Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0006248

Physical Location & Seq

Genomic Coordinates Forward (+)

1037883 .. 1038242

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g01320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAAGCAGAACTCGCCGAGCACTGAAGTGAAGAAGGAGACATCGGATGGTTCTGAGGATGATAGCGAGGAGAGCGAGGACGAGAAGAAGAAGAAGAAGCCGACGACGAGGGGTAGGAAGAAGCCAGAGGTTGAGAGGAATGAGAGGGTGACGCGGAGTTCAACGGGAAGCGGGGGAGGGAGGGGAGGGGGAAGAAGGTGTCAGGAGAGCAATGGGAGTGGAAGGAGAGGGGTCGGGAGGCCACCGAAGAGGCCGGAGACTGCGGCGGCAGAAGCGGGGAGTAGGAAGAGAGGGAGAGAGAATGGGGAGGCTGATCAGGTGGGGAGTGCAGGGAGGCGGAGAAAGCGTACAAGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain Myb_DNA-binding

Protein Analysis

120

Amino Acids

13.02

Weight (kDa)

10.73

Isoelectric Point (pI)

75.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44430 AT3G60110
fragaria_vesca	FvH4_3g44130 FvH4_3g44130 FvH4_3g44130
malus_domestica	MD03G1017000.v1.1 MD11G1017600.v1.1 MD11G1018000.v1.1 MD11G1018200.v1.1
prunus_persica	Prupe.6G015400_v2.0.a1
pyrus_communis	pycom03g01460 pycom03g01470 pycom11g01250 pycom11g01320
rosa_chinensis	RchiOBHm_Chr5g0080461
rosa_laevigata	RLG00000036858
rosa_multiflora	Rmu_co8095392.1_g000001 Rmu_sc0020711.1_g000001 Rmu_sc0025164.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002940
rosa_rugosa	Rorug05G0469000 Rorug05G0469100
rosa_samantha	Rh5AG522700 Rh5BG544300 Rh5CG567900 Rh5DG554600
rosa_wichuraiana	Rw0G023230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	154
AciI	CCGC	6 cut(s)	154, 171, 263, 266, 275, 337
AcuI	CTGAAG	1 cut(s)	45
AfaI	GTAC	1 cut(s)	349
AgsI	TTSAA	1 cut(s)	162
AleI	CACNNNNGTG	1 cut(s)	26
Alw21I	GWGCWC	1 cut(s)	23
Alw26I	GTCTC	2 cut(s)	32, 251
AoxI	GGCC	2 cut(s)	239, 251
AsuHPI	GGTGA	1 cut(s)	160
Bbv12I	GWGCWC	1 cut(s)	23
BccI	CCATC	1 cut(s)	41
BclI	TGATCA	1 cut(s)	313
BcoDI	GTCTC	2 cut(s)	32, 251
BisI	GCNGC	2 cut(s)	264, 267
BlsI	GCNGC	2 cut(s)	265, 268
BsaXI	ACNNNNNCTCC	1 cut(s)	331
Bse3DI	GCAATG	1 cut(s)	217
BseGI	GGATG	2 cut(s)	52, 64
BseMI	GCAATG	1 cut(s)	217
BseMII	CTCAG	1 cut(s)	45
BseRI	GAGGAG	1 cut(s)	83
BsgI	GTGCAG	1 cut(s)	348
Bsh1236I	CGCG	1 cut(s)	154
BshFI	GGCC	2 cut(s)	241, 253
BsiHKAI	GWGCWC	1 cut(s)	23
BsiSI	CCGG	1 cut(s)	254
BsmAI	GTCTC	2 cut(s)	32, 251
BsnI	GGCC	2 cut(s)	241, 253
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp143I	GATC	1 cut(s)	313
BspACI	CCGC	6 cut(s)	154, 171, 263, 266, 275, 337
BspANI	GGCC	2 cut(s)	241, 253
BspCNI	CTCAG	1 cut(s)	46
BspFNI	CGCG	1 cut(s)	154
BsrDI	GCAATG	1 cut(s)	217
BssMI	GATC	1 cut(s)	313
Bst6I	CTCTTC	2 cut(s)	242, 281
BstDEI	CTNAG	1 cut(s)	54
BstF5I	GGATG	2 cut(s)	52, 64
BstFNI	CGCG	1 cut(s)	154
BstKTI	GATC	1 cut(s)	316
BstMAI	GTCTC	2 cut(s)	32, 251
BstMBI	GATC	1 cut(s)	313
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 72, 272, 343
BstUI	CGCG	1 cut(s)	154
BsuRI	GGCC	2 cut(s)	241, 253
BtsCI	GGATG	2 cut(s)	52, 64
BtsIMutI	CAGTG	1 cut(s)	21
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	348
CspCI	CAANNNNNGTGG	2 cut(s)	199, 234
CviJI	RGCY	5 cut(s)	100, 124, 241, 253, 311
CviKI_1	RGCY	5 cut(s)	100, 124, 241, 253, 311
CviQI	GTAC	1 cut(s)	348
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
Eam1104I	CTCTTC	2 cut(s)	242, 281
EarI	CTCTTC	2 cut(s)	242, 281
EciI	GGCGGA	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	45
FauI	CCCGC	2 cut(s)	164, 268
FbaI	TGATCA	1 cut(s)	313
Fnu4HI	GCNGC	2 cut(s)	264, 267
FokI	GGATG	2 cut(s)	59, 71
Fsp4HI	GCNGC	2 cut(s)	264, 267
GluI	GCNGC	2 cut(s)	264, 267
HaeIII	GGCC	2 cut(s)	241, 253
HapII	CCGG	1 cut(s)	254
HgaI	GACGC	1 cut(s)	160
HpaII	CCGG	1 cut(s)	254
HphI	GGTGA	1 cut(s)	160
Hpy188I	TCNGA	2 cut(s)	46, 55
Hpy188III	TCNNGA	2 cut(s)	203, 235
Hpy99I	CGWCG	2 cut(s)	106, 109
HpyAV	CCTTC	3 cut(s)	28, 189, 216
HpyCH4V	TGCA	1 cut(s)	329
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 72, 272, 343
HpyF3I	CTNAG	1 cut(s)	54
Ksp22I	TGATCA	1 cut(s)	313
Kzo9I	GATC	1 cut(s)	313
LpnPI	CCDG	5 cut(s)	138, 188, 267, 302, 315
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	1 cut(s)	315
MboI	GATC	1 cut(s)	313
MboII	GAAGA	9 cut(s)	43, 97, 100, 103, 106, 130, 204, 259, 298
MhlI	GDGCHC	1 cut(s)	23
MslI	CAYNNNNRTG	1 cut(s)	26
MspI	CCGG	1 cut(s)	254
MvnI	CGCG	1 cut(s)	154
MwoI	GCNNNNNNNGC	4 cut(s)	13, 72, 272, 343
NdeII	GATC	1 cut(s)	313
NmeAIII	GCCGAG	1 cut(s)	42
NmuCI	GTSAC	1 cut(s)	148
OliI	CACNNNNGTG	1 cut(s)	26
PkrI	GCNGC	2 cut(s)	265, 268
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
RseI	CAYNNNNRTG	1 cut(s)	26
SatI	GCNGC	2 cut(s)	264, 267
Sau3AI	GATC	1 cut(s)	313
SduI	GDGCHC	1 cut(s)	23
SetI	ASST	4 cut(s)	132, 200, 321, 359
SmiMI	CAYNNNNRTG	1 cut(s)	26
SsiI	CCGC	6 cut(s)	154, 171, 263, 266, 275, 337
TauI	GCSGC	2 cut(s)	266, 269
TscAI	CASTG	1 cut(s)	28
TseFI	GTSAC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.