Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006248

Physical Location & Seq

Genomic Coordinates Forward (+)

3442445 .. 3446063

Gene Structure 3619 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00002940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2235 bp

ATGGCTAGTAGGGAAAACGAAACGAGCGCGCAACCCTGGGGCACGTTAGAGGAGCTCTTGCTGGTGTCCGCCGTGAACCGTCACGGCATGAAGCGCTGGGACTCCGTCGCCAAGGAGGTTAAGTCCCGGAGCTCCACGACGACAACGGCGGTGTTCACTGCTCAGAACTGTAGGGACAAGTTCGACGACCTCAAACGCCGCTTCGTCGTCTCGCAGCAAAACGACGCCGAATCGCGAAGCGGCGACGACGACGGCCTGGCGTTTTTGGTTGACGAGCTCCGCAGGCTCCGAGTCGAGGAGCTCCGCCGCGAGGTCCGCCGACGCGACGTTTCGATCGTGTCGTTGGAGTTGAAGGTGAAGAAGATGGAGGAGGAGGACCGAGACCGGAGATTGAAGGCGGCGGAGGCGGGGCATCCGGCTCCGGTAAAGGATCTCCATCGCGACAGCGGCGGAGGAGGAGGAGAGCAATCGGAGTTGCCGGAGAGACTCGCCGGAAAACAGAACTCCGGCGGAGACTTCGTGTCCAATTCCTCCGAGCGCGAGAACCGATCCTTCAACGAGTCCAATTCCACAAGCCAGAGAAGCGAGGCGAAAGCAAACGGCGTCGTGGAGAAAAAAACGGATGCGGACGCGGAGCCCGGCCCGGAGAGGAACCAACCAGATCCGGTCCAGACCGAGACCCGATCCGAACCGGCCTCTGCCAACGGTAAAGTGATCGACGATGACGACGTGGACGATAAAAACGATCGCGAAGGAGGAGGAGGAGCAGAGCCGACGACGACGGGTCGACCGGGCGAGTCGAACGAGTTGTCGCTGTCGAAACGGGCGGTGGTAAAGGAAGTGAGGAAGCAGAACAGCGATGTTCAAAGCTCGGCTAGCTTGACCAGGAGGAGGAAACGACGTCGTAAAGGTGGTGATAGTAGCAGCGGCGAAGAACCCGAGGGTGGTGAGGAAGTTTCTCCCGCCACCACGAAACGGGTTAAGCTCGTTAAACTTGAGCCGTTGGTCAAGGTCCTCAGGATCGTCCGCTCGCATCGGCTCGGCTCCGTATTCCAGCGCCGGCTTCGGAGTCAGGAATCACAAAGGTACAAGAACCTGATTAGGGAACACGTGGACCTCAAGGTGGTCCAATCCAGGCTCGAGAAAGGGGCCTATAACGACTGCACCCACAAGTTCTTCCGCGACCTCCTCCTCGTATTCTGCAACGCCGTCGTTTTCTTCCGCAAGACTGCGCCGGAACACGGGGCGGCTCTAGAGCTACGCTCGCTGGTGTTGAAGGAAATGAACGACCAGCTACCGAAACCTAAACCCGCCGTGAGCACGGTGAAGCCCAAGCCCAATGTAGAGTCCGATATCACTACTACTACTACTTCCATGAGACCCAGCAAGTCGTCTTCGATCGTTGTGTGCGGCAAACGTGGTTCCATCAATGCATTATCCGAAAACAAGAAAGGAACTGTTAGAAAGGTGGAGGTTGAAGAGAAAGAAGCGAAGGTGAAGGTGAACGGGAAGAAGGAAGACATTGCTCCGGTTAAGGTTGAGGACAAGGGTGTGAGGAAGAGAAGGTCGACTCAGGAAAGAAGGGGAGAGAGAAGGTCGAGGACGACGATGAGTAACAGCAAGAATGTAGAAGCGAAGACGAAGCATGAGTCCGGCGGAAATGTGCTAAGTTCGCGTGATGGTTTGGAGGCGGTGAAGACGGAGAAGAAAGAAGAGGTGAAGAAGAAGCAAGGCGCGGCGAACTTCTTGAAGAGAATGAAGCAGAATGGTAGGAGCGGAGTTGGGCCGGGTAAGAACTCTTCGGATGTTTCGGAGGATGAGAGTAAGGATAGCATGGTGGATGAAGAAGAGGAGGAGGAGGAGGTGGAGGAAGAGGAGGAAGAAAAGAAGAAGAAGAGGACGGGGAGGAAGAAAACGGACGTGGAGAGGAAAGTGAGGGTGACTCGTAGCTCTAGTGGAAATCGGGGAAGGCGAGGGGGAAGAGGTCAGGAGAGCGGTGGGAGGGGGAAGAGGGGGTCGGGAGGCCGCCTAAGAAACCAGAAACGGCGGCGGCTGGAAGCGGAAAACGGGAAAGAGACAATGGCGAGGCGGATCAGGTGGGGAGTGCAGGGAGGCCGAGGAAACGAACAAGGAGGTGATGTGCCTAATGCTTTAGGATGCTTAGGTTCAGTTGGTTTTAGTTACTTTGGCCCAAAGAAGGCAAAAGAGAATCGGGGTATTACAAGAGGGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain Myb_DNA-binding

Protein Analysis

744

Amino Acids

82.72

Weight (kDa)

9.81

Isoelectric Point (pI)

65.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	11 - 45	3.1e-06	Myb-like DNA-binding domain
Bromodomain	PF00439	338 - 417	2.8e-07	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44430 AT3G60110
fragaria_vesca	FvH4_3g44130 FvH4_3g44130 FvH4_3g44130
malus_domestica	MD03G1017000.v1.1 MD11G1017600.v1.1 MD11G1018000.v1.1 MD11G1018200.v1.1
prunus_persica	Prupe.6G015400_v2.0.a1
pyrus_communis	pycom03g01460 pycom03g01470 pycom11g01250 pycom11g01320
rosa_chinensis	RchiOBHm_Chr5g0080461
rosa_laevigata	RLG00000036858
rosa_multiflora	Rmu_co8095392.1_g000001 Rmu_sc0020711.1_g000001 Rmu_sc0025164.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002940
rosa_rugosa	Rorug05G0469000 Rorug05G0469100
rosa_samantha	Rh5AG522700 Rh5BG544300 Rh5CG567900 Rh5DG554600
rosa_wichuraiana	Rw0G023230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	904
AccBSI	CCGCTC	3 cut(s)	1029, 1776, 1995
AccI	GTMKAC	2 cut(s)	787, 1568
AclWI	GGATC	6 cut(s)	438, 543, 656, 678, 1028, 2099
AcvI	CACGTG	1 cut(s)	1111
AcyI	GRCGYC	3 cut(s)	225, 603, 901
AfaI	GTAC	1 cut(s)	1088
AfeI	AGCGCT	1 cut(s)	95
AfiI	CCNNNNNNNGG	9 cut(s)	295, 310, 891, 944, 975, 1102, 1123, 1241, 2197
AflIII	ACRYGT	1 cut(s)	1108
AgsI	TTSAA	7 cut(s)	352, 394, 556, 866, 1276, 1478, 1750
AhdI	GACNNNNNGTC	2 cut(s)	520, 783
AjiI	CACGTC	2 cut(s)	730, 1921
AjnI	CCWGG	4 cut(s)	35, 255, 884, 1133
Alw21I	GWGCWC	5 cut(s)	57, 134, 279, 303, 1322
Alw26I	GTCTC	7 cut(s)	214, 375, 478, 507, 671, 1372, 2069
AlwI	GGATC	6 cut(s)	438, 543, 656, 678, 1028, 2099
Ama87I	CYCGRG	2 cut(s)	938, 1139
Aor51HI	AGCGCT	1 cut(s)	95
AoxI	GGCC	8 cut(s)	253, 640, 693, 1149, 1784, 2023, 2113, 2188
ApeKI	GCWGC	2 cut(s)	214, 924
ArsI	GACNNNNNNTTYG	4 cut(s)	794, 826, 1634, 1666
AspLEI	GCGC	7 cut(s)	29, 31, 96, 540, 1059, 1234, 1736
AsuC2I	CCSGG	5 cut(s)	127, 639, 644, 792, 1788
AsuNHI	GCTAGC	1 cut(s)	875
AvaI	CYCGRG	2 cut(s)	938, 1139
AvaII	GGWCC	6 cut(s)	313, 376, 667, 1012, 1114, 1126
AxyI	CCTNAGG	1 cut(s)	1016
BaeGI	GKGCMC	1 cut(s)	44
BanII	GRGCYC	5 cut(s)	57, 134, 279, 303, 639
BarI	GAAGNNNNNNTAC	2 cut(s)	1783, 1815
BbrPI	CACGTG	1 cut(s)	1111
BbsI	GAAGAC	4 cut(s)	1386, 1524, 1643, 1703
Bbv12I	GWGCWC	5 cut(s)	57, 134, 279, 303, 1322
BbvI	GCAGC	2 cut(s)	226, 936
BccI	CCATC	4 cut(s)	358, 444, 1433, 1673
BceAI	ACGGC	9 cut(s)	56, 100, 162, 268, 616, 985, 1193, 1298, 2060
BcgI	CGANNNNNNTGC	2 cut(s)	1192, 1226
BciT130I	CCWGG	4 cut(s)	37, 257, 886, 1135
BcnI	CCSGG	5 cut(s)	127, 639, 644, 792, 1788
BcoDI	GTCTC	7 cut(s)	214, 375, 478, 507, 671, 1372, 2069
BfaI	CTAG	4 cut(s)	6, 876, 1253, 1953
BfmI	CTRYAG	1 cut(s)	169
BfoI	RGCGCY	2 cut(s)	97, 1060
Bme1390I	CCNGG	9 cut(s)	37, 127, 257, 639, 644, 792, 886, 1135, 1788
Bme18I	GGWCC	6 cut(s)	313, 376, 667, 1012, 1114, 1126
BmeRI	GACNNNNNGTC	2 cut(s)	520, 783
BmeT110I	CYCGRG	2 cut(s)	938, 1139
BmgBI	CACGTC	2 cut(s)	730, 1921
BmiI	GGNNCC	7 cut(s)	287, 420, 636, 653, 1045, 1150, 1423
BmrFI	CCNGG	9 cut(s)	37, 127, 257, 639, 644, 792, 886, 1135, 1788
BmsI	GCATC	4 cut(s)	421, 613, 1042, 2147
BmtI	GCTAGC	1 cut(s)	879
BpiI	GAAGAC	4 cut(s)	1386, 1524, 1643, 1703
BplI	GAGNNNNNCTC	4 cut(s)	1247, 1279, 1927, 1959
Bpu10I	CCTNAGC	1 cut(s)	2161
BpuEI	CTTGAG	2 cut(s)	1016, 1103
BpuMI	CCSGG	5 cut(s)	127, 639, 644, 792, 1788
BsaAI	YACGTR	1 cut(s)	1111
BsaBI	GATNNNNATC	1 cut(s)	435
BsaHI	GRCGYC	3 cut(s)	225, 603, 901
BsaI	GGTCTC	3 cut(s)	375, 671, 1372
BsaJI	CCNNGG	5 cut(s)	35, 36, 111, 939, 2116
BsaWI	WCCGGW	4 cut(s)	384, 421, 664, 1528
BsaXI	ACNNNNNCTCC	6 cut(s)	107, 137, 504, 534, 2124, 2154
Bsc4I	CCNNNNNNNGG	9 cut(s)	295, 310, 891, 944, 975, 1102, 1123, 1241, 2197
Bse118I	RCCGGY	2 cut(s)	691, 1059
Bse21I	CCTNAGG	1 cut(s)	1016
Bse3DI	GCAATG	1 cut(s)	1521
Bse8I	GATNNNNATC	1 cut(s)	435
BseBI	CCWGG	4 cut(s)	37, 257, 886, 1135
BseDI	CCNNGG	5 cut(s)	35, 36, 111, 939, 2116
BseGI	GGATG	6 cut(s)	412, 628, 1810, 1822, 1846, 2162
BseJI	GATNNNNATC	1 cut(s)	435
BseLI	CCNNNNNNNGG	9 cut(s)	295, 310, 891, 944, 975, 1102, 1123, 1241, 2197
BseMI	GCAATG	1 cut(s)	1521
BseMII	CTCAG	3 cut(s)	176, 1030, 1586
BsePI	GCGCGC	1 cut(s)	27
BseSI	GKGCMC	1 cut(s)	44
BseXI	GCAGC	2 cut(s)	226, 936
BseYI	CCCAGC	2 cut(s)	96, 1382
BsgI	GTGCAG	2 cut(s)	1147, 2126
Bsh1285I	CGRYCG	4 cut(s)	336, 748, 791, 1401
BshFI	GGCC	8 cut(s)	255, 642, 695, 1151, 1786, 2025, 2115, 2190
BsiEI	CGRYCG	4 cut(s)	336, 748, 791, 1401
BsiHKAI	GWGCWC	5 cut(s)	57, 134, 279, 303, 1322
BsiHKCI	CYCGRG	2 cut(s)	938, 1139
BslFI	GGGAC	3 cut(s)	109, 113, 188
BslI	CCNNNNNNNGG	9 cut(s)	295, 310, 891, 944, 975, 1102, 1123, 1241, 2197
BsmAI	GTCTC	7 cut(s)	214, 375, 478, 507, 671, 1372, 2069
BsmBI	CGTCTC	1 cut(s)	214
BsmFI	GGGAC	3 cut(s)	109, 113, 188
BsnI	GGCC	8 cut(s)	255, 642, 695, 1151, 1786, 2025, 2115, 2190
Bso31I	GGTCTC	3 cut(s)	375, 671, 1372
BsoBI	CYCGRG	2 cut(s)	938, 1139
Bsp1286I	GDGCHC	7 cut(s)	44, 57, 134, 279, 303, 639, 1322
Bsp68I	TCGCGA	3 cut(s)	235, 441, 750
BspANI	GGCC	8 cut(s)	255, 642, 695, 1151, 1786, 2025, 2115, 2190
BspCNI	CTCAG	3 cut(s)	175, 1029, 1585
BspLI	GGNNCC	7 cut(s)	287, 420, 636, 653, 1045, 1150, 1423
BspOI	GCTAGC	1 cut(s)	879
BspPI	GGATC	6 cut(s)	438, 543, 656, 678, 1028, 2099
BspTNI	GGTCTC	3 cut(s)	375, 671, 1372
BsrBI	CCGCTC	3 cut(s)	1029, 1776, 1995
BsrDI	GCAATG	1 cut(s)	1521
BsrFI	RCCGGY	2 cut(s)	691, 1059
BssAI	RCCGGY	2 cut(s)	691, 1059
BssECI	CCNNGG	5 cut(s)	35, 36, 111, 939, 2116
BssHII	GCGCGC	1 cut(s)	27
BssNI	GRCGYC	3 cut(s)	225, 603, 901
BssT1I	CCWWGG	1 cut(s)	111
Bst2UI	CCWGG	4 cut(s)	37, 257, 886, 1135
Bst4CI	ACNGT	5 cut(s)	80, 170, 707, 1324, 1459
BstACI	GRCGYC	3 cut(s)	225, 603, 901
BstBAI	YACGTR	1 cut(s)	1111
BstC8I	GCNNGC	6 cut(s)	29, 284, 877, 1031, 1061, 1265
BstDEI	CTNAG	6 cut(s)	162, 1016, 1572, 1667, 2030, 2161
BstF5I	GGATG	6 cut(s)	412, 628, 1810, 1822, 1846, 2162
BstH2I	RGCGCY	2 cut(s)	97, 1060
BstHHI	GCGC	7 cut(s)	29, 31, 96, 540, 1059, 1234, 1736
BstMAI	GTCTC	7 cut(s)	214, 375, 478, 507, 671, 1372, 2069
BstMCI	CGRYCG	4 cut(s)	336, 748, 791, 1401
BstMWI	GCNNNNNNNGC	9 cut(s)	93, 283, 315, 404, 447, 582, 876, 1264, 1672
BstNI	CCWGG	4 cut(s)	37, 257, 886, 1135
BstSCI	CCNGG	9 cut(s)	35, 125, 255, 637, 642, 790, 884, 1133, 1786
BstSFI	CTRYAG	1 cut(s)	169
BstSLI	GKGCMC	1 cut(s)	44
BstV1I	GCAGC	2 cut(s)	226, 936
BstV2I	GAAGAC	4 cut(s)	1386, 1524, 1643, 1703
BstX2I	RGATCY	2 cut(s)	430, 661
BstYI	RGATCY	2 cut(s)	430, 661
Bsu36I	CCTNAGG	1 cut(s)	1016
BsuRI	GGCC	8 cut(s)	255, 642, 695, 1151, 1786, 2025, 2115, 2190
BtgZI	GCGATG	2 cut(s)	422, 873
BtrI	CACGTC	2 cut(s)	730, 1921
BtsCI	GGATG	6 cut(s)	412, 628, 1810, 1822, 1846, 2162
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	156
BtuMI	TCGCGA	3 cut(s)	235, 441, 750
Cac8I	GCNNGC	6 cut(s)	29, 284, 877, 1031, 1061, 1265
CfoI	GCGC	7 cut(s)	29, 31, 96, 540, 1059, 1234, 1736
Cfr10I	RCCGGY	2 cut(s)	691, 1059
CseI	GACGC	4 cut(s)	233, 330, 592, 638
Csp6I	GTAC	1 cut(s)	1087
CviAII	CATG	4 cut(s)	88, 1375, 1646, 1834
CviQI	GTAC	1 cut(s)	1087
DdeI	CTNAG	6 cut(s)	162, 1016, 1572, 1667, 2030, 2161
DriI	GACNNNNNGTC	2 cut(s)	520, 783
Eam1105I	GACNNNNNGTC	2 cut(s)	520, 783
EciI	GGCGGA	8 cut(s)	58, 293, 305, 416, 465, 525, 1671, 2104
Ecl136II	GAGCTC	4 cut(s)	55, 132, 277, 301
Eco130I	CCWWGG	1 cut(s)	111
Eco24I	GRGCYC	5 cut(s)	57, 134, 279, 303, 639
Eco31I	GGTCTC	3 cut(s)	375, 671, 1372
Eco32I	GATATC	1 cut(s)	1354
Eco47I	GGWCC	6 cut(s)	313, 376, 667, 1012, 1114, 1126
Eco47III	AGCGCT	1 cut(s)	95
Eco53kI	GAGCTC	4 cut(s)	55, 132, 277, 301
Eco72I	CACGTG	1 cut(s)	1111
Eco81I	CCTNAGG	1 cut(s)	1016
Eco88I	CYCGRG	2 cut(s)	938, 1139
EcoICRI	GAGCTC	4 cut(s)	55, 132, 277, 301
EcoO109I	RGGNCCY	2 cut(s)	1012, 1149
EcoRII	CCWGG	4 cut(s)	35, 255, 884, 1133
EcoRV	GATATC	1 cut(s)	1354
EcoT14I	CCWWGG	1 cut(s)	111
EcoT22I	ATGCAT	1 cut(s)	1435
EcoT38I	GRGCYC	5 cut(s)	57, 134, 279, 303, 639
ErhI	CCWWGG	1 cut(s)	111
Esp3I	CGTCTC	1 cut(s)	214
FaeI	CATG	4 cut(s)	91, 1378, 1649, 1837
FaiI	YATR	5 cut(s)	89, 1155, 1376, 1647, 1835
FaqI	GGGAC	3 cut(s)	109, 113, 188
FatI	CATG	4 cut(s)	87, 1374, 1645, 1833
FauI	CCCGC	3 cut(s)	400, 970, 1318
FblI	GTMKAC	2 cut(s)	787, 1568
FokI	GGATG	6 cut(s)	399, 635, 1817, 1829, 1853, 2169
FriOI	GRGCYC	5 cut(s)	57, 134, 279, 303, 639
FspBI	CTAG	4 cut(s)	6, 876, 1253, 1953
GlaI	GCGC	7 cut(s)	28, 30, 95, 539, 1058, 1233, 1735
GsaI	CCCAGC	2 cut(s)	100, 1386
HaeII	RGCGCY	2 cut(s)	97, 1060
HaeIII	GGCC	8 cut(s)	255, 642, 695, 1151, 1786, 2025, 2115, 2190
HgaI	GACGC	4 cut(s)	233, 330, 592, 638
HhaI	GCGC	7 cut(s)	29, 31, 96, 540, 1059, 1234, 1736
Hin1I	GRCGYC	3 cut(s)	225, 603, 901
Hin1II	CATG	4 cut(s)	91, 1378, 1649, 1837
Hin6I	GCGC	7 cut(s)	27, 29, 94, 538, 1057, 1232, 1734
HinP1I	GCGC	7 cut(s)	27, 29, 94, 538, 1057, 1232, 1734
HincII	GTYRAC	3 cut(s)	271, 788, 1569
HindII	GTYRAC	3 cut(s)	271, 788, 1569
Hpy166II	GTNNAC	8 cut(s)	76, 156, 271, 733, 788, 1114, 1504, 1569
Hpy8I	GTNNAC	8 cut(s)	76, 156, 271, 733, 788, 1114, 1504, 1569
HpyCH4III	ACNGT	5 cut(s)	80, 170, 707, 1324, 1459
HpyCH4IV	ACGT	7 cut(s)	44, 327, 729, 901, 1110, 1417, 1920
HpyCH4V	TGCA	4 cut(s)	1164, 1203, 1433, 2107
HpyF10VI	GCNNNNNNNGC	9 cut(s)	93, 283, 315, 404, 447, 582, 876, 1264, 1672
HpyF3I	CTNAG	6 cut(s)	162, 1016, 1572, 1667, 2030, 2161
HpySE526I	ACGT	7 cut(s)	44, 327, 729, 901, 1110, 1417, 1920
Hsp92I	GRCGYC	3 cut(s)	225, 603, 901
Hsp92II	CATG	4 cut(s)	91, 1378, 1649, 1837
HspAI	GCGC	7 cut(s)	27, 29, 94, 538, 1057, 1232, 1734
KroI	GCCGGC	1 cut(s)	1059
KroNI	GCCGGC	1 cut(s)	1061
Lsp1109I	GCAGC	2 cut(s)	226, 936
LweI	GCATC	4 cut(s)	421, 613, 1042, 2147
MaeI	CTAG	4 cut(s)	6, 876, 1253, 1953
MaeII	ACGT	7 cut(s)	44, 327, 729, 901, 1110, 1417, 1920
MaeIII	GTNAC	4 cut(s)	80, 1613, 1939, 2180
MbiI	CCGCTC	3 cut(s)	1029, 1776, 1995
MflI	RGATCY	2 cut(s)	430, 661
MhlI	GDGCHC	7 cut(s)	44, 57, 134, 279, 303, 639, 1322
MluCI	AATT	2 cut(s)	526, 565
MmeI	TCCRAC	1 cut(s)	324
Mph1103I	ATGCAT	1 cut(s)	1435
MroNI	GCCGGC	1 cut(s)	1059
MseI	TTAA	4 cut(s)	120, 981, 990, 1533
MspA1I	CMGCKG	2 cut(s)	447, 927
MspR9I	CCNGG	9 cut(s)	37, 127, 257, 639, 644, 792, 886, 1135, 1788
MvaI	CCWGG	4 cut(s)	37, 257, 886, 1135
MwoI	GCNNNNNNNGC	9 cut(s)	93, 283, 315, 404, 447, 582, 876, 1264, 1672
NaeI	GCCGGC	1 cut(s)	1061
NciI	CCSGG	5 cut(s)	127, 639, 644, 792, 1788
NgoMIV	GCCGGC	1 cut(s)	1059
NheI	GCTAGC	1 cut(s)	875
NlaIII	CATG	4 cut(s)	91, 1378, 1649, 1837
NlaIV	GGNNCC	7 cut(s)	287, 420, 636, 653, 1045, 1150, 1423
NmeAIII	GCCGAG	3 cut(s)	851, 1020, 2141
NmuCI	GTSAC	2 cut(s)	80, 1939
NruI	TCGCGA	3 cut(s)	235, 441, 750
NsiI	ATGCAT	1 cut(s)	1435
PaeR7I	CTCGAG	1 cut(s)	1139
PasI	CCCWGGG	1 cut(s)	36
PauI	GCGCGC	1 cut(s)	27
PcsI	WCGNNNNNNNCGW	8 cut(s)	333, 338, 723, 726, 732, 741, 1604, 1969
PdiI	GCCGGC	1 cut(s)	1061
PfeI	GAWTC	3 cut(s)	230, 1076, 2209
PflFI	GACNNNGTC	1 cut(s)	104
PfoI	TCCNGGA	1 cut(s)	125
Ple19I	CGATCG	3 cut(s)	336, 748, 1401
PmaCI	CACGTG	1 cut(s)	1111
PmlI	CACGTG	1 cut(s)	1111
Ppu21I	YACGTR	1 cut(s)	1111
PpuMI	RGGWCCY	1 cut(s)	1012
Psp124BI	GAGCTC	4 cut(s)	57, 134, 279, 303
Psp5II	RGGWCCY	1 cut(s)	1012
Psp6I	CCWGG	4 cut(s)	35, 255, 884, 1133
PspCI	CACGTG	1 cut(s)	1111
PspFI	CCCAGC	2 cut(s)	96, 1382
PspGI	CCWGG	4 cut(s)	35, 255, 884, 1133
PspN4I	GGNNCC	7 cut(s)	287, 420, 636, 653, 1045, 1150, 1423
PspPPI	RGGWCCY	1 cut(s)	1012
PsuI	RGATCY	2 cut(s)	430, 661
PsyI	GACNNNGTC	1 cut(s)	104
PteI	GCGCGC	1 cut(s)	27
PvuI	CGATCG	3 cut(s)	336, 748, 1401
RruI	TCGCGA	3 cut(s)	235, 441, 750
RsaI	GTAC	1 cut(s)	1088
RsaNI	GTAC	1 cut(s)	1087
SacI	GAGCTC	4 cut(s)	57, 134, 279, 303
SalI	GTCGAC	2 cut(s)	786, 1567
SaqAI	TTAA	4 cut(s)	120, 981, 990, 1533
ScrFI	CCNGG	9 cut(s)	37, 127, 257, 639, 644, 792, 886, 1135, 1788
SduI	GDGCHC	7 cut(s)	44, 57, 134, 279, 303, 639, 1322
SfaNI	GCATC	4 cut(s)	421, 613, 1042, 2147
SfcI	CTRYAG	1 cut(s)	169
Sfr274I	CTCGAG	1 cut(s)	1139
SinI	GGWCC	6 cut(s)	313, 376, 667, 1012, 1114, 1126
SlaI	CTCGAG	1 cut(s)	1139
SmlI	CTYRAG	3 cut(s)	995, 1118, 1139
SmoI	CTYRAG	3 cut(s)	995, 1118, 1139
Sse9I	AATT	2 cut(s)	526, 565
SspMI	CTAG	4 cut(s)	6, 876, 1253, 1953
SstI	GAGCTC	4 cut(s)	57, 134, 279, 303
StyD4I	CCNGG	9 cut(s)	35, 125, 255, 637, 642, 790, 884, 1133, 1786
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	5 cut(s)	80, 170, 707, 1324, 1459
TaiI	ACGT	7 cut(s)	47, 330, 732, 904, 1113, 1420, 1923
TaqII	GACCGA	2 cut(s)	393, 689
TasI	AATT	2 cut(s)	526, 565
TfiI	GAWTC	3 cut(s)	230, 1076, 2209
Tru1I	TTAA	4 cut(s)	120, 981, 990, 1533
Tru9I	TTAA	4 cut(s)	120, 981, 990, 1533
TscAI	CASTG	1 cut(s)	163
TseFI	GTSAC	2 cut(s)	80, 1939
TseI	GCWGC	2 cut(s)	214, 924
Tsp45I	GTSAC	2 cut(s)	80, 1939
TspDTI	ATGAA	4 cut(s)	104, 1298, 1772, 1857
TspGWI	ACGGA	5 cut(s)	94, 635, 1036, 1715, 1931
TspRI	CASTG	1 cut(s)	163
Tth111I	GACNNNGTC	1 cut(s)	104
VpaK11BI	GGWCC	6 cut(s)	313, 376, 667, 1012, 1114, 1126
XbaI	TCTAGA	1 cut(s)	1252
XhoI	CTCGAG	1 cut(s)	1139
XmiI	GTMKAC	2 cut(s)	787, 1568
XspI	CTAG	4 cut(s)	6, 876, 1253, 1953
ZraI	GACGTC	1 cut(s)	902
Zsp2I	ATGCAT	1 cut(s)	1435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.