1084, 1216
AgeI	ACCGGT	1 cut(s)	1507
AgsI	TTSAA	8 cut(s)	352, 391, 535, 842, 1252, 1454, 1496, 1732
AhdI	GACNNNNNGTC	1 cut(s)	499
AjiI	CACGTC	2 cut(s)	706, 1699
AjnI	CCWGG	2 cut(s)	1047, 1109
Alw21I	GWGCWC	6 cut(s)	57, 134, 279, 303, 1298, 1507
Alw26I	GTCTC	7 cut(s)	214, 372, 486, 1270, 1348, 1994, 2028
Alw44I	GTGCAC	1 cut(s)	1503
AlwI	GGATC	6 cut(s)	426, 522, 635, 657, 1004, 2058
Ama87I	CYCGRG	2 cut(s)	914, 1115
Aor51HI	AGCGCT	1 cut(s)	95
AoxI	GGCC	6 cut(s)	468, 619, 672, 1125, 1982, 2072
ApaLI	GTGCAC	1 cut(s)	1503
ApeKI	GCWGC	3 cut(s)	400, 900, 1914
ArsI	GACNNNNNNTTYG	2 cut(s)	770, 802
AsiGI	ACCGGT	1 cut(s)	1507
AspLEI	GCGC	6 cut(s)	29, 31, 96, 519, 1035, 1210
AspS9I	GGNCC	7 cut(s)	313, 620, 646, 988, 1090, 1102, 1125
AsuC2I	CCSGG	4 cut(s)	127, 618, 623, 768
AsuHPI	GGTGA	7 cut(s)	367, 935, 1483, 1489, 1660, 1687, 1918
AsuNHI	GCTAGC	1 cut(s)	851
AvaI	CYCGRG	2 cut(s)	914, 1115
AvaII	GGWCC	5 cut(s)	313, 646, 988, 1090, 1102
AxyI	CCTNAGG	1 cut(s)	992
BaeGI	GKGCMC	2 cut(s)	44, 1507
BanII	GRGCYC	6 cut(s)	57, 134, 279, 303, 618, 915
BbrPI	CACGTG	2 cut(s)	1087, 1219
BbsI	GAAGAC	4 cut(s)	1362, 1503, 1685, 1701
Bbv12I	GWGCWC	6 cut(s)	57, 134, 279, 303, 1298, 1507
BbvI	GCAGC	3 cut(s)	412, 912, 1926
BccI	CCATC	4 cut(s)	358, 432, 1409, 1655
BceAI	ACGGC	9 cut(s)	56, 100, 162, 303, 595, 961, 1169, 1274, 2019
BcgI	CGANNNNNNTGC	4 cut(s)	478, 512, 1168, 1202
BciT130I	CCWGG	2 cut(s)	1049, 1111
BcnI	CCSGG	4 cut(s)	127, 618, 623, 768
BcoDI	GTCTC	7 cut(s)	214, 372, 486, 1270, 1348, 1994, 2028
BfaI	CTAG	4 cut(s)	6, 852, 1229, 1281
BfmI	CTRYAG	1 cut(s)	169
BfoI	RGCGCY	2 cut(s)	97, 1036
Bme1390I	CCNGG	6 cut(s)	127, 618, 623, 768, 1049, 1111
Bme18I	GGWCC	5 cut(s)	313, 646, 988, 1090, 1102
BmeRI	GACNNNNNGTC	1 cut(s)	499
BmeT110I	CYCGRG	2 cut(s)	914, 1115
BmgBI	CACGTC	2 cut(s)	706, 1699
BmgT120I	GGNCC	7 cut(s)	313, 620, 646, 988, 1090, 1102, 1125
BmiI	GGNNCC	8 cut(s)	287, 408, 615, 632, 1021, 1046, 1126, 1399
BmrFI	CCNGG	6 cut(s)	127, 618, 623, 768, 1049, 1111
BmsI	GCATC	2 cut(s)	592, 1018
BmtI	GCTAGC	1 cut(s)	855
BpiI	GAAGAC	4 cut(s)	1362, 1503, 1685, 1701
BplI	GAGNNNNNCTC	4 cut(s)	1223, 1255, 1894, 1926
Bpu10I	CCTNAGC	1 cut(s)	1551
BpuEI	CTTGAG	2 cut(s)	992, 1079
BpuMI	CCSGG	4 cut(s)	127, 618, 623, 768
BsaAI	YACGTR	2 cut(s)	1087, 1219
BsaBI	GATNNNNATC	1 cut(s)	423
BsaHI	GRCGYC	3 cut(s)	225, 582, 877
BsaI	GGTCTC	3 cut(s)	372, 1270, 1348
BsaJI	CCNNGG	5 cut(s)	35, 111, 727, 915, 2075
BsaWI	WCCGGW	4 cut(s)	381, 409, 643, 1507
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	7 cut(s)	295, 310, 485, 920, 951, 1078, 1099
Bse118I	RCCGGY	4 cut(s)	403, 670, 1035, 1507
Bse1I	ACTGG	1 cut(s)	471
Bse21I	CCTNAGG	1 cut(s)	992
Bse8I	GATNNNNATC	1 cut(s)	423
BseBI	CCWGG	2 cut(s)	1049, 1111
BseDI	CCNNGG	5 cut(s)	35, 111, 727, 915, 2075
BseGI	GGATG	2 cut(s)	607, 1804
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	7 cut(s)	295, 310, 485, 920, 951, 1078, 1099
BseMII	CTCAG	3 cut(s)	176, 1006, 1565
BseNI	ACTGG	1 cut(s)	471
BsePI	GCGCGC	1 cut(s)	27
BseSI	GKGCMC	2 cut(s)	44, 1507
BseXI	GCAGC	3 cut(s)	412, 912, 1926
BseYI	CCCAGC	2 cut(s)	96, 1358
BsgI	GTGCAG	2 cut(s)	1123, 2085
Bsh1285I	CGRYCG	3 cut(s)	336, 724, 1377
BshFI	GGCC	6 cut(s)	470, 621, 674, 1127, 1984, 2074
BshTI	ACCGGT	1 cut(s)	1507
BsiEI	CGRYCG	3 cut(s)	336, 724, 1377
BsiHKAI	GWGCWC	6 cut(s)	57, 134, 279, 303, 1298, 1507
BsiHKCI	CYCGRG	2 cut(s)	914, 1115
BslFI	GGGAC	3 cut(s)	109, 113, 188
BslI	CCNNNNNNNGG	7 cut(s)	295, 310, 485, 920, 951, 1078, 1099
BsmAI	GTCTC	7 cut(s)	214, 372, 486, 1270, 1348, 1994, 2028
BsmBI	CGTCTC	2 cut(s)	214, 1994
BsmFI	GGGAC	3 cut(s)	109, 113, 188
BsnI	GGCC	6 cut(s)	470, 621, 674, 1127, 1984, 2074
Bso31I	GGTCTC	3 cut(s)	372, 1270, 1348
BsoBI	CYCGRG	2 cut(s)	914, 1115
Bsp1286I	GDGCHC	9 cut(s)	44, 57, 134, 279, 303, 618, 915, 1298, 1507
Bsp68I	TCGCGA	3 cut(s)	235, 324, 429
BspANI	GGCC	6 cut(s)	470, 621, 674, 1127, 1984, 2074
BspCNI	CTCAG	3 cut(s)	175, 1005, 1564
BspLI	GGNNCC	8 cut(s)	287, 408, 615, 632, 1021, 1046, 1126, 1399
BspOI	GCTAGC	1 cut(s)	855
BspPI	GGATC	6 cut(s)	426, 522, 635, 657, 1004, 2058
BspQI	GCTCTTC	1 cut(s)	903
BspTNI	GGTCTC	3 cut(s)	372, 1270, 1348
BsrBI	CCGCTC	1 cut(s)	1005
BsrFI	RCCGGY	4 cut(s)	403, 670, 1035, 1507
BsrI	ACTGG	1 cut(s)	471
BssAI	RCCGGY	4 cut(s)	403, 670, 1035, 1507
BssECI	CCNNGG	5 cut(s)	35, 111, 727, 915, 2075
BssHII	GCGCGC	1 cut(s)	27
BssNI	GRCGYC	3 cut(s)	225, 582, 877
BssT1I	CCWWGG	2 cut(s)	111, 727
Bst2UI	CCWGG	2 cut(s)	1049, 1111
Bst4CI	ACNGT	7 cut(s)	36, 80, 170, 434, 686, 1300, 1502
Bst6I	CTCTTC	8 cut(s)	903, 1449, 1532, 1727, 1821, 1856, 1933, 1961
BstACI	GRCGYC	3 cut(s)	225, 582, 877
BstBAI	YACGTR	2 cut(s)	1087, 1219
BstC8I	GCNNGC	9 cut(s)	29, 258, 284, 405, 853, 1007, 1037, 1241, 1723
BstDEI	CTNAG	4 cut(s)	162, 992, 1551, 1989
BstDSI	CCRYGG	1 cut(s)	35
BstF5I	GGATG	2 cut(s)	607, 1804
BstH2I	RGCGCY	2 cut(s)	97, 1036
BstHHI	GCGC	6 cut(s)	29, 31, 96, 519, 1035, 1210
BstMAI	GTCTC	7 cut(s)	214, 372, 486, 1270, 1348, 1994, 2028
BstMCI	CGRYCG	3 cut(s)	336, 724, 1377
BstMWI	GCNNNNNNNGC	7 cut(s)	93, 283, 315, 561, 852, 897, 1240
BstNI	CCWGG	2 cut(s)	1049, 1111
BstSCI	CCNGG	6 cut(s)	125, 616, 621, 766, 1047, 1109
BstSFI	CTRYAG	1 cut(s)	169
BstSLI	GKGCMC	2 cut(s)	44, 1507
BstV1I	GCAGC	3 cut(s)	412, 912, 1926
BstV2I	GAAGAC	4 cut(s)	1362, 1503, 1685, 1701
BstX2I	RGATCY	2 cut(s)	418, 640
BstYI	RGATCY	2 cut(s)	418, 640
Bsu36I	CCTNAGG	1 cut(s)	992
BsuRI	GGCC	6 cut(s)	470, 621, 674, 1127, 1984, 2074
BtgI	CCRYGG	1 cut(s)	35
BtgZI	GCGATG	2 cut(s)	410, 849
BtrI	CACGTC	2 cut(s)	706, 1699
BtsCI	GGATG	2 cut(s)	607, 1804
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	3 cut(s)	156, 1305, 1507
BtuMI	TCGCGA	3 cut(s)	235, 324, 429
Cac8I	GCNNGC	9 cut(s)	29, 258, 284, 405, 853, 1007, 1037, 1241, 1723
CfoI	GCGC	6 cut(s)	29, 31, 96, 519, 1035, 1210
Cfr10I	RCCGGY	4 cut(s)	403, 670, 1035, 1507
Cfr13I	GGNCC	7 cut(s)	313, 620, 646, 988, 1090, 1102, 1125
CseI	GACGC	3 cut(s)	233, 571, 617
Csp6I	GTAC	1 cut(s)	1063
CspAI	ACCGGT	1 cut(s)	1507
CviAII	CATG	2 cut(s)	1351, 1628
CviQI	GTAC	1 cut(s)	1063
DdeI	CTNAG	4 cut(s)	162, 992, 1551, 1989
DriI	GACNNNNNGTC	1 cut(s)	499
EaeI	YGGCCR	1 cut(s)	468
Eam1104I	CTCTTC	8 cut(s)	903, 1449, 1532, 1727, 1821, 1856, 1933, 1961
Eam1105I	GACNNNNNGTC	1 cut(s)	499
EarI	CTCTTC	8 cut(s)	903, 1449, 1532, 1727, 1821, 1856, 1933, 1961
EciI	GGCGGA	8 cut(s)	58, 293, 305, 410, 667, 747, 1653, 2063
Ecl136II	GAGCTC	4 cut(s)	55, 132, 277, 301
Eco130I	CCWWGG	2 cut(s)	111, 727
Eco24I	GRGCYC	6 cut(s)	57, 134, 279, 303, 618, 915
Eco31I	GGTCTC	3 cut(s)	372, 1270, 1348
Eco32I	GATATC	1 cut(s)	1330
Eco47I	GGWCC	5 cut(s)	313, 646, 988, 1090, 1102
Eco47III	AGCGCT	1 cut(s)	95
Eco53kI	GAGCTC	4 cut(s)	55, 132, 277, 301
Eco57I	CTGAAG	1 cut(s)	1767
Eco72I	CACGTG	2 cut(s)	1087, 1219
Eco81I	CCTNAGG	1 cut(s)	992
Eco88I	CYCGRG	2 cut(s)	914, 1115
EcoICRI	GAGCTC	4 cut(s)	55, 132, 277, 301
EcoO109I	RGGNCCY	2 cut(s)	988, 1125
EcoRII	CCWGG	2 cut(s)	1047, 1109
EcoRV	GATATC	1 cut(s)	1330
EcoT14I	CCWWGG	2 cut(s)	111, 727
EcoT22I	ATGCAT	1 cut(s)	1411
EcoT38I	GRGCYC	6 cut(s)	57, 134, 279, 303, 618, 915
ErhI	CCWWGG	2 cut(s)	111, 727
Esp3I	CGTCTC	2 cut(s)	214, 1994
FaeI	CATG	2 cut(s)	1354, 1631
FaiI	YATR	4 cut(s)	266, 1352, 1629, 1817
FaqI	GGGAC	3 cut(s)	109, 113, 188
FatI	CATG	2 cut(s)	1350, 1627
FauI	CCCGC	2 cut(s)	946, 1294
FblI	GTMKAC	1 cut(s)	763
FokI	GGATG	2 cut(s)	614, 1811
FriOI	GRGCYC	6 cut(s)	57, 134, 279, 303, 618, 915
FspBI	CTAG	4 cut(s)	6, 852, 1229, 1281
GlaI	GCGC	6 cut(s)	28, 30, 95, 518, 1034, 1209
GsaI	CCCAGC	2 cut(s)	100, 1362
HaeII	RGCGCY	2 cut(s)	97, 1036
HaeIII	GGCC	6 cut(s)	470, 621, 674, 1127, 1984, 2074
HgaI	GACGC	3 cut(s)	233, 571, 617
HhaI	GCGC	6 cut(s)	29, 31, 96, 519, 1035, 1210
Hin1I	GRCGYC	3 cut(s)	225, 582, 877
Hin1II	CATG	2 cut(s)	1354, 1631
Hin6I	GCGC	6 cut(s)	27, 29, 94, 517, 1033, 1208
HinP1I	GCGC	6 cut(s)	27, 29, 94, 517, 1033, 1208
HincII	GTYRAC	2 cut(s)	271, 764
HindII	GTYRAC	2 cut(s)	271, 764
HphI	GGTGA	7 cut(s)	367, 935, 1483, 1489, 1660, 1687, 1918
Hpy166II	GTNNAC	9 cut(s)	76, 156, 271, 709, 764, 1090, 1391, 1505, 1822
Hpy8I	GTNNAC	9 cut(s)	76, 156, 271, 709, 764, 1090, 1391, 1505, 1822
HpyCH4III	ACNGT	7 cut(s)	36, 80, 170, 434, 686, 1300, 1502
HpyCH4IV	ACGT	8 cut(s)	44, 327, 705, 877, 1086, 1218, 1393, 1698
HpyCH4V	TGCA	4 cut(s)	1140, 1409, 1505, 2066
HpyF10VI	GCNNNNNNNGC	7 cut(s)	93, 283, 315, 561, 852, 897, 1240
HpyF3I	CTNAG	4 cut(s)	162, 992, 1551, 1989
HpySE526I	ACGT	8 cut(s)	44, 327, 705, 877, 1086, 1218, 1393, 1698
Hsp92I	GRCGYC	3 cut(s)	225, 582, 877
Hsp92II	CATG	2 cut(s)	1354, 1631
HspAI	GCGC	6 cut(s)	27, 29, 94, 517, 1033, 1208
KroI	GCCGGC	2 cut(s)	403, 1035
KroNI	GCCGGC	2 cut(s)	405, 1037
LguI	GCTCTTC	1 cut(s)	903
Lsp1109I	GCAGC	3 cut(s)	412, 912, 1926
LweI	GCATC	2 cut(s)	592, 1018
MaeI	CTAG	4 cut(s)	6, 852, 1229, 1281
MaeII	ACGT	8 cut(s)	44, 327, 705, 877, 1086, 1218, 1393, 1698
MaeIII	GTNAC	3 cut(s)	80, 1595, 1906
MbiI	CCGCTC	1 cut(s)	1005
MflI	RGATCY	2 cut(s)	418, 640
MhlI	GDGCHC	9 cut(s)	44, 57, 134, 279, 303, 618, 915, 1298, 1507
MluCI	AATT	2 cut(s)	544, 1431
MlyI	GAGTC	7 cut(s)	95, 300, 548, 782, 1331, 1640, 1903
MmeI	TCCRAC	2 cut(s)	324, 1744
Mph1103I	ATGCAT	1 cut(s)	1411
MroNI	GCCGGC	2 cut(s)	403, 1035
MseI	TTAA	4 cut(s)	120, 957, 966, 1512
MspA1I	CMGCKG	1 cut(s)	903
MspR9I	CCNGG	6 cut(s)	127, 618, 623, 768, 1049, 1111
MvaI	CCWGG	2 cut(s)	1049, 1111
MwoI	GCNNNNNNNGC	7 cut(s)	93, 283, 315, 561, 852, 897, 1240
NaeI	GCCGGC	2 cut(s)	405, 1037
NciI	CCSGG	4 cut(s)	127, 618, 623, 768
NgoMIV	GCCGGC	2 cut(s)	403, 1035
NheI	GCTAGC	1 cut(s)	851
NlaIII	CATG	2 cut(s)	1354, 1631
NlaIV	GGNNCC	8 cut(s)	287, 408, 615, 632, 1021, 1046, 1126, 1399
NmeAIII	GCCGAG	2 cut(s)	827, 996
NmuCI	GTSAC	2 cut(s)	80, 1906
NruI	TCGCGA	3 cut(s)	235, 324, 429
NsiI	ATGCAT	1 cut(s)	1411
PaeR7I	CTCGAG	1 cut(s)	1115
PauI	GCGCGC	1 cut(s)	27
PciSI	GCTCTTC	1 cut(s)	903
PcsI	WCGNNNNNNNCGW	7 cut(s)	333, 338, 702, 708, 717, 1583, 1589
PdiI	GCCGGC	2 cut(s)	405, 1037
PfeI	GAWTC	3 cut(s)	230, 506, 1052
PflFI	GACNNNGTC	1 cut(s)	104
PfoI	TCCNGGA	1 cut(s)	125
PinAI	ACCGGT	1 cut(s)	1507
Ple19I	CGATCG	3 cut(s)	336, 724, 1377
PleI	GAGTC	7 cut(s)	95, 299, 547, 781, 1330, 1639, 1903
PmaCI	CACGTG	2 cut(s)	1087, 1219
PmlI	CACGTG	2 cut(s)	1087, 1219
PpsI	GAGTC	7 cut(s)	95, 299, 547, 781, 1330, 1639, 1903
Ppu21I	YACGTR	2 cut(s)	1087, 1219
PpuMI	RGGWCCY	1 cut(s)	988
Psp124BI	GAGCTC	4 cut(s)	57, 134, 279, 303
Psp5II	RGGWCCY	1 cut(s)	988
Psp6I	CCWGG	2 cut(s)	1047, 1109
PspCI	CACGTG	2 cut(s)	1087, 1219
PspFI	CCCAGC	2 cut(s)	96, 1358
PspGI	CCWGG	2 cut(s)	1047, 1109
PspN4I	GGNNCC	8 cut(s)	287, 408, 615, 632, 1021, 1046, 1126, 1399
PspPI	GGNCC	7 cut(s)	313, 620, 646, 988, 1090, 1102, 1125
PspPPI	RGGWCCY	1 cut(s)	988
PsrI	GAACNNNNNNTAC	2 cut(s)	1381, 1413
PsuI	RGATCY	2 cut(s)	418, 640
PsyI	GACNNNGTC	1 cut(s)	104
PteI	GCGCGC	1 cut(s)	27
PvuI	CGATCG	3 cut(s)	336, 724, 1377
RruI	TCGCGA	3 cut(s)	235, 324, 429
RsaI	GTAC	1 cut(s)	1064
RsaNI	GTAC	1 cut(s)	1063
SacI	GAGCTC	4 cut(s)	57, 134, 279, 303
SalI	GTCGAC	1 cut(s)	762
SapI	GCTCTTC	1 cut(s)	903
SaqAI	TTAA	4 cut(s)	120, 957, 966, 1512
Sau96I	GGNCC	7 cut(s)	313, 620, 646, 988, 1090, 1102, 1125
SchI	GAGTC	7 cut(s)	95, 300, 548, 782, 1331, 1640, 1903
ScrFI	CCNGG	6 cut(s)	127, 618, 623, 768, 1049, 1111
SduI	GDGCHC	9 cut(s)	44, 57, 134, 279, 303, 618, 915, 1298, 1507
SfaNI	GCATC	2 cut(s)	592, 1018
SfcI	CTRYAG	1 cut(s)	169
Sfr274I	CTCGAG	1 cut(s)	1115
SinI	GGWCC	5 cut(s)	313, 646, 988, 1090, 1102
SlaI	CTCGAG	1 cut(s)	1115
SmlI	CTYRAG	3 cut(s)	971, 1094, 1115
SmoI	CTYRAG	3 cut(s)	971, 1094, 1115
Sse9I	AATT	2 cut(s)	544, 1431
SspMI	CTAG	4 cut(s)	6, 852, 1229, 1281
SstI	GAGCTC	4 cut(s)	57, 134, 279, 303
StyD4I	CCNGG	6 cut(s)	125, 616, 621, 766, 1047, 1109
StyI	CCWWGG	2 cut(s)	111, 727
TaaI	ACNGT	7 cut(s)	36, 80, 170, 434, 686, 1300, 1502
TaiI	ACGT	8 cut(s)	47, 330, 708, 880, 1089, 1221, 1396, 1701
TaqII	GACCGA	1 cut(s)	668
TasI	AATT	2 cut(s)	544, 1431
TfiI	GAWTC	3 cut(s)	230, 506, 1052
Tru1I	TTAA	4 cut(s)	120, 957, 966, 1512
Tru9I	TTAA	4 cut(s)	120, 957, 966, 1512
TscAI	CASTG	3 cut(s)	163, 1305, 1507
TseFI	GTSAC	2 cut(s)	80, 1906
TseI	GCWGC	3 cut(s)	400, 900, 1914
Tsp45I	GTSAC	2 cut(s)	80, 1906
TspDTI	ATGAA	2 cut(s)	1274, 1754
TspGWI	ACGGA	4 cut(s)	94, 1012, 1697, 1898
TspRI	CASTG	3 cut(s)	163, 1305, 1507
Tth111I	GACNNNGTC	1 cut(s)	104
VneI	GTGCAC	1 cut(s)	1503
VpaK11BI	GGWCC	5 cut(s)	313, 646, 988, 1090, 1102
XbaI	TCTAGA	1 cut(s)	1228
XcmI	CCANNNNNNNNNTGG	1 cut(s)	431
XhoI	CTCGAG	1 cut(s)	1115
XmiI	GTMKAC	1 cut(s)	763
XspI	CTAG	4 cut(s)	6, 852, 1229, 1281
ZraI	GACGTC	1 cut(s)	878
Zsp2I	ATGCAT	1 cut(s)	1411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.