Bromodomain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G44430 AT3G60110 |
| fragaria_vesca | FvH4_3g44130 FvH4_3g44130 FvH4_3g44130 |
| malus_domestica | MD03G1017000.v1.1 MD11G1017600.v1.1 MD11G1018000.v1.1 MD11G1018200.v1.1 |
| prunus_persica | Prupe.6G015400_v2.0.a1 |
| pyrus_communis | pycom03g01460 pycom03g01470 pycom11g01250 pycom11g01320 |
| rosa_chinensis | RchiOBHm_Chr5g0080461 |
| rosa_laevigata | RLG00000036858 |
| rosa_multiflora | Rmu_co8095392.1_g000001 Rmu_sc0020711.1_g000001 Rmu_sc0025164.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00002940 |
| rosa_rugosa | Rorug05G0469000 Rorug05G0469100 |
| rosa_samantha | Rh5AG522700 Rh5BG544300 Rh5CG567900 Rh5DG554600 |
| rosa_wichuraiana | Rw0G023230 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 862 |
| Acc16I | TGCGCA | 1 cut(s) | 1217 |
| Acc36I | ACCTGC | 1 cut(s) | 1119 |
| AccB1I | GGYRCC | 2 cut(s) | 27, 83 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 93 |
| AccBSI | CCGCTC | 3 cut(s) | 24, 361, 1023 |
| AccI | GTMKAC | 1 cut(s) | 1146 |
| AccII | CGCG | 7 cut(s) | 303, 495, 651, 1176, 1307, 1570, 1700 |
| AccIII | TCCGGA | 2 cut(s) | 258, 1011 |
| AclWI | GGATC | 4 cut(s) | 429, 498, 654, 1087 |
| AcyI | GRCGYC | 2 cut(s) | 803, 859 |
| AfaI | GTAC | 1 cut(s) | 1353 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 93, 289, 963, 1117, 1965 |
| AgsI | TTSAA | 8 cut(s) | 331, 370, 511, 525, 1124, 1195, 1487, 1717 |
| AhlI | ACTAGT | 1 cut(s) | 58 |
| AjiI | CACGTC | 1 cut(s) | 823 |
| AjnI | CCWGG | 2 cut(s) | 1065, 1127 |
| AleI | CACNNNNGTG | 1 cut(s) | 1748 |
| Alw21I | GWGCWC | 6 cut(s) | 131, 258, 282, 1236, 1745, 1766 |
| Alw26I | GTCTC | 3 cut(s) | 168, 1948, 1967 |
| AlwI | GGATC | 4 cut(s) | 429, 498, 654, 1087 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1985 |
| Ama87I | CYCGRG | 1 cut(s) | 6 |
| Aor13HI | TCCGGA | 2 cut(s) | 258, 1011 |
| AoxI | GGCC | 7 cut(s) | 3, 238, 384, 927, 1556, 1967, 2051 |
| ApeKI | GCWGC | 4 cut(s) | 915, 1241, 1578, 1581 |
| AspLEI | GCGC | 5 cut(s) | 68, 495, 1218, 1700, 2064 |
| AsuC2I | CCSGG | 5 cut(s) | 7, 8, 591, 634, 1870 |
| AsuHPI | GGTGA | 9 cut(s) | 346, 429, 722, 775, 890, 947, 1796, 1876, 2033 |
| AsuII | TTCGAA | 1 cut(s) | 622 |
| AvaI | CYCGRG | 1 cut(s) | 6 |
| AvaII | GGWCC | 7 cut(s) | 115, 292, 593, 636, 1108, 1282, 1539 |
| BaeGI | GKGCMC | 2 cut(s) | 30, 41 |
| BanI | GGYRCC | 2 cut(s) | 27, 83 |
| BanII | GRGCYC | 5 cut(s) | 131, 258, 282, 591, 1766 |
| BbsI | GAAGAC | 4 cut(s) | 480, 699, 1688, 1841 |
| Bbv12I | GWGCWC | 6 cut(s) | 131, 258, 282, 1236, 1745, 1766 |
| BbvI | GCAGC | 4 cut(s) | 927, 1253, 1590, 1593 |
| BccI | CCATC | 3 cut(s) | 396, 1634, 2029 |
| BceAI | ACGGC | 4 cut(s) | 53, 97, 979, 1187 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 555, 589 |
| BciT130I | CCWGG | 2 cut(s) | 1067, 1129 |
| BclI | TGATCA | 2 cut(s) | 999, 2029 |
| BcnI | CCSGG | 5 cut(s) | 7, 8, 591, 634, 1870 |
| BcoDI | GTCTC | 3 cut(s) | 168, 1948, 1967 |
| BcuI | ACTAGT | 1 cut(s) | 58 |
| BfaI | CTAG | 3 cut(s) | 59, 428, 2055 |
| BfmI | CTRYAG | 1 cut(s) | 169 |
| BfuAI | ACCTGC | 1 cut(s) | 1119 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 537 |
| BisI | GCNGC | 7 cut(s) | 412, 916, 919, 1242, 1579, 1582, 1701 |
| BlsI | GCNGC | 7 cut(s) | 413, 917, 920, 1243, 1580, 1583, 1702 |
| Bme1390I | CCNGG | 7 cut(s) | 7, 8, 591, 634, 1067, 1129, 1870 |
| Bme18I | GGWCC | 7 cut(s) | 115, 292, 593, 636, 1108, 1282, 1539 |
| BmeT110I | CYCGRG | 1 cut(s) | 6 |
| BmgBI | CACGTC | 1 cut(s) | 823 |
| BmiI | GGNNCC | 8 cut(s) | 29, 85, 263, 588, 631, 1039, 1064, 1541 |
| BmrFI | CCNGG | 7 cut(s) | 7, 8, 591, 634, 1067, 1129, 1870 |
| BmrI | ACTGGG | 1 cut(s) | 1890 |
| BmsI | GCATC | 1 cut(s) | 1036 |
| BmuI | ACTGGG | 1 cut(s) | 1890 |
| BpiI | GAAGAC | 4 cut(s) | 480, 699, 1688, 1841 |
| BpmI | CTGGAG | 1 cut(s) | 1212 |
| Bpu10I | CCTNAGC | 2 cut(s) | 162, 975 |
| Bpu14I | TTCGAA | 1 cut(s) | 622 |
| BpuEI | CTTGAG | 1 cut(s) | 1230 |
| BpuMI | CCSGG | 5 cut(s) | 7, 8, 591, 634, 1870 |
| Bsa29I | ATCGAT | 1 cut(s) | 1311 |
| BsaBI | GATNNNNATC | 1 cut(s) | 205 |
| BsaHI | GRCGYC | 2 cut(s) | 803, 859 |
| BsaI | GGTCTC | 2 cut(s) | 1948, 1967 |
| BsaJI | CCNNGG | 6 cut(s) | 6, 32, 79, 108, 930, 1559 |
| BsaWI | WCCGGW | 6 cut(s) | 258, 439, 595, 643, 1011, 1843 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 93, 289, 963, 1117, 1965 |
| Bse118I | RCCGGY | 1 cut(s) | 452 |
| Bse1I | ACTGG | 2 cut(s) | 631, 1885 |
| Bse3DI | GCAATG | 1 cut(s) | 2023 |
| Bse8I | GATNNNNATC | 1 cut(s) | 205 |
| BseAI | TCCGGA | 2 cut(s) | 258, 1011 |
| BseBI | CCWGG | 2 cut(s) | 1067, 1129 |
| BseCI | ATCGAT | 1 cut(s) | 1311 |
| BseDI | CCNNGG | 6 cut(s) | 6, 32, 79, 108, 930, 1559 |
| BseGI | GGATG | 3 cut(s) | 388, 1008, 1774 |
| BseJI | GATNNNNATC | 1 cut(s) | 205 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 93, 289, 963, 1117, 1965 |
| BseMI | GCAATG | 1 cut(s) | 2023 |
| BseMII | CTCAG | 1 cut(s) | 176 |
| BseNI | ACTGG | 2 cut(s) | 631, 1885 |
| BseSI | GKGCMC | 2 cut(s) | 30, 41 |
| BseXI | GCAGC | 4 cut(s) | 927, 1253, 1590, 1593 |
| BseYI | CCCAGC | 2 cut(s) | 93, 1385 |
| BsgI | GTGCAG | 2 cut(s) | 845, 2064 |
| Bsh1236I | CGCG | 7 cut(s) | 303, 495, 651, 1176, 1307, 1570, 1700 |
| Bsh1285I | CGRYCG | 2 cut(s) | 315, 1311 |
| BshFI | GGCC | 7 cut(s) | 5, 240, 386, 929, 1558, 1969, 2053 |
| BshNI | GGYRCC | 2 cut(s) | 27, 83 |
| BshVI | ATCGAT | 1 cut(s) | 1311 |
| BsiEI | CGRYCG | 2 cut(s) | 315, 1311 |
| BsiHKAI | GWGCWC | 6 cut(s) | 131, 258, 282, 1236, 1745, 1766 |
| BsiHKCI | CYCGRG | 1 cut(s) | 6 |
| BslFI | GGGAC | 1 cut(s) | 110 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 93, 289, 963, 1117, 1965 |
| BsmAI | GTCTC | 3 cut(s) | 168, 1948, 1967 |
| BsmFI | GGGAC | 1 cut(s) | 110 |
| BsnI | GGCC | 7 cut(s) | 5, 240, 386, 929, 1558, 1969, 2053 |
| Bso31I | GGTCTC | 2 cut(s) | 1948, 1967 |
| BsoBI | CYCGRG | 1 cut(s) | 6 |
| Bsp119I | TTCGAA | 1 cut(s) | 622 |
| Bsp1286I | GDGCHC | 9 cut(s) | 30, 41, 131, 258, 282, 591, 1236, 1745, 1766 |
| Bsp13I | TCCGGA | 2 cut(s) | 258, 1011 |
| Bsp19I | CCATGG | 2 cut(s) | 32, 108 |
| Bsp68I | TCGCGA | 2 cut(s) | 303, 651 |
| BspANI | GGCC | 7 cut(s) | 5, 240, 386, 929, 1558, 1969, 2053 |
| BspCNI | CTCAG | 1 cut(s) | 175 |
| BspDI | ATCGAT | 1 cut(s) | 1311 |
| BspEI | TCCGGA | 2 cut(s) | 258, 1011 |
| BspFNI | CGCG | 7 cut(s) | 303, 495, 651, 1176, 1307, 1570, 1700 |
| BspLI | GGNNCC | 8 cut(s) | 29, 85, 263, 588, 631, 1039, 1064, 1541 |
| BspMI | ACCTGC | 1 cut(s) | 1119 |
| BspPI | GGATC | 4 cut(s) | 429, 498, 654, 1087 |
| BspT104I | TTCGAA | 1 cut(s) | 622 |
| BspT107I | GGYRCC | 2 cut(s) | 27, 83 |
| BspTNI | GGTCTC | 2 cut(s) | 1948, 1967 |
| BsrBI | CCGCTC | 3 cut(s) | 24, 361, 1023 |
| BsrDI | GCAATG | 1 cut(s) | 2023 |
| BsrFI | RCCGGY | 1 cut(s) | 452 |
| BsrI | ACTGG | 2 cut(s) | 631, 1885 |
| BssAI | RCCGGY | 1 cut(s) | 452 |
| BssECI | CCNNGG | 6 cut(s) | 6, 32, 79, 108, 930, 1559 |
| BssNI | GRCGYC | 2 cut(s) | 803, 859 |
| BssT1I | CCWWGG | 2 cut(s) | 32, 108 |
| Bst2UI | CCWGG | 2 cut(s) | 1067, 1129 |
| Bst4CI | ACNGT | 6 cut(s) | 170, 299, 668, 718, 1318, 1747 |
| Bst6I | CTCTTC | 7 cut(s) | 332, 576, 842, 918, 1482, 1712, 1748 |
| BstACI | GRCGYC | 2 cut(s) | 803, 859 |
| BstBI | TTCGAA | 1 cut(s) | 622 |
| BstC8I | GCNNGC | 7 cut(s) | 26, 454, 838, 1025, 1391, 1556, 1608 |
| BstDEI | CTNAG | 3 cut(s) | 162, 975, 1628 |
| BstDSI | CCRYGG | 3 cut(s) | 32, 79, 108 |
| BstEII | GGTNACC | 1 cut(s) | 1864 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1115 |
| BstF5I | GGATG | 3 cut(s) | 388, 1008, 1774 |
| BstFNI | CGCG | 7 cut(s) | 303, 495, 651, 1176, 1307, 1570, 1700 |
| BstHHI | GCGC | 5 cut(s) | 68, 495, 1218, 1700, 2064 |
| BstMAI | GTCTC | 3 cut(s) | 168, 1948, 1967 |
| BstMCI | CGRYCG | 2 cut(s) | 315, 1311 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 90, 537, 2059 |
| BstNI | CCWGG | 2 cut(s) | 1067, 1129 |
| BstNSI | RCATGY | 1 cut(s) | 1610 |
| BstPI | GGTNACC | 1 cut(s) | 1864 |
| BstSCI | CCNGG | 7 cut(s) | 5, 6, 589, 632, 1065, 1127, 1868 |
| BstSFI | CTRYAG | 1 cut(s) | 169 |
| BstSLI | GKGCMC | 2 cut(s) | 30, 41 |
| BstUI | CGCG | 7 cut(s) | 303, 495, 651, 1176, 1307, 1570, 1700 |
| BstV1I | GCAGC | 4 cut(s) | 927, 1253, 1590, 1593 |
| BstV2I | GAAGAC | 4 cut(s) | 480, 699, 1688, 1841 |
| Bsu15I | ATCGAT | 1 cut(s) | 1311 |
| BsuRI | GGCC | 7 cut(s) | 5, 240, 386, 929, 1558, 1969, 2053 |
| BsuTUI | ATCGAT | 1 cut(s) | 1311 |
| BtgI | CCRYGG | 3 cut(s) | 32, 79, 108 |
| BtrI | CACGTC | 1 cut(s) | 823 |
| BtsCI | GGATG | 3 cut(s) | 388, 1008, 1774 |
| BtsI | GCAGTG | 2 cut(s) | 156, 1933 |
| BtsIMutI | CAGTG | 2 cut(s) | 156, 1933 |
| BtuMI | TCGCGA | 2 cut(s) | 303, 651 |
| BveI | ACCTGC | 1 cut(s) | 1119 |
| Cac8I | GCNNGC | 7 cut(s) | 26, 454, 838, 1025, 1391, 1556, 1608 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1985 |
| CfoI | GCGC | 5 cut(s) | 68, 495, 1218, 1700, 2064 |
| Cfr10I | RCCGGY | 1 cut(s) | 452 |
| Cfr9I | CCCGGG | 1 cut(s) | 6 |
| ClaI | ATCGAT | 1 cut(s) | 1311 |
| CpoI | CGGWCCG | 2 cut(s) | 593, 636 |
| CseI | GACGC | 3 cut(s) | 547, 792, 1040 |
| Csp6I | GTAC | 1 cut(s) | 1352 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1417, 1452 |
| CspI | CGGWCCG | 2 cut(s) | 593, 636 |
| CviQI | GTAC | 1 cut(s) | 1352 |
| DdeI | CTNAG | 3 cut(s) | 162, 975, 1628 |
| Eam1104I | CTCTTC | 7 cut(s) | 332, 576, 842, 918, 1482, 1712, 1748 |
| EarI | CTCTTC | 7 cut(s) | 332, 576, 842, 918, 1482, 1712, 1748 |
| EciI | GGCGGA | 5 cut(s) | 272, 395, 429, 885, 1455 |
| Ecl136II | GAGCTC | 4 cut(s) | 129, 256, 280, 1764 |
| Eco130I | CCWWGG | 2 cut(s) | 32, 108 |
| Eco147I | AGGCCT | 1 cut(s) | 2053 |
| Eco24I | GRGCYC | 5 cut(s) | 131, 258, 282, 591, 1766 |
| Eco31I | GGTCTC | 2 cut(s) | 1948, 1967 |
| Eco47I | GGWCC | 7 cut(s) | 115, 292, 593, 636, 1108, 1282, 1539 |
| Eco53kI | GAGCTC | 4 cut(s) | 129, 256, 280, 1764 |
| Eco88I | CYCGRG | 1 cut(s) | 6 |
| Eco91I | GGTNACC | 1 cut(s) | 1864 |
| EcoICRI | GAGCTC | 4 cut(s) | 129, 256, 280, 1764 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1115 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1539 |
| EcoO65I | GGTNACC | 1 cut(s) | 1864 |
| EcoRII | CCWGG | 2 cut(s) | 1065, 1127 |
| EcoT14I | CCWWGG | 2 cut(s) | 32, 108 |
| EcoT38I | GRGCYC | 5 cut(s) | 131, 258, 282, 591, 1766 |
| ErhI | CCWWGG | 2 cut(s) | 32, 108 |
| FaqI | GGGAC | 1 cut(s) | 110 |
| FauI | CCCGC | 5 cut(s) | 17, 771, 958, 1312, 1547 |
| FbaI | TGATCA | 2 cut(s) | 999, 2029 |
| FblI | GTMKAC | 1 cut(s) | 1146 |
| Fnu4HI | GCNGC | 7 cut(s) | 412, 916, 919, 1242, 1579, 1582, 1701 |
| FokI | GGATG | 3 cut(s) | 375, 995, 1781 |
| FriOI | GRGCYC | 5 cut(s) | 131, 258, 282, 591, 1766 |
| Fsp4HI | GCNGC | 7 cut(s) | 412, 916, 919, 1242, 1579, 1582, 1701 |
| FspBI | CTAG | 3 cut(s) | 59, 428, 2055 |
| FspI | TGCGCA | 1 cut(s) | 1217 |
| GlaI | GCGC | 5 cut(s) | 67, 494, 1217, 1699, 2063 |
| GluI | GCNGC | 7 cut(s) | 412, 916, 919, 1242, 1579, 1582, 1701 |
| GsaI | CCCAGC | 2 cut(s) | 97, 1389 |
| GsuI | CTGGAG | 1 cut(s) | 1212 |
| HaeIII | GGCC | 7 cut(s) | 5, 240, 386, 929, 1558, 1969, 2053 |
| HgaI | GACGC | 3 cut(s) | 547, 792, 1040 |
| HhaI | GCGC | 5 cut(s) | 68, 495, 1218, 1700, 2064 |
| Hin1I | GRCGYC | 2 cut(s) | 803, 859 |
| Hin6I | GCGC | 5 cut(s) | 66, 493, 1216, 1698, 2062 |
| HinP1I | GCGC | 5 cut(s) | 66, 493, 1216, 1698, 2062 |
| HincII | GTYRAC | 2 cut(s) | 250, 664 |
| HindII | GTYRAC | 2 cut(s) | 250, 664 |
| HindIII | AAGCTT | 1 cut(s) | 1087 |
| HpaI | GTTAAC | 1 cut(s) | 664 |
| HphI | GGTGA | 9 cut(s) | 346, 429, 722, 775, 890, 947, 1796, 1876, 2033 |
| Hpy166II | GTNNAC | 6 cut(s) | 73, 250, 295, 664, 1147, 1415 |
| Hpy188I | TCNGA | 6 cut(s) | 487, 1062, 1075, 1768, 1777, 2034 |
| Hpy188III | TCNNGA | 9 cut(s) | 118, 164, 259, 302, 650, 1012, 1229, 1247, 1714 |
| Hpy8I | GTNNAC | 6 cut(s) | 73, 250, 295, 664, 1147, 1415 |
| HpyCH4III | ACNGT | 6 cut(s) | 170, 299, 668, 718, 1318, 1747 |
| HpyCH4IV | ACGT | 6 cut(s) | 41, 306, 822, 859, 1417, 1709 |
| HpyCH4V | TGCA | 5 cut(s) | 826, 1114, 1158, 1331, 2045 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 90, 537, 2059 |
| HpyF3I | CTNAG | 3 cut(s) | 162, 975, 1628 |
| HpySE526I | ACGT | 6 cut(s) | 41, 306, 822, 859, 1417, 1709 |
| Hsp92I | GRCGYC | 2 cut(s) | 803, 859 |
| HspAI | GCGC | 5 cut(s) | 66, 493, 1216, 1698, 2062 |
| Kpn2I | TCCGGA | 2 cut(s) | 258, 1011 |
| KroI | GCCGGC | 1 cut(s) | 452 |
| KroNI | GCCGGC | 1 cut(s) | 454 |
| Ksp22I | TGATCA | 2 cut(s) | 999, 2029 |
| KspAI | GTTAAC | 1 cut(s) | 664 |
| Lsp1109I | GCAGC | 4 cut(s) | 927, 1253, 1590, 1593 |
| LweI | GCATC | 1 cut(s) | 1036 |
| MaeI | CTAG | 3 cut(s) | 59, 428, 2055 |
| MaeII | ACGT | 6 cut(s) | 41, 306, 822, 859, 1417, 1709 |
| MaeIII | GTNAC | 2 cut(s) | 935, 1864 |
| MbiI | CCGCTC | 3 cut(s) | 24, 361, 1023 |
| MhlI | GDGCHC | 9 cut(s) | 30, 41, 131, 258, 282, 591, 1236, 1745, 1766 |
| MluCI | AATT | 1 cut(s) | 520 |
| MlyI | GAGTC | 7 cut(s) | 92, 279, 476, 524, 721, 749, 779 |
| MmeI | TCCRAC | 3 cut(s) | 303, 324, 510 |
| MreI | CGCCGGCG | 1 cut(s) | 452 |
| MroI | TCCGGA | 2 cut(s) | 258, 1011 |
| MroNI | GCCGGC | 1 cut(s) | 452 |
| MseI | TTAA | 4 cut(s) | 663, 969, 984, 1134 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1403, 1611, 1748 |
| MspA1I | CMGCKG | 1 cut(s) | 918 |
| MspR9I | CCNGG | 7 cut(s) | 7, 8, 591, 634, 1067, 1129, 1870 |
| MvaI | CCWGG | 2 cut(s) | 1067, 1129 |
| MvnI | CGCG | 7 cut(s) | 303, 495, 651, 1176, 1307, 1570, 1700 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 90, 537, 2059 |
| NaeI | GCCGGC | 1 cut(s) | 454 |
| NciI | CCSGG | 5 cut(s) | 7, 8, 591, 634, 1870 |
| NcoI | CCATGG | 2 cut(s) | 32, 108 |
| NgoMIV | GCCGGC | 1 cut(s) | 452 |
| NlaIV | GGNNCC | 8 cut(s) | 29, 85, 263, 588, 631, 1039, 1064, 1541 |
| NmeAIII | GCCGAG | 4 cut(s) | 714, 955, 1014, 1584 |
| NmuCI | GTSAC | 2 cut(s) | 935, 1864 |
| NruI | TCGCGA | 2 cut(s) | 303, 651 |
| NsbI | TGCGCA | 1 cut(s) | 1217 |
| NspI | RCATGY | 1 cut(s) | 1610 |
| NspV | TTCGAA | 1 cut(s) | 622 |
| OliI | CACNNNNGTG | 1 cut(s) | 1748 |
| PaeI | GCATGC | 1 cut(s) | 1610 |
| PceI | AGGCCT | 1 cut(s) | 2053 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 312, 317, 486, 722, 1607 |
| PdiI | GCCGGC | 1 cut(s) | 454 |
| PfeI | GAWTC | 4 cut(s) | 201, 758, 1070, 1343 |
| PflFI | GACNNNGTC | 1 cut(s) | 101 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 93 |
| PkrI | GCNGC | 7 cut(s) | 413, 917, 920, 1243, 1580, 1583, 1702 |
| Ple19I | CGATCG | 2 cut(s) | 315, 1311 |
| PleI | GAGTC | 7 cut(s) | 92, 278, 476, 523, 721, 748, 778 |
| PpsI | GAGTC | 7 cut(s) | 92, 278, 476, 523, 721, 748, 778 |
| PpuMI | RGGWCCY | 1 cut(s) | 1539 |
| Psp124BI | GAGCTC | 4 cut(s) | 131, 258, 282, 1766 |
| Psp5II | RGGWCCY | 1 cut(s) | 1539 |
| Psp6I | CCWGG | 2 cut(s) | 1065, 1127 |
| PspEI | GGTNACC | 1 cut(s) | 1864 |
| PspFI | CCCAGC | 2 cut(s) | 93, 1385 |
| PspGI | CCWGG | 2 cut(s) | 1065, 1127 |
| PspN4I | GGNNCC | 8 cut(s) | 29, 85, 263, 588, 631, 1039, 1064, 1541 |
| PspPPI | RGGWCCY | 1 cut(s) | 1539 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1985 |
| PsyI | GACNNNGTC | 1 cut(s) | 101 |
| PvuI | CGATCG | 2 cut(s) | 315, 1311 |
| RruI | TCGCGA | 2 cut(s) | 303, 651 |
| RsaI | GTAC | 1 cut(s) | 1353 |
| RsaNI | GTAC | 1 cut(s) | 1352 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1403, 1611, 1748 |
| Rsr2I | CGGWCCG | 2 cut(s) | 593, 636 |
| RsrII | CGGWCCG | 2 cut(s) | 593, 636 |
| SacI | GAGCTC | 4 cut(s) | 131, 258, 282, 1766 |
| SaqAI | TTAA | 4 cut(s) | 663, 969, 984, 1134 |
| SatI | GCNGC | 7 cut(s) | 412, 916, 919, 1242, 1579, 1582, 1701 |
| SchI | GAGTC | 7 cut(s) | 92, 279, 476, 524, 721, 749, 779 |
| ScrFI | CCNGG | 7 cut(s) | 7, 8, 591, 634, 1067, 1129, 1870 |
| SduI | GDGCHC | 9 cut(s) | 30, 41, 131, 258, 282, 591, 1236, 1745, 1766 |
| SfaNI | GCATC | 1 cut(s) | 1036 |
| SfcI | CTRYAG | 1 cut(s) | 169 |
| SfuI | TTCGAA | 1 cut(s) | 622 |
| SgrAI | CRCCGGYG | 1 cut(s) | 452 |
| SinI | GGWCC | 7 cut(s) | 115, 292, 593, 636, 1108, 1282, 1539 |
| SmaI | CCCGGG | 1 cut(s) | 8 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1403, 1611, 1748 |
| SmlI | CTYRAG | 1 cut(s) | 1245 |
| SmoI | CTYRAG | 1 cut(s) | 1245 |
| SpeI | ACTAGT | 1 cut(s) | 58 |
| SphI | GCATGC | 1 cut(s) | 1610 |
| Sse9I | AATT | 1 cut(s) | 520 |
| SseBI | AGGCCT | 1 cut(s) | 2053 |
| SspMI | CTAG | 3 cut(s) | 59, 428, 2055 |
| SstI | GAGCTC | 4 cut(s) | 131, 258, 282, 1766 |
| StuI | AGGCCT | 1 cut(s) | 2053 |
| StyD4I | CCNGG | 7 cut(s) | 5, 6, 589, 632, 1065, 1127, 1868 |
| StyI | CCWWGG | 2 cut(s) | 32, 108 |
| TaaI | ACNGT | 6 cut(s) | 170, 299, 668, 718, 1318, 1747 |
| TaiI | ACGT | 6 cut(s) | 44, 309, 825, 862, 1420, 1712 |
| TaqII | GACCGA | 1 cut(s) | 653 |
| TasI | AATT | 1 cut(s) | 520 |
| TauI | GCSGC | 3 cut(s) | 414, 921, 1703 |
| TfiI | GAWTC | 4 cut(s) | 201, 758, 1070, 1343 |
| Tru1I | TTAA | 4 cut(s) | 663, 969, 984, 1134 |
| Tru9I | TTAA | 4 cut(s) | 663, 969, 984, 1134 |
| TscAI | CASTG | 2 cut(s) | 163, 1933 |
| TseFI | GTSAC | 2 cut(s) | 935, 1864 |
| TseI | GCWGC | 4 cut(s) | 915, 1241, 1578, 1581 |
| Tsp45I | GTSAC | 2 cut(s) | 935, 1864 |
| TspDTI | ATGAA | 2 cut(s) | 1670, 1739 |
| TspGWI | ACGGA | 6 cut(s) | 30, 91, 615, 1030, 1295, 1616 |
| TspMI | CCCGGG | 1 cut(s) | 6 |
| TspRI | CASTG | 2 cut(s) | 163, 1933 |
| Tth111I | GACNNNGTC | 1 cut(s) | 101 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 93 |
| VpaK11BI | GGWCC | 7 cut(s) | 115, 292, 593, 636, 1108, 1282, 1539 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1115 |
| XceI | RCATGY | 1 cut(s) | 1610 |
| XmaI | CCCGGG | 1 cut(s) | 6 |
| XmiI | GTMKAC | 1 cut(s) | 1146 |
| XspI | CTAG | 3 cut(s) | 59, 428, 2055 |
| ZraI | GACGTC | 1 cut(s) | 860 |