Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0006248

Physical Location & Seq

Genomic Coordinates Reverse (-)

85677715 .. 85681031

Gene Structure 3317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG554600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2124 bp

ATGGCTAGTAGGGAACACGAAACGAGCGCGCAACCGTGGGGCACGTTAGAGGAGCTCTTGCTGGTGTGCGCCGTGAACCGTCACGGCACGAAGCGCTGGGACTCCGTCGCCAAGGAGGTTAAGTCCCGGAGCTCCACGACGTCGGCGGTGTTCACTGCTCAGAACTGTAGGGACAAGTTCGACGACCTCAAACGCCGCTTCGTCGTCTCGCTGCAAAACGACGCCGAATCGCGAAGCGGCGACGACGACGGGCTGGCGTTTATGGTTGACGAGCTCCGCAGGCTCCGAGTCGAGGAGCTCCGCCGCGAGGTCCGCCGTCGCGACGTTTCGATCGTGTCGTTGGAGTTGAAGGTGAAGAAGATGGAGGAGGAGGACCGAGACCGGAGCTTGAAGGCGGCGGAGGCGGGGCATCCGGCTCCGGTAAAGGATCTCCATCGCGACGGCGGCGGAGGAGGAGAGCAATCGGAGTTGCCGGAGAAACTGGCCGGAAAACCAAACTCCGGCGGAGACTTCGTGTCCGATTCCTCCGAGCGCGAGAACCGATCCTTCAACGAGTCCAATTCCACAAGCCAGAGAAGCGAGGCGAAAGCAAACGGCGTCGTGGAGAAAAAAACGGATGCGGACGCGGAGCCCGGCCCGGAGAGGAACCAACCAGATCCGGTCCAGACCGAGACCCGATCCGAACCGGCCTCTGCCAACGGTAAAGTGATCGACGACGACGACGTGGACGATAAAAACGATCGTGAAGGCGGAGGAGGAGCAGAGCCGACGACGACGGGTCGACCCGGCGAGTCGAACGAGTTGTCGGGGTCGAAACGGGCGGTGGTAAAGGAAGTGAGAAAGCAGAACAGCGATGTTCAAAGCTCGGCTAGCTTGACGAGGAGGAGGAAACGACGTCGTAAAGGTGGCGATAGTAGCAGCGGCGAAGAGCCCGAGGGTGGTGAGGAAGTTTCTCCCGCCACCACGAAACGGGTTAAGCTCGTTAAACTTGAGCCGTTGGTCAAGGTCCTCAGGATCATCCGCTCGCATCGGCTCGGCTCCGTATTCCAGCGCCGGCTTCGGAGCCAGGAGTCACAAAGGTACAAGAACCTGATTAGGGAACACGTGGACCTCAAGGTGGTCCAATCCAGGCTCGAGAAAGGGGCCTACAACGACTGCACCCACAAGTTCTTCCGCGACCTCCTCCTCGTATTCAGCAACGCCGTCGTTTTCTTCCGCAAGACCGCGCCGGAACACGTGGCGGCTCTAGAGCTACGCTCGCTGGTGTTGAAGGAAATGAACGACCAGCTACCGAGACCTAGACCCGCCGTGAGCACAGTGAAGCCCAAGCCCAATGTAGAGTCCGATATCACTACTACTACTACTTCCATGAGACCCAGCAAGTCGTCTTCGATCGTTGTGTGCGGTAAACGTGGTTCCATCAATGCATTATCGGAAAACAAGAAAGGAATTGTAAGAAAGGTAGAGGTCGAAGAGAGAGAAGCGAAGGTGAAGGTGAATGGGAAGAAGGTTGAAGACAGTGCACCGGTTAAGGTGGAGGACAAGGGTGTAAGGAAGAGAAGGTCGGCTCAGGAAAGAAGGGGAGAGAGAAGGTCGAGGACGACGACAACGAGTAACAGCAAGAAGGTAGAAGCGAAGACAAAGCATGAGTCCGGCGGAAATGAGGTGAGTATGCGTGATGGTTTGGAGGCGGTGAAGACGGAGAAGAAAGAAGACGTGAAGAAGAAGCAAGGCGCGGCGAGCTTTTTGAAGAGAATGAAGCAGAATGGTAGGAGAGGAGTTGGACGGGGTAAGAACTCTTCGGATGTTTCAGAGGATGAGAGTAAGGATAGTATGGTGGAGGAGGAGGAGGAGGAGGAGGTGGAGGAGGAGGAGGAAGAAAAGAAGAAGAGGACAGGGAGGAAGAAAACGGAGGTGGAGAGGAAAGTGAGGTTGACTCGCAGCTCTAGTGGAAGGCGAGGGGGAAGAGGCCAGGAAAGCGGTGGGAGGGGGAAGAGAGGGGTCGGGAGGCCGCCTAAGAAAACAGAGACGGCGGCGGCTGGAAGCGGAAAACGGGGGAGAGACAATGGCGAGGCGGATCAGGTGGGGAGTGCAGGGAGGCCGAGGAAACGAACAAGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain Myb_DNA-binding

Protein Analysis

707

Amino Acids

78.64

Weight (kDa)

9.79

Isoelectric Point (pI)

64.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	11 - 45	2.4e-06	Myb-like DNA-binding domain
Bromodomain	PF00439	335 - 416	7.2e-09	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44430 AT3G60110
fragaria_vesca	FvH4_3g44130 FvH4_3g44130 FvH4_3g44130
malus_domestica	MD03G1017000.v1.1 MD11G1017600.v1.1 MD11G1018000.v1.1 MD11G1018200.v1.1
prunus_persica	Prupe.6G015400_v2.0.a1
pyrus_communis	pycom03g01460 pycom03g01470 pycom11g01250 pycom11g01320
rosa_chinensis	RchiOBHm_Chr5g0080461
rosa_laevigata	RLG00000036858
rosa_multiflora	Rmu_co8095392.1_g000001 Rmu_sc0020711.1_g000001 Rmu_sc0025164.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002940
rosa_rugosa	Rorug05G0469000 Rorug05G0469100
rosa_samantha	Rh5AG522700 Rh5BG544300 Rh5CG567900 Rh5DG554600
rosa_wichuraiana	Rw0G023230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	143, 898
AccBSI	CCGCTC	1 cut(s)	1023
AccI	GTMKAC	1 cut(s)	781
AclWI	GGATC	6 cut(s)	435, 537, 650, 672, 1022, 2085
AcoI	YGGCCR	1 cut(s)	483
AcvI	CACGTG	2 cut(s)	1105, 1237
AcyI	GRCGYC	4 cut(s)	140, 222, 597, 895
AfaI	GTAC	1 cut(s)	1082
AfeI	AGCGCT	1 cut(s)	95
AfiI	CCNNNNNNNGG	7 cut(s)	292, 307, 500, 938, 969, 1096, 1117
AflIII	ACRYGT	2 cut(s)	1102, 1234
AgeI	ACCGGT	1 cut(s)	1525
AgsI	TTSAA	7 cut(s)	349, 391, 550, 860, 1270, 1514, 1750
AhdI	GACNNNNNGTC	2 cut(s)	514, 777
AjiI	CACGTC	2 cut(s)	724, 1717
AjnI	CCWGG	3 cut(s)	1065, 1127, 1971
Alw21I	GWGCWC	6 cut(s)	57, 134, 276, 300, 1316, 1525
Alw26I	GTCTC	8 cut(s)	211, 372, 501, 665, 1288, 1366, 2021, 2055
Alw44I	GTGCAC	1 cut(s)	1521
AlwI	GGATC	6 cut(s)	435, 537, 650, 672, 1022, 2085
Ama87I	CYCGRG	2 cut(s)	932, 1133
Aor51HI	AGCGCT	1 cut(s)	95
AoxI	GGCC	7 cut(s)	483, 634, 687, 1143, 1969, 2009, 2099
ApaLI	GTGCAC	1 cut(s)	1521
ApeKI	GCWGC	3 cut(s)	211, 918, 1941
ArsI	GACNNNNNNTTYG	4 cut(s)	788, 820, 1634, 1666
AsiGI	ACCGGT	1 cut(s)	1525
AspLEI	GCGC	8 cut(s)	29, 31, 71, 96, 534, 1053, 1228, 1736
AspS9I	GGNCC	8 cut(s)	310, 373, 635, 661, 1006, 1108, 1120, 1143
AsuC2I	CCSGG	4 cut(s)	127, 633, 638, 786
AsuHPI	GGTGA	6 cut(s)	364, 953, 1501, 1507, 1678, 1705
AsuNHI	GCTAGC	1 cut(s)	869
AvaI	CYCGRG	2 cut(s)	932, 1133
AvaII	GGWCC	6 cut(s)	310, 373, 661, 1006, 1108, 1120
AxyI	CCTNAGG	1 cut(s)	1010
BaeGI	GKGCMC	2 cut(s)	44, 1525
BanII	GRGCYC	6 cut(s)	57, 134, 276, 300, 633, 933
BarI	GAAGNNNNNNTAC	2 cut(s)	1783, 1815
BbrPI	CACGTG	2 cut(s)	1105, 1237
BbsI	GAAGAC	5 cut(s)	1380, 1521, 1643, 1703, 1719
Bbv12I	GWGCWC	6 cut(s)	57, 134, 276, 300, 1316, 1525
BbvI	GCAGC	3 cut(s)	198, 930, 1953
BccI	CCATC	4 cut(s)	355, 441, 1427, 1673
BceAI	ACGGC	9 cut(s)	56, 100, 300, 457, 610, 979, 1187, 1292, 2046
BcgI	CGANNNNNNTGC	2 cut(s)	1186, 1220
BciT130I	CCWGG	3 cut(s)	1067, 1129, 1973
BcnI	CCSGG	4 cut(s)	127, 633, 638, 786
BcoDI	GTCTC	8 cut(s)	211, 372, 501, 665, 1288, 1366, 2021, 2055
BfaI	CTAG	5 cut(s)	6, 870, 1247, 1299, 1947
BfmI	CTRYAG	1 cut(s)	166
BfoI	RGCGCY	2 cut(s)	97, 1054
Bme1390I	CCNGG	7 cut(s)	127, 633, 638, 786, 1067, 1129, 1973
Bme18I	GGWCC	6 cut(s)	310, 373, 661, 1006, 1108, 1120
BmeRI	GACNNNNNGTC	2 cut(s)	514, 777
BmeT110I	CYCGRG	2 cut(s)	932, 1133
BmgBI	CACGTC	2 cut(s)	724, 1717
BmgT120I	GGNCC	8 cut(s)	310, 373, 635, 661, 1006, 1108, 1120, 1143
BmiI	GGNNCC	8 cut(s)	284, 417, 630, 647, 1039, 1064, 1144, 1417
BmrFI	CCNGG	7 cut(s)	127, 633, 638, 786, 1067, 1129, 1973
BmsI	GCATC	3 cut(s)	418, 607, 1036
BmtI	GCTAGC	1 cut(s)	873
BpiI	GAAGAC	5 cut(s)	1380, 1521, 1643, 1703, 1719
BplI	GAGNNNNNCTC	4 cut(s)	1241, 1273, 1921, 1953
Bpu10I	CCTNAGC	1 cut(s)	1569
BpuEI	CTTGAG	2 cut(s)	1010, 1097
BpuMI	CCSGG	4 cut(s)	127, 633, 638, 786
BsaAI	YACGTR	2 cut(s)	1105, 1237
BsaBI	GATNNNNATC	1 cut(s)	432
BsaHI	GRCGYC	4 cut(s)	140, 222, 597, 895
BsaI	GGTCTC	4 cut(s)	372, 665, 1288, 1366
BsaJI	CCNNGG	4 cut(s)	35, 111, 933, 2102
BsaWI	WCCGGW	4 cut(s)	381, 418, 658, 1525
BsaXI	ACNNNNNCTCC	4 cut(s)	107, 137, 498, 528
Bsc4I	CCNNNNNNNGG	7 cut(s)	292, 307, 500, 938, 969, 1096, 1117
Bse118I	RCCGGY	3 cut(s)	685, 1053, 1525
Bse1I	ACTGG	1 cut(s)	486
Bse21I	CCTNAGG	1 cut(s)	1010
Bse8I	GATNNNNATC	1 cut(s)	432
BseBI	CCWGG	3 cut(s)	1067, 1129, 1973
BseDI	CCNNGG	4 cut(s)	35, 111, 933, 2102
BseGI	GGATG	5 cut(s)	409, 622, 1017, 1810, 1822
BseJI	GATNNNNATC	1 cut(s)	432
BseLI	CCNNNNNNNGG	7 cut(s)	292, 307, 500, 938, 969, 1096, 1117
BseMII	CTCAG	3 cut(s)	173, 1024, 1583
BseNI	ACTGG	1 cut(s)	486
BsePI	GCGCGC	1 cut(s)	27
BseSI	GKGCMC	2 cut(s)	44, 1525
BseXI	GCAGC	3 cut(s)	198, 930, 1953
BseYI	CCCAGC	2 cut(s)	96, 1376
BsgI	GTGCAG	2 cut(s)	1141, 2112
Bsh1285I	CGRYCG	3 cut(s)	333, 742, 1395
BshFI	GGCC	7 cut(s)	485, 636, 689, 1145, 1971, 2011, 2101
BshTI	ACCGGT	1 cut(s)	1525
BsiEI	CGRYCG	3 cut(s)	333, 742, 1395
BsiHKAI	GWGCWC	6 cut(s)	57, 134, 276, 300, 1316, 1525
BsiHKCI	CYCGRG	2 cut(s)	932, 1133
BslFI	GGGAC	3 cut(s)	109, 113, 185
BslI	CCNNNNNNNGG	7 cut(s)	292, 307, 500, 938, 969, 1096, 1117
BsmAI	GTCTC	8 cut(s)	211, 372, 501, 665, 1288, 1366, 2021, 2055
BsmBI	CGTCTC	2 cut(s)	211, 2021
BsmFI	GGGAC	3 cut(s)	109, 113, 185
BsnI	GGCC	7 cut(s)	485, 636, 689, 1145, 1971, 2011, 2101
Bso31I	GGTCTC	4 cut(s)	372, 665, 1288, 1366
BsoBI	CYCGRG	2 cut(s)	932, 1133
Bsp1286I	GDGCHC	9 cut(s)	44, 57, 134, 276, 300, 633, 933, 1316, 1525
Bsp68I	TCGCGA	3 cut(s)	232, 321, 438
BspANI	GGCC	7 cut(s)	485, 636, 689, 1145, 1971, 2011, 2101
BspCNI	CTCAG	3 cut(s)	172, 1023, 1582
BspLI	GGNNCC	8 cut(s)	284, 417, 630, 647, 1039, 1064, 1144, 1417
BspOI	GCTAGC	1 cut(s)	873
BspPI	GGATC	6 cut(s)	435, 537, 650, 672, 1022, 2085
BspQI	GCTCTTC	1 cut(s)	921
BspTNI	GGTCTC	4 cut(s)	372, 665, 1288, 1366
BsrBI	CCGCTC	1 cut(s)	1023
BsrFI	RCCGGY	3 cut(s)	685, 1053, 1525
BsrI	ACTGG	1 cut(s)	486
BssAI	RCCGGY	3 cut(s)	685, 1053, 1525
BssECI	CCNNGG	4 cut(s)	35, 111, 933, 2102
BssHII	GCGCGC	1 cut(s)	27
BssNI	GRCGYC	4 cut(s)	140, 222, 597, 895
BssT1I	CCWWGG	1 cut(s)	111
Bst2UI	CCWGG	3 cut(s)	1067, 1129, 1973
Bst4CI	ACNGT	6 cut(s)	36, 80, 167, 701, 1318, 1520
Bst6I	CTCTTC	8 cut(s)	921, 1467, 1550, 1745, 1804, 1883, 1960, 1988
BstACI	GRCGYC	4 cut(s)	140, 222, 597, 895
BstBAI	YACGTR	2 cut(s)	1105, 1237
BstC8I	GCNNGC	8 cut(s)	29, 255, 281, 871, 1025, 1055, 1259, 1741
BstDEI	CTNAG	4 cut(s)	159, 1010, 1569, 2016
BstDSI	CCRYGG	1 cut(s)	35
BstF5I	GGATG	5 cut(s)	409, 622, 1017, 1810, 1822
BstH2I	RGCGCY	2 cut(s)	97, 1054
BstHHI	GCGC	8 cut(s)	29, 31, 71, 96, 534, 1053, 1228, 1736
BstMAI	GTCTC	8 cut(s)	211, 372, 501, 665, 1288, 1366, 2021, 2055
BstMCI	CGRYCG	3 cut(s)	333, 742, 1395
BstNI	CCWGG	3 cut(s)	1067, 1129, 1973
BstSCI	CCNGG	7 cut(s)	125, 631, 636, 784, 1065, 1127, 1971
BstSFI	CTRYAG	1 cut(s)	166
BstSLI	GKGCMC	2 cut(s)	44, 1525
BstV1I	GCAGC	3 cut(s)	198, 930, 1953
BstV2I	GAAGAC	5 cut(s)	1380, 1521, 1643, 1703, 1719
BstX2I	RGATCY	2 cut(s)	427, 655
BstYI	RGATCY	2 cut(s)	427, 655
Bsu36I	CCTNAGG	1 cut(s)	1010
BsuRI	GGCC	7 cut(s)	485, 636, 689, 1145, 1971, 2011, 2101
BtgI	CCRYGG	1 cut(s)	35
BtgZI	GCGATG	2 cut(s)	419, 867
BtrI	CACGTC	2 cut(s)	724, 1717
BtsCI	GGATG	5 cut(s)	409, 622, 1017, 1810, 1822
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	3 cut(s)	153, 1323, 1525
BtuMI	TCGCGA	3 cut(s)	232, 321, 438
Cac8I	GCNNGC	8 cut(s)	29, 255, 281, 871, 1025, 1055, 1259, 1741
CfoI	GCGC	8 cut(s)	29, 31, 71, 96, 534, 1053, 1228, 1736
Cfr10I	RCCGGY	3 cut(s)	685, 1053, 1525
Cfr13I	GGNCC	8 cut(s)	310, 373, 635, 661, 1006, 1108, 1120, 1143
CseI	GACGC	3 cut(s)	230, 586, 632
Csp6I	GTAC	1 cut(s)	1081
CspAI	ACCGGT	1 cut(s)	1525
CviAII	CATG	2 cut(s)	1369, 1646
CviQI	GTAC	1 cut(s)	1081
DdeI	CTNAG	4 cut(s)	159, 1010, 1569, 2016
DriI	GACNNNNNGTC	2 cut(s)	514, 777
EaeI	YGGCCR	1 cut(s)	483
Eam1104I	CTCTTC	8 cut(s)	921, 1467, 1550, 1745, 1804, 1883, 1960, 1988
Eam1105I	GACNNNNNGTC	2 cut(s)	514, 777
EarI	CTCTTC	8 cut(s)	921, 1467, 1550, 1745, 1804, 1883, 1960, 1988
EciI	GGCGGA	8 cut(s)	290, 302, 413, 462, 519, 765, 1671, 2090
Ecl136II	GAGCTC	4 cut(s)	55, 132, 274, 298
Eco130I	CCWWGG	1 cut(s)	111
Eco24I	GRGCYC	6 cut(s)	57, 134, 276, 300, 633, 933
Eco31I	GGTCTC	4 cut(s)	372, 665, 1288, 1366
Eco32I	GATATC	1 cut(s)	1348
Eco47I	GGWCC	6 cut(s)	310, 373, 661, 1006, 1108, 1120
Eco47III	AGCGCT	1 cut(s)	95
Eco53kI	GAGCTC	4 cut(s)	55, 132, 274, 298
Eco72I	CACGTG	2 cut(s)	1105, 1237
Eco81I	CCTNAGG	1 cut(s)	1010
Eco88I	CYCGRG	2 cut(s)	932, 1133
EcoICRI	GAGCTC	4 cut(s)	55, 132, 274, 298
EcoO109I	RGGNCCY	2 cut(s)	1006, 1143
EcoRII	CCWGG	3 cut(s)	1065, 1127, 1971
EcoRV	GATATC	1 cut(s)	1348
EcoT14I	CCWWGG	1 cut(s)	111
EcoT22I	ATGCAT	1 cut(s)	1429
EcoT38I	GRGCYC	6 cut(s)	57, 134, 276, 300, 633, 933
ErhI	CCWWGG	1 cut(s)	111
Esp3I	CGTCTC	2 cut(s)	211, 2021
FaeI	CATG	2 cut(s)	1372, 1649
FaiI	YATR	5 cut(s)	263, 1370, 1647, 1673, 1835
FaqI	GGGAC	3 cut(s)	109, 113, 185
FatI	CATG	2 cut(s)	1368, 1645
FauI	CCCGC	3 cut(s)	397, 964, 1312
FblI	GTMKAC	1 cut(s)	781
FokI	GGATG	5 cut(s)	396, 629, 1004, 1817, 1829
FriOI	GRGCYC	6 cut(s)	57, 134, 276, 300, 633, 933
FspBI	CTAG	5 cut(s)	6, 870, 1247, 1299, 1947
GlaI	GCGC	8 cut(s)	28, 30, 70, 95, 533, 1052, 1227, 1735
GsaI	CCCAGC	2 cut(s)	100, 1380
HaeII	RGCGCY	2 cut(s)	97, 1054
HaeIII	GGCC	7 cut(s)	485, 636, 689, 1145, 1971, 2011, 2101
HgaI	GACGC	3 cut(s)	230, 586, 632
HhaI	GCGC	8 cut(s)	29, 31, 71, 96, 534, 1053, 1228, 1736
Hin1I	GRCGYC	4 cut(s)	140, 222, 597, 895
Hin1II	CATG	2 cut(s)	1372, 1649
Hin6I	GCGC	8 cut(s)	27, 29, 69, 94, 532, 1051, 1226, 1734
HinP1I	GCGC	8 cut(s)	27, 29, 69, 94, 532, 1051, 1226, 1734
HincII	GTYRAC	3 cut(s)	268, 782, 1935
HindII	GTYRAC	3 cut(s)	268, 782, 1935
HphI	GGTGA	6 cut(s)	364, 953, 1501, 1507, 1678, 1705
Hpy166II	GTNNAC	9 cut(s)	76, 153, 268, 727, 782, 1108, 1409, 1523, 1935
Hpy8I	GTNNAC	9 cut(s)	76, 153, 268, 727, 782, 1108, 1409, 1523, 1935
HpyCH4III	ACNGT	6 cut(s)	36, 80, 167, 701, 1318, 1520
HpyCH4IV	ACGT	9 cut(s)	44, 140, 324, 723, 895, 1104, 1236, 1411, 1716
HpyCH4V	TGCA	5 cut(s)	214, 1158, 1427, 1523, 2093
HpyF3I	CTNAG	4 cut(s)	159, 1010, 1569, 2016
HpySE526I	ACGT	9 cut(s)	44, 140, 324, 723, 895, 1104, 1236, 1411, 1716
Hsp92I	GRCGYC	4 cut(s)	140, 222, 597, 895
Hsp92II	CATG	2 cut(s)	1372, 1649
HspAI	GCGC	8 cut(s)	27, 29, 69, 94, 532, 1051, 1226, 1734
KroI	GCCGGC	1 cut(s)	1053
KroNI	GCCGGC	1 cut(s)	1055
LguI	GCTCTTC	1 cut(s)	921
Lsp1109I	GCAGC	3 cut(s)	198, 930, 1953
LweI	GCATC	3 cut(s)	418, 607, 1036
MaeI	CTAG	5 cut(s)	6, 870, 1247, 1299, 1947
MaeII	ACGT	9 cut(s)	44, 140, 324, 723, 895, 1104, 1236, 1411, 1716
MaeIII	GTNAC	3 cut(s)	80, 1071, 1613
MbiI	CCGCTC	1 cut(s)	1023
MflI	RGATCY	2 cut(s)	427, 655
MhlI	GDGCHC	9 cut(s)	44, 57, 134, 276, 300, 633, 933, 1316, 1525
MluCI	AATT	2 cut(s)	559, 1449
MlyI	GAGTC	8 cut(s)	95, 297, 563, 800, 1079, 1349, 1658, 1930
MmeI	TCCRAC	2 cut(s)	321, 1762
Mph1103I	ATGCAT	1 cut(s)	1429
MroNI	GCCGGC	1 cut(s)	1053
MseI	TTAA	4 cut(s)	120, 975, 984, 1530
MspA1I	CMGCKG	1 cut(s)	921
MspR9I	CCNGG	7 cut(s)	127, 633, 638, 786, 1067, 1129, 1973
MvaI	CCWGG	3 cut(s)	1067, 1129, 1973
NaeI	GCCGGC	1 cut(s)	1055
NciI	CCSGG	4 cut(s)	127, 633, 638, 786
NgoMIV	GCCGGC	1 cut(s)	1053
NheI	GCTAGC	1 cut(s)	869
NlaIII	CATG	2 cut(s)	1372, 1649
NlaIV	GGNNCC	8 cut(s)	284, 417, 630, 647, 1039, 1064, 1144, 1417
NmeAIII	GCCGAG	2 cut(s)	845, 1014
NmuCI	GTSAC	2 cut(s)	80, 1071
NruI	TCGCGA	3 cut(s)	232, 321, 438
NsiI	ATGCAT	1 cut(s)	1429
PaeR7I	CTCGAG	1 cut(s)	1133
PauI	GCGCGC	1 cut(s)	27
PciSI	GCTCTTC	1 cut(s)	921
PcsI	WCGNNNNNNNCGW	8 cut(s)	330, 335, 717, 720, 726, 735, 1601, 1607
PdiI	GCCGGC	1 cut(s)	1055
PfeI	GAWTC	2 cut(s)	227, 521
PflFI	GACNNNGTC	1 cut(s)	104
PfoI	TCCNGGA	1 cut(s)	125
PinAI	ACCGGT	1 cut(s)	1525
Ple19I	CGATCG	3 cut(s)	333, 742, 1395
PleI	GAGTC	8 cut(s)	95, 296, 562, 799, 1078, 1348, 1657, 1930
PmaCI	CACGTG	2 cut(s)	1105, 1237
PmlI	CACGTG	2 cut(s)	1105, 1237
PpsI	GAGTC	8 cut(s)	95, 296, 562, 799, 1078, 1348, 1657, 1930
Ppu21I	YACGTR	2 cut(s)	1105, 1237
PpuMI	RGGWCCY	1 cut(s)	1006
Psp124BI	GAGCTC	4 cut(s)	57, 134, 276, 300
Psp5II	RGGWCCY	1 cut(s)	1006
Psp6I	CCWGG	3 cut(s)	1065, 1127, 1971
PspCI	CACGTG	2 cut(s)	1105, 1237
PspFI	CCCAGC	2 cut(s)	96, 1376
PspGI	CCWGG	3 cut(s)	1065, 1127, 1971
PspN4I	GGNNCC	8 cut(s)	284, 417, 630, 647, 1039, 1064, 1144, 1417
PspPI	GGNCC	8 cut(s)	310, 373, 635, 661, 1006, 1108, 1120, 1143
PspPPI	RGGWCCY	1 cut(s)	1006
PsrI	GAACNNNNNNTAC	2 cut(s)	1399, 1431
PsuI	RGATCY	2 cut(s)	427, 655
PsyI	GACNNNGTC	1 cut(s)	104
PteI	GCGCGC	1 cut(s)	27
PvuI	CGATCG	3 cut(s)	333, 742, 1395
RruI	TCGCGA	3 cut(s)	232, 321, 438
RsaI	GTAC	1 cut(s)	1082
RsaNI	GTAC	1 cut(s)	1081
SacI	GAGCTC	4 cut(s)	57, 134, 276, 300
SalI	GTCGAC	1 cut(s)	780
SapI	GCTCTTC	1 cut(s)	921
SaqAI	TTAA	4 cut(s)	120, 975, 984, 1530
Sau96I	GGNCC	8 cut(s)	310, 373, 635, 661, 1006, 1108, 1120, 1143
SchI	GAGTC	8 cut(s)	95, 297, 563, 800, 1079, 1349, 1658, 1930
ScrFI	CCNGG	7 cut(s)	127, 633, 638, 786, 1067, 1129, 1973
SduI	GDGCHC	9 cut(s)	44, 57, 134, 276, 300, 633, 933, 1316, 1525
SfaNI	GCATC	3 cut(s)	418, 607, 1036
SfcI	CTRYAG	1 cut(s)	166
Sfr274I	CTCGAG	1 cut(s)	1133
SinI	GGWCC	6 cut(s)	310, 373, 661, 1006, 1108, 1120
SlaI	CTCGAG	1 cut(s)	1133
SmlI	CTYRAG	3 cut(s)	989, 1112, 1133
SmoI	CTYRAG	3 cut(s)	989, 1112, 1133
Sse9I	AATT	2 cut(s)	559, 1449
SspMI	CTAG	5 cut(s)	6, 870, 1247, 1299, 1947
SstI	GAGCTC	4 cut(s)	57, 134, 276, 300
StyD4I	CCNGG	7 cut(s)	125, 631, 636, 784, 1065, 1127, 1971
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	6 cut(s)	36, 80, 167, 701, 1318, 1520
TaiI	ACGT	9 cut(s)	47, 143, 327, 726, 898, 1107, 1239, 1414, 1719
TaqII	GACCGA	2 cut(s)	390, 683
TasI	AATT	2 cut(s)	559, 1449
TfiI	GAWTC	2 cut(s)	227, 521
Tru1I	TTAA	4 cut(s)	120, 975, 984, 1530
Tru9I	TTAA	4 cut(s)	120, 975, 984, 1530
TscAI	CASTG	3 cut(s)	160, 1323, 1525
TseFI	GTSAC	2 cut(s)	80, 1071
TseI	GCWGC	3 cut(s)	211, 918, 1941
Tsp45I	GTSAC	2 cut(s)	80, 1071
TspDTI	ATGAA	2 cut(s)	1292, 1772
TspGWI	ACGGA	5 cut(s)	94, 629, 1030, 1715, 1925
TspRI	CASTG	3 cut(s)	160, 1323, 1525
Tth111I	GACNNNGTC	1 cut(s)	104
VneI	GTGCAC	1 cut(s)	1521
VpaK11BI	GGWCC	6 cut(s)	310, 373, 661, 1006, 1108, 1120
XbaI	TCTAGA	1 cut(s)	1246
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1979
XhoI	CTCGAG	1 cut(s)	1133
XmiI	GTMKAC	1 cut(s)	781
XspI	CTAG	5 cut(s)	6, 870, 1247, 1299, 1947
ZraI	GACGTC	2 cut(s)	141, 896
Zsp2I	ATGCAT	1 cut(s)	1429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.