Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0006248

Physical Location & Seq

Genomic Coordinates Forward (+)

1434896 .. 1437102

Gene Structure 2207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1018200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGTTAATTTACAGGGAGAAAACCGCTCTATCAATTGGACTGGAGGTCAAGGATTGCATCTACACAGAGGATTGCATCCACATGTTCTTCCGCGACCTCCTCCTCCTATTCAACAACGCCATCGTCTTCCGCAATAACTCTCCGGAGCACAACGCAGCTCGAGAGCTCCGCTCCATTGTGCTAAAGGAAATGAACGACCAGCTCCCGAACCCACAACCCGCGACCAGAACAGTAACATCTAACGTGCCCAAGATCAAAACCAAAGCTCCCAAGCGTGGTTCTGTCAATGCACTATCAGAAGGCGGTGAGAAAGCAAAGGTGGCGAATGAGAAGAAGACGGATGGTGCTGCATCTGTGAAGGTTGAGGACAAGGGGATTAGGAGGAGGAGGACACAAGAAAGAGGCGGGCGGAGAGGGACAAGCACGAGGGGCAGGAGTGCAGCGAAGCCGACGAAGCCGCACGAGTATGGCGTCAATGAACTCCGTTCGCATGACGGTTTAGACGCGTTGGAAGCGGAGAAGGAGAAGAAAGAAAACAGGAGGAAGAAGCAAGGCGCAGCGAGGTTCTTGAAGCGAATGAAGCAGAACTCACCGAGCACTGAAGTGAAGAAGGAGACATCGGATGGTTCTGAGGATGATAGCGATGAGAGCGGGGACGAGAAGAAGAAGAAGAAGAAGAAGCCGACGACAAGGGGTAGGAAGAAGCCGGAGGTTGAGAGGAATGAGAGGGTGACGCGGAGTTCAACAGGAAGCGGGGGAGGGAGGGGAGGGGGAAGAAGGTGTCAGGAGAGGAGAACAATGGGAGGAAAAGGAGAGGGGTCGGGAGGCCACCGAAGAGGCCGGAGACTGTGGCGGCAGAAGCGGGGAGTAGGAAGAGAGGGAGAGAGAATGGGGAGGCTGATCAGGTGGGGAGTGCAGGGAGGCGGAGAAAGCGTACAAGGAGGTGAATGCGGCCATTGTTGTAGCTGTAAATTATTTTTGGCATGGTTTGGGTTAATTTCTGGTCTTGTTTTGTTGCTAATGAAAGGTTTTTACAGTCCTTTTTTAACCTTTTTACCCAAGAGCGGTCAAAAGAATTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain Myb_DNA-binding

Protein Analysis

361

Amino Acids

40.19

Weight (kDa)

10.23

Isoelectric Point (pI)

51.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44430 AT3G60110
fragaria_vesca	FvH4_3g44130 FvH4_3g44130 FvH4_3g44130
malus_domestica	MD03G1017000.v1.1 MD11G1017600.v1.1 MD11G1018000.v1.1 MD11G1018200.v1.1
prunus_persica	Prupe.6G015400_v2.0.a1
pyrus_communis	pycom03g01460 pycom03g01470 pycom11g01250 pycom11g01320
rosa_chinensis	RchiOBHm_Chr5g0080461
rosa_laevigata	RLG00000036858
rosa_multiflora	Rmu_co8095392.1_g000001 Rmu_sc0020711.1_g000001 Rmu_sc0025164.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002940
rosa_rugosa	Rorug05G0469000 Rorug05G0469100
rosa_samantha	Rh5AG522700 Rh5BG544300 Rh5CG567900 Rh5DG554600
rosa_wichuraiana	Rw0G023230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	4 cut(s)	26, 171, 651, 1065
AccII	CGCG	4 cut(s)	93, 221, 506, 736
AccIII	TCCGGA	1 cut(s)	142
AcoI	YGGCCR	1 cut(s)	952
AcuI	CTGAAG	1 cut(s)	621
AcyI	GRCGYC	1 cut(s)	471
AfaI	GTAC	1 cut(s)	936
AfiI	CCNNNNNNNGG	2 cut(s)	275, 1064
AflIII	ACRYGT	2 cut(s)	81, 504
AgsI	TTSAA	3 cut(s)	112, 571, 744
AhdI	GACNNNNNGTC	1 cut(s)	44
AleI	CACNNNNGTG	1 cut(s)	602
AluBI	AGCT	5 cut(s)	158, 166, 202, 266, 966
AluI	AGCT	5 cut(s)	158, 166, 202, 266, 966
Alw21I	GWGCWC	3 cut(s)	150, 168, 599
Alw26I	GTCTC	2 cut(s)	608, 838
Ama87I	CYCGRG	1 cut(s)	159
Aor13HI	TCCGGA	1 cut(s)	142
AoxI	GGCC	3 cut(s)	826, 838, 952
ApeKI	GCWGC	4 cut(s)	155, 347, 440, 557
AspLEI	GCGC	1 cut(s)	557
AsuHPI	GGTGA	4 cut(s)	317, 582, 742, 956
AvaI	CYCGRG	1 cut(s)	159
BaeGI	GKGCMC	1 cut(s)	249
BanII	GRGCYC	1 cut(s)	168
BauI	CACGAG	2 cut(s)	424, 461
BbsI	GAAGAC	2 cut(s)	118, 341
Bbv12I	GWGCWC	3 cut(s)	150, 168, 599
BbvI	GCAGC	4 cut(s)	167, 334, 452, 569
BccI	CCATC	3 cut(s)	128, 335, 617
BclI	TGATCA	1 cut(s)	900
BcoDI	GTCTC	2 cut(s)	608, 838
BfaI	CTAG	1 cut(s)	1081
BisI	GCNGC	7 cut(s)	156, 348, 441, 458, 558, 854, 952
BlsI	GCNGC	7 cut(s)	157, 349, 442, 459, 559, 855, 953
BmeRI	GACNNNNNGTC	1 cut(s)	44
BmeT110I	CYCGRG	1 cut(s)	159
BmsI	GCATC	3 cut(s)	66, 84, 359
BpiI	GAAGAC	2 cut(s)	118, 341
BplI	GAGNNNNNCTC	2 cut(s)	155, 187
BpmI	CTGGAG	1 cut(s)	62
BsaHI	GRCGYC	1 cut(s)	471
BsaWI	WCCGGW	1 cut(s)	142
BsaXI	ACNNNNNCTCC	4 cut(s)	250, 280, 918, 948
Bsc4I	CCNNNNNNNGG	2 cut(s)	275, 1064
Bse1I	ACTGG	1 cut(s)	45
BseAI	TCCGGA	1 cut(s)	142
BseGI	GGATG	4 cut(s)	75, 346, 628, 640
BseLI	CCNNNNNNNGG	2 cut(s)	275, 1064
BseMII	CTCAG	1 cut(s)	621
BseNI	ACTGG	1 cut(s)	45
BseRI	GAGGAG	5 cut(s)	89, 92, 397, 400, 805
BseSI	GKGCMC	1 cut(s)	249
BseXI	GCAGC	4 cut(s)	167, 334, 452, 569
BsgI	GTGCAG	2 cut(s)	459, 935
Bsh1236I	CGCG	4 cut(s)	93, 221, 506, 736
BshFI	GGCC	3 cut(s)	828, 840, 954
BsiHKAI	GWGCWC	3 cut(s)	150, 168, 599
BsiHKCI	CYCGRG	1 cut(s)	159
BsiSI	CCGG	3 cut(s)	143, 707, 841
BslFI	GGGAC	2 cut(s)	430, 668
BslI	CCNNNNNNNGG	2 cut(s)	275, 1064
BsmAI	GTCTC	2 cut(s)	608, 838
BsmFI	GGGAC	2 cut(s)	430, 668
BsmI	GAATGC	1 cut(s)	953
BsnI	GGCC	3 cut(s)	828, 840, 954
BsoBI	CYCGRG	1 cut(s)	159
Bsp1286I	GDGCHC	4 cut(s)	150, 168, 249, 599
Bsp13I	TCCGGA	1 cut(s)	142
Bsp143I	GATC	2 cut(s)	252, 900
BspANI	GGCC	3 cut(s)	828, 840, 954
BspCNI	CTCAG	1 cut(s)	622
BspEI	TCCGGA	1 cut(s)	142
BspFNI	CGCG	4 cut(s)	93, 221, 506, 736
BsrBI	CCGCTC	4 cut(s)	26, 171, 651, 1065
BsrI	ACTGG	1 cut(s)	45
BssMI	GATC	2 cut(s)	252, 900
BssNI	GRCGYC	1 cut(s)	471
BssSI	CACGAG	2 cut(s)	424, 461
Bst2BI	CACGAG	2 cut(s)	424, 461
Bst4CI	ACNGT	4 cut(s)	232, 497, 849, 1037
Bst6I	CTCTTC	2 cut(s)	829, 868
BstACI	GRCGYC	1 cut(s)	471
BstC8I	GCNNGC	1 cut(s)	407
BstDEI	CTNAG	1 cut(s)	630
BstF5I	GGATG	4 cut(s)	75, 346, 628, 640
BstFNI	CGCG	4 cut(s)	93, 221, 506, 736
BstHHI	GCGC	1 cut(s)	557
BstKTI	GATC	2 cut(s)	255, 903
BstMAI	GTCTC	2 cut(s)	608, 838
BstMBI	GATC	2 cut(s)	252, 900
BstMWI	GCNNNNNNNGC	8 cut(s)	320, 429, 454, 512, 580, 648, 859, 930
BstNSI	RCATGY	1 cut(s)	85
BstSLI	GKGCMC	1 cut(s)	249
BstUI	CGCG	4 cut(s)	93, 221, 506, 736
BstV1I	GCAGC	4 cut(s)	167, 334, 452, 569
BstV2I	GAAGAC	2 cut(s)	118, 341
BsuRI	GGCC	3 cut(s)	828, 840, 954
BtgZI	GCGATG	1 cut(s)	657
BtsCI	GGATG	4 cut(s)	75, 346, 628, 640
BtsIMutI	CAGTG	1 cut(s)	597
Cac8I	GCNNGC	1 cut(s)	407
CfoI	GCGC	1 cut(s)	557
CseI	GACGC	3 cut(s)	460, 512, 742
Csp6I	GTAC	1 cut(s)	935
CviAII	CATG	3 cut(s)	82, 491, 984
CviQI	GTAC	1 cut(s)	935
DdeI	CTNAG	1 cut(s)	630
DpnI	GATC	2 cut(s)	254, 902
DpnII	GATC	2 cut(s)	252, 900
DriI	GACNNNNNGTC	1 cut(s)	44
EaeI	YGGCCR	1 cut(s)	952
Eam1104I	CTCTTC	2 cut(s)	829, 868
Eam1105I	GACNNNNNGTC	1 cut(s)	44
EarI	CTCTTC	2 cut(s)	829, 868
EciI	GGCGGA	2 cut(s)	424, 939
Ecl136II	GAGCTC	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	168
Eco53kI	GAGCTC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	621
Eco88I	CYCGRG	1 cut(s)	159
EcoICRI	GAGCTC	1 cut(s)	166
EcoT38I	GRGCYC	1 cut(s)	168
FaeI	CATG	3 cut(s)	85, 494, 987
FaiI	YATR	4 cut(s)	83, 468, 492, 985
FaqI	GGGAC	2 cut(s)	430, 668
FatI	CATG	3 cut(s)	81, 490, 983
FauI	CCCGC	5 cut(s)	226, 398, 644, 746, 855
FbaI	TGATCA	1 cut(s)	900
Fnu4HI	GCNGC	7 cut(s)	156, 348, 441, 458, 558, 854, 952
FokI	GGATG	4 cut(s)	62, 353, 635, 647
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	7 cut(s)	156, 348, 441, 458, 558, 854, 952
FspBI	CTAG	1 cut(s)	1081
GlaI	GCGC	1 cut(s)	556
GluI	GCNGC	7 cut(s)	156, 348, 441, 458, 558, 854, 952
GsuI	CTGGAG	1 cut(s)	62
HaeIII	GGCC	3 cut(s)	828, 840, 954
HapII	CCGG	3 cut(s)	143, 707, 841
HgaI	GACGC	3 cut(s)	460, 512, 742
HhaI	GCGC	1 cut(s)	557
Hin1I	GRCGYC	1 cut(s)	471
Hin1II	CATG	3 cut(s)	85, 494, 987
Hin6I	GCGC	1 cut(s)	555
HinP1I	GCGC	1 cut(s)	555
HpaII	CCGG	3 cut(s)	143, 707, 841
HphI	GGTGA	4 cut(s)	317, 582, 742, 956
Hpy188I	TCNGA	3 cut(s)	298, 622, 631
Hpy188III	TCNNGA	6 cut(s)	143, 161, 205, 568, 785, 822
Hpy99I	CGWCG	2 cut(s)	454, 688
HpyAV	CCTTC	5 cut(s)	293, 352, 514, 604, 771
HpyCH4III	ACNGT	4 cut(s)	232, 497, 849, 1037
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	6 cut(s)	57, 75, 290, 350, 440, 916
HpyF10VI	GCNNNNNNNGC	8 cut(s)	320, 429, 454, 512, 580, 648, 859, 930
HpyF3I	CTNAG	1 cut(s)	630
HpySE526I	ACGT	1 cut(s)	243
Hsp92I	GRCGYC	1 cut(s)	471
Hsp92II	CATG	3 cut(s)	85, 494, 987
HspAI	GCGC	1 cut(s)	555
Kpn2I	TCCGGA	1 cut(s)	142
Ksp22I	TGATCA	1 cut(s)	900
Kzo9I	GATC	2 cut(s)	252, 900
LmnI	GCTCC	5 cut(s)	145, 171, 176, 207, 271
Lsp1109I	GCAGC	4 cut(s)	167, 334, 452, 569
LweI	GCATC	3 cut(s)	66, 84, 359
MaeI	CTAG	1 cut(s)	1081
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	2 cut(s)	232, 730
MalI	GATC	2 cut(s)	254, 902
MbiI	CCGCTC	4 cut(s)	26, 171, 651, 1065
MboI	GATC	2 cut(s)	252, 900
MfeI	CAATTG	1 cut(s)	33
MhlI	GDGCHC	4 cut(s)	150, 168, 249, 599
MluCI	AATT	5 cut(s)	6, 33, 971, 996, 1075
MluI	ACGCGT	1 cut(s)	504
MmeI	TCCRAC	1 cut(s)	489
MroI	TCCGGA	1 cut(s)	142
MseI	TTAA	3 cut(s)	5, 995, 1046
MslI	CAYNNNNRTG	3 cut(s)	80, 465, 602
MspI	CCGG	3 cut(s)	143, 707, 841
MunI	CAATTG	1 cut(s)	33
Mva1269I	GAATGC	1 cut(s)	953
MvnI	CGCG	4 cut(s)	93, 221, 506, 736
MwoI	GCNNNNNNNGC	8 cut(s)	320, 429, 454, 512, 580, 648, 859, 930
NdeII	GATC	2 cut(s)	252, 900
NlaIII	CATG	3 cut(s)	85, 494, 987
NmuCI	GTSAC	1 cut(s)	730
NspI	RCATGY	1 cut(s)	85
OliI	CACNNNNGTG	1 cut(s)	602
PaeR7I	CTCGAG	1 cut(s)	159
PciI	ACATGT	1 cut(s)	81
PcsI	WCGNNNNNNNCGW	1 cut(s)	468
PctI	GAATGC	1 cut(s)	953
PkrI	GCNGC	7 cut(s)	157, 349, 442, 459, 559, 855, 953
PscI	ACATGT	1 cut(s)	81
Psp124BI	GAGCTC	1 cut(s)	168
RsaI	GTAC	1 cut(s)	936
RsaNI	GTAC	1 cut(s)	935
RseI	CAYNNNNRTG	3 cut(s)	80, 465, 602
SacI	GAGCTC	1 cut(s)	168
SaqAI	TTAA	3 cut(s)	5, 995, 1046
SatI	GCNGC	7 cut(s)	156, 348, 441, 458, 558, 854, 952
Sau3AI	GATC	2 cut(s)	252, 900
SduI	GDGCHC	4 cut(s)	150, 168, 249, 599
SfaNI	GCATC	3 cut(s)	66, 84, 359
Sfr274I	CTCGAG	1 cut(s)	159
SlaI	CTCGAG	1 cut(s)	159
SmiMI	CAYNNNNRTG	3 cut(s)	80, 465, 602
SmlI	CTYRAG	1 cut(s)	159
SmoI	CTYRAG	1 cut(s)	159
Sse9I	AATT	5 cut(s)	6, 33, 971, 996, 1075
SspMI	CTAG	1 cut(s)	1081
SstI	GAGCTC	1 cut(s)	168
TaaI	ACNGT	4 cut(s)	232, 497, 849, 1037
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	1 cut(s)	160
TasI	AATT	5 cut(s)	6, 33, 971, 996, 1075
TauI	GCSGC	3 cut(s)	460, 856, 954
Tru1I	TTAA	3 cut(s)	5, 995, 1046
Tru9I	TTAA	3 cut(s)	5, 995, 1046
TscAI	CASTG	1 cut(s)	604
TseFI	GTSAC	1 cut(s)	730
TseI	GCWGC	4 cut(s)	155, 347, 440, 557
Tsp45I	GTSAC	1 cut(s)	730
TspDTI	ATGAA	4 cut(s)	206, 492, 593, 1037
TspGWI	ACGGA	2 cut(s)	353, 473
TspRI	CASTG	1 cut(s)	604
XceI	RCATGY	1 cut(s)	85
XhoI	CTCGAG	1 cut(s)	159
XspI	CTAG	1 cut(s)	1081

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.