pycom03g01470
MYB Family

Bromodomain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0006248
Physical Location & Seq
Forward (+)
1096953 .. 1097780
828 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g01470.1

Sequence Viewer

Length: 828 bp
ATGAACGACCAGCTCCCGAAACCACAATCCGCGACTGAAACCGAAAAATCGAACGTGCCCAAGATCGAAACCAAAGCTCAGAAGCTCGAGTCCCATGGCTCTGAGAAACCCATCAAGTCGTCCATTGTTGTGTGTGGAAAACTTGGTTCTGTCAATGCACTCTCTGATGCGAAGAATCGGAAGGGAGATAAGATCGAAGAGAAAGCAAAGGCGGCGAATGTGAGGAAGGCGGATGGTGCTGCATTTGTGAAGGTTGAGGACAAGGGGGTTAGGAAACGGAGGACGCAAGAAAGAGGCGGGCGGAGAGGCATGAGCACGAGGGGCAGGAATGCAGCGAACCCGACCAAGCGGCATGAGTATGGTGTCAATGAACTCAGTTCACATGACGGTTTGGACGCGTTGAAAGCGGAGAAGGAGAAGAAAGAAAACGGAAGGAAGAAGCAAGGCGCGGCGAGGTTCTTGAAGCGAATGAAGCAGACCTCGAGTACTGAAGTGAAGAAGGAGAATTCGGATGGTACCGAGGAGGATAGCGAGGAGAGCGAGGACGAGAAGAAGAAGAAGAAGAAGAAGCCGACGAGGGGTAGGATGAAGCTGGAGGTTGAGAGGAAGGAGAGGGTGACGCGGAGTTCAACGGAAAGCGGAGGGGGGAGGGGAGGGGGAAGGAGGAGTCAGGAGAGCAATGGGAGGGGAAGAAGAGGGGTTGGGAGGCCACCGAAGAGGCCGGAAACTTCAGCGGCTGGGGCGGGGAGCGGGAAGAGAGGGAGAGACAACGGGGAGGCGGATCAGGTGGGGAGTGCAGGGAGGCCGAGAAAGCGTACAAGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain Myb_DNA-binding

Protein Analysis

276

Amino Acids

30.18

Weight (kDa)

10.44

Isoelectric Point (pI)

52.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 515
AccB1I GGYRCC 1 cut(s) 515
AccBSI CCGCTC 1 cut(s) 750
AccII CGCG 4 cut(s) 32, 398, 449, 622
AclWI GGATC 1 cut(s) 789
AcsI RAATTY 1 cut(s) 505
AcuI CTGAAG 2 cut(s) 510, 714
AfaI GTAC 3 cut(s) 487, 517, 817
AfiI CCNNNNNNNGG 1 cut(s) 578
AflIII ACRYGT 1 cut(s) 396
AgsI TTSAA 3 cut(s) 403, 463, 630
AluBI AGCT 4 cut(s) 13, 77, 85, 592
AluI AGCT 4 cut(s) 13, 77, 85, 592
Alw21I GWGCWC 1 cut(s) 317
Alw26I GTCTC 1 cut(s) 759
AlwI GGATC 1 cut(s) 789
AlwNI CAGNNNCTG 1 cut(s) 737
Ama87I CYCGRG 2 cut(s) 86, 481
AoxI GGCC 3 cut(s) 707, 719, 803
ApeKI GCWGC 2 cut(s) 239, 332
ApoI RAATTY 1 cut(s) 505
Asp718I GGTACC 1 cut(s) 515
AspLEI GCGC 1 cut(s) 449
AsuHPI GGTGA 1 cut(s) 628
AvaI CYCGRG 2 cut(s) 86, 481
BaeGI GKGCMC 1 cut(s) 60
BanI GGYRCC 1 cut(s) 515
BauI CACGAG 1 cut(s) 316
Bbv12I GWGCWC 1 cut(s) 317
BbvI GCAGC 2 cut(s) 226, 344
BccI CCATC 3 cut(s) 119, 227, 506
BcoDI GTCTC 1 cut(s) 759
BisI GCNGC 6 cut(s) 213, 240, 333, 350, 450, 735
BlsI GCNGC 6 cut(s) 214, 241, 334, 351, 451, 736
BmcAI AGTACT 1 cut(s) 487
BmeT110I CYCGRG 2 cut(s) 86, 481
BmiI GGNNCC 1 cut(s) 517
BmsI GCATC 1 cut(s) 157
BpmI CTGGAG 1 cut(s) 614
BsaJI CCNNGG 2 cut(s) 94, 519
Bsc4I CCNNNNNNNGG 1 cut(s) 578
Bse3DI GCAATG 1 cut(s) 685
BseDI CCNNGG 2 cut(s) 94, 519
BseGI GGATG 3 cut(s) 238, 517, 591
BseLI CCNNNNNNNGG 1 cut(s) 578
BseMI GCAATG 1 cut(s) 685
BseMII CTCAG 3 cut(s) 92, 93, 388
BseRI GAGGAG 3 cut(s) 536, 548, 679
BseSI GKGCMC 1 cut(s) 60
BseXI GCAGC 2 cut(s) 226, 344
BseYI CCCAGC 1 cut(s) 737
BsgI GTGCAG 1 cut(s) 816
Bsh1236I CGCG 4 cut(s) 32, 398, 449, 622
BshFI GGCC 3 cut(s) 709, 721, 805
BshNI GGYRCC 1 cut(s) 515
BsiHKAI GWGCWC 1 cut(s) 317
BsiHKCI CYCGRG 2 cut(s) 86, 481
BsiSI CCGG 1 cut(s) 722
BslFI GGGAC 1 cut(s) 76
BslI CCNNNNNNNGG 1 cut(s) 578
BsmAI GTCTC 1 cut(s) 759
BsmFI GGGAC 1 cut(s) 76
BsmI GAATGC 1 cut(s) 334
BsnI GGCC 3 cut(s) 709, 721, 805
BsoBI CYCGRG 2 cut(s) 86, 481
Bsp1286I GDGCHC 2 cut(s) 60, 317
Bsp143I GATC 3 cut(s) 63, 192, 781
Bsp19I CCATGG 1 cut(s) 94
BspANI GGCC 3 cut(s) 709, 721, 805
BspCNI CTCAG 3 cut(s) 91, 94, 387
BspFNI CGCG 4 cut(s) 32, 398, 449, 622
BspLI GGNNCC 1 cut(s) 517
BspPI GGATC 1 cut(s) 789
BspT107I GGYRCC 1 cut(s) 515
BsrBI CCGCTC 1 cut(s) 750
BsrDI GCAATG 1 cut(s) 685
BssECI CCNNGG 2 cut(s) 94, 519
BssMI GATC 3 cut(s) 63, 192, 781
BssSI CACGAG 1 cut(s) 316
BssT1I CCWWGG 1 cut(s) 94
Bst2BI CACGAG 1 cut(s) 316
Bst4CI ACNGT 1 cut(s) 389
Bst6I CTCTTC 4 cut(s) 192, 688, 710, 749
BstC8I GCNNGC 1 cut(s) 299
BstDEI CTNAG 3 cut(s) 78, 102, 374
BstDSI CCRYGG 1 cut(s) 94
BstF5I GGATG 3 cut(s) 238, 517, 591
BstFNI CGCG 4 cut(s) 32, 398, 449, 622
BstHHI GCGC 1 cut(s) 449
BstKTI GATC 3 cut(s) 66, 195, 784
BstMAI GTCTC 1 cut(s) 759
BstMBI GATC 3 cut(s) 63, 192, 781
BstMWI GCNNNNNNNGC 8 cut(s) 212, 236, 321, 404, 472, 537, 740, 811
BstSLI GKGCMC 1 cut(s) 60
BstUI CGCG 4 cut(s) 32, 398, 449, 622
BstV1I GCAGC 2 cut(s) 226, 344
BsuRI GGCC 3 cut(s) 709, 721, 805
BtgI CCRYGG 1 cut(s) 94
BtsCI GGATG 3 cut(s) 238, 517, 591
Cac8I GCNNGC 1 cut(s) 299
CaiI CAGNNNCTG 1 cut(s) 737
CfoI GCGC 1 cut(s) 449
CseI GACGC 3 cut(s) 292, 404, 628
Csp6I GTAC 3 cut(s) 486, 516, 816
CviAII CATG 4 cut(s) 95, 310, 353, 383
CviQI GTAC 3 cut(s) 486, 516, 816
DdeI CTNAG 3 cut(s) 78, 102, 374
DpnI GATC 3 cut(s) 65, 194, 783
DpnII GATC 3 cut(s) 63, 192, 781
Eam1104I CTCTTC 4 cut(s) 192, 688, 710, 749
EarI CTCTTC 4 cut(s) 192, 688, 710, 749
EciI GGCGGA 3 cut(s) 245, 316, 794
Eco130I CCWWGG 1 cut(s) 94
Eco57I CTGAAG 2 cut(s) 510, 714
Eco88I CYCGRG 2 cut(s) 86, 481
EcoRI GAATTC 1 cut(s) 505
EcoT14I CCWWGG 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 4 cut(s) 98, 313, 356, 386
FaiI YATR 5 cut(s) 96, 311, 354, 360, 384
FaqI GGGAC 1 cut(s) 76
FatI CATG 4 cut(s) 94, 309, 352, 382
FauI CCCGC 3 cut(s) 290, 736, 743
Fnu4HI GCNGC 6 cut(s) 213, 240, 333, 350, 450, 735
FokI GGATG 3 cut(s) 245, 524, 598
Fsp4HI GCNGC 6 cut(s) 213, 240, 333, 350, 450, 735
GlaI GCGC 1 cut(s) 448
GluI GCNGC 6 cut(s) 213, 240, 333, 350, 450, 735
GsaI CCCAGC 1 cut(s) 741
GsuI CTGGAG 1 cut(s) 614
HaeIII GGCC 3 cut(s) 709, 721, 805
HapII CCGG 1 cut(s) 722
HgaI GACGC 3 cut(s) 292, 404, 628
HhaI GCGC 1 cut(s) 449
Hin1II CATG 4 cut(s) 98, 313, 356, 386
Hin6I GCGC 1 cut(s) 447
HinP1I GCGC 1 cut(s) 447
HinfI GANTC 3 cut(s) 89, 175, 667
HpaII CCGG 1 cut(s) 722
HphI GGTGA 1 cut(s) 628
Hpy166II GTNNAC 1 cut(s) 380
Hpy188I TCNGA 5 cut(s) 81, 103, 166, 180, 511
Hpy188III TCNNGA 3 cut(s) 16, 460, 671
Hpy8I GTNNAC 1 cut(s) 380
Hpy99I CGWCG 1 cut(s) 577
HpyAV CCTTC 8 cut(s) 175, 220, 244, 406, 426, 493, 601, 654
HpyCH4III ACNGT 1 cut(s) 389
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 4 cut(s) 158, 242, 332, 797
HpyF10VI GCNNNNNNNGC 8 cut(s) 212, 236, 321, 404, 472, 537, 740, 811
HpyF3I CTNAG 3 cut(s) 78, 102, 374
HpySE526I ACGT 1 cut(s) 54
Hsp92II CATG 4 cut(s) 98, 313, 356, 386
HspAI GCGC 1 cut(s) 447
KpnI GGTACC 1 cut(s) 519
Kzo9I GATC 3 cut(s) 63, 192, 781
LmnI GCTCC 2 cut(s) 18, 747
LpnPI CCDG 8 cut(s) 23, 310, 578, 656, 723, 735, 770, 783
Lsp1109I GCAGC 2 cut(s) 226, 344
LweI GCATC 1 cut(s) 157
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 616
MalI GATC 3 cut(s) 65, 194, 783
MbiI CCGCTC 1 cut(s) 750
MboI GATC 3 cut(s) 63, 192, 781
MhlI GDGCHC 2 cut(s) 60, 317
MluCI AATT 1 cut(s) 505
MluI ACGCGT 1 cut(s) 396
MlyI GAGTC 2 cut(s) 98, 676
MslI CAYNNNNRTG 2 cut(s) 128, 357
MspA1I CMGCKG 1 cut(s) 734
MspI CCGG 1 cut(s) 722
Mva1269I GAATGC 1 cut(s) 334
MvnI CGCG 4 cut(s) 32, 398, 449, 622
MwoI GCNNNNNNNGC 8 cut(s) 212, 236, 321, 404, 472, 537, 740, 811
NcoI CCATGG 1 cut(s) 94
NdeII GATC 3 cut(s) 63, 192, 781
NlaIII CATG 4 cut(s) 98, 313, 356, 386
NlaIV GGNNCC 1 cut(s) 517
NmuCI GTSAC 1 cut(s) 616
PaeR7I CTCGAG 2 cut(s) 86, 481
PctI GAATGC 1 cut(s) 334
PfeI GAWTC 1 cut(s) 175
PkrI GCNGC 6 cut(s) 214, 241, 334, 351, 451, 736
PleI GAGTC 2 cut(s) 97, 675
PpsI GAGTC 2 cut(s) 97, 675
PspFI CCCAGC 1 cut(s) 737
PspN4I GGNNCC 1 cut(s) 517
PspXI VCTCGAGB 2 cut(s) 86, 481
PstNI CAGNNNCTG 1 cut(s) 737
RsaI GTAC 3 cut(s) 487, 517, 817
RsaNI GTAC 3 cut(s) 486, 516, 816
RseI CAYNNNNRTG 2 cut(s) 128, 357
SatI GCNGC 6 cut(s) 213, 240, 333, 350, 450, 735
Sau3AI GATC 3 cut(s) 63, 192, 781
ScaI AGTACT 1 cut(s) 487
SchI GAGTC 2 cut(s) 98, 676
SduI GDGCHC 2 cut(s) 60, 317
SfaNI GCATC 1 cut(s) 157
Sfr274I CTCGAG 2 cut(s) 86, 481
SlaI CTCGAG 2 cut(s) 86, 481
SmiMI CAYNNNNRTG 2 cut(s) 128, 357
SmlI CTYRAG 2 cut(s) 86, 481
SmoI CTYRAG 2 cut(s) 86, 481
Sse9I AATT 1 cut(s) 505
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 1 cut(s) 389
TaiI ACGT 1 cut(s) 57
TaqI TCGA 5 cut(s) 50, 66, 87, 195, 482
TasI AATT 1 cut(s) 505
TatI WGTACW 1 cut(s) 485
TauI GCSGC 4 cut(s) 215, 352, 452, 737
TfiI GAWTC 1 cut(s) 175
TseFI GTSAC 1 cut(s) 616
TseI GCWGC 2 cut(s) 239, 332
Tsp45I GTSAC 1 cut(s) 616
TspDTI ATGAA 4 cut(s) 17, 384, 485, 602
TspGWI ACGGA 3 cut(s) 292, 444, 647
XapI RAATTY 1 cut(s) 505
XhoI CTCGAG 2 cut(s) 86, 481
ZrmI AGTACT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.