Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006248

Physical Location & Seq

Genomic Coordinates Reverse (-)

89750265 .. 89753854

Gene Structure 3590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG522700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2115 bp

ATGGCTAGTAGGGAACACGAAACGAGCGCGCAACCGTGGGGCACGTTAGAGGAGCTCTTGCTGGTGTCCGCCGTGAACCGTCACGGCACGGAGCGCTGGGACTCCGTCGCCAAGGAGGTTAAGTCCCGGAGCTCCATGACGACAACGGCGGTGTTCACTGCTCAGAACTGTAGGGACAAGTTCGACGACCTCAAACGCCGCTTCGTCGTCTCGCAGCAAAACGACGCCGAATCGCGAAGCGGCGACGACGACGGGCTGGCGTTTATGGTTGACGAGCTCCGCAGGCTCCGAGTCGAGGAGCTCCGCCGCGAGGTCCGCCGTCGCGACGTTTCGATCGTGTCGTTGGAGTTGAAGGTGAAGAAGATGGAGGAGGACAGAGACCGGAGCTTGAAGGCGGAGCAGCCGGCTCCGGTAAAGGATCTCCATGGCGACGGTGGAGGAGGAGGAGAGCAATCGGAGTTGCCGGAGAAACTGGCCGGAAAACCAAACTCCGGCAGAGACTTCGTGTCCGATTCCTCCGAGCGCGAGAACCGATCCTTCAACGAGTCCAATTCCACAAGCCAGAGAAGCGAGGCGAAAGCAAACGGCGTCGTGGAGAAAAAAAGGGATGCGGACGCGGAGCCCGGCCCGGAGAGGAACCAACCAGATCCGGTCCAGACCGAAACCCGATCCGAACCGGCCTCCGCCAACGGTAAAGTGATCGACGACGACGACGACGACGTGGACGATAGAAACGATCGCCAAGGCGGAGGAGGAGCAGAGCCGACAACGACGGGTCGACCCGGCGAGTCGAACGAGTTGTCGGGGTCGAAACGGGCGGTGGTAAAGGAAGTGAGGAAGCAGAACAGCGATGTTCAAAGCTCGGCTAGCTTGACGAGGAGGAGGAAACGACGTCGTAAAGGTGGCGATAGTAGCAGCGGCGAAGAGCCCGAGGGTGGTGAGGAAGTTTCTCCCGCCACCACGAAACGGGTTAAGCTCGTTAAACTTGAGCCGTTGGTCAAGGTCCTCAGGATCGTCCGCTCGCATCGGCTCGGCTCCGTATTCCAGCGCCGGCTTCGGAGCCAGGAATCACAAAGGTACAAGAACCTGATTAGGGAACACGTGGACCTCAAGGTGGTCCAATCCAGGCTCGAGAAAGGGGCCTACAACGACTGCACCCACAAGTTCTTCCGCGACCTCCTCCTCGTATTCAGCAACGCCGTAGTTTTCTTCCGCAAGACCGCGCCGGAACACGTGGCGGCTCTAGAGCTACGCTCGCTGGTGTTGAAGGAAATGAACGACCAGCTACCGAGACCTAGACCCGCCGTGAGCACAGTGAAGCCCAAGCCCAATGTAGAGTCCGATATCACTACTACTACTACTTCCATGAGACCCAGCAAGTCGTCTTCGATCGTTGTGTGCGGCAAACGTGGTTCCATCAATGCATTATCCGAAAACAAGAAAGGAACTGTTAGAAAGGTGGAGGTTGAAGAGAAAGAAGCGAAGGTGAAGGTGAACGGGAAGAAGGAAGACATTGCTCCGGTTAAGGTTGAGGACAAGGGTGTGAGGAAGAGAAGGTCGACTCAGGAAAGAAGGGGAGAGAGAAGGTCGAGGACGACGATGAGTAACAGCAAGAATGTAGAAGCGAAGACGAAGCATGAGTCCGGCGGAAATGTGCTAAGTTCGCGTGATGGTTTGGAGGCGGTGAAGACGGAGAAGAAAGAAGAGGTTAAGAAGAAGCAAGGCGCGGCGAACTTCTTGAAGAGAATGAAGCAGAATGGTAGGAGCGGAGTTGGGCGGGGTAAGAACTCTTCGGATGTTTCGGAGGATGAGAGTAAGGATAGCATGGTGGATGAAGAAGAGGAGGAGGAGGAGGTGGAGGAAGAGGAGGAAGGAAAGAAGAAGAACAGGACGGGGAGGAAGAAAACGGAGGTGGAGAGGAAAGTGAGGGTGACTCGTAGCTCTAGTGGAAATCGGGGAAGGCGAGGGGGAAGAGGTCAGGAGAGCGGTGGGAGGGGGAAGAGGGGGGTCGGGAGGCCGCCGGCGGCGGCTGGAAGCGGAAAACGGGAAAGAGACAATGGCGAGGCGGATCAGGTGGGGAGTGCAGGGAGGCCGAGGAAACGAACAAGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain Myb_DNA-binding

Protein Analysis

704

Amino Acids

78.45

Weight (kDa)

9.78

Isoelectric Point (pI)

65.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	11 - 44	6.8e-06	Myb-like DNA-binding domain
Bromodomain	PF00439	335 - 415	1.3e-08	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44430 AT3G60110
fragaria_vesca	FvH4_3g44130 FvH4_3g44130 FvH4_3g44130
malus_domestica	MD03G1017000.v1.1 MD11G1017600.v1.1 MD11G1018000.v1.1 MD11G1018200.v1.1
prunus_persica	Prupe.6G015400_v2.0.a1
pyrus_communis	pycom03g01460 pycom03g01470 pycom11g01250 pycom11g01320
rosa_chinensis	RchiOBHm_Chr5g0080461
rosa_laevigata	RLG00000036858
rosa_multiflora	Rmu_co8095392.1_g000001 Rmu_sc0020711.1_g000001 Rmu_sc0025164.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002940
rosa_rugosa	Rorug05G0469000 Rorug05G0469100
rosa_samantha	Rh5AG522700 Rh5BG544300 Rh5CG567900 Rh5DG554600
rosa_wichuraiana	Rw0G023230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	895
AccBSI	CCGCTC	3 cut(s)	1020, 1767, 1986
AccI	GTMKAC	2 cut(s)	778, 1559
AclWI	GGATC	6 cut(s)	426, 528, 641, 663, 1019, 2076
AcoI	YGGCCR	1 cut(s)	474
AcvI	CACGTG	2 cut(s)	1102, 1234
AcyI	GRCGYC	3 cut(s)	225, 588, 892
AfaI	GTAC	1 cut(s)	1079
AfeI	AGCGCT	1 cut(s)	95
AfiI	CCNNNNNNNGG	7 cut(s)	295, 310, 491, 935, 966, 1093, 1114
AflIII	ACRYGT	2 cut(s)	1099, 1231
AgsI	TTSAA	7 cut(s)	352, 391, 541, 857, 1267, 1469, 1741
AhdI	GACNNNNNGTC	1 cut(s)	505
AjiI	CACGTC	1 cut(s)	721
AjnI	CCWGG	2 cut(s)	1062, 1124
Alw21I	GWGCWC	5 cut(s)	57, 134, 279, 303, 1313
Alw26I	GTCTC	6 cut(s)	214, 372, 492, 1285, 1363, 2046
AlwI	GGATC	6 cut(s)	426, 528, 641, 663, 1019, 2076
Ama87I	CYCGRG	2 cut(s)	929, 1130
Aor51HI	AGCGCT	1 cut(s)	95
AoxI	GGCC	6 cut(s)	474, 625, 678, 1140, 2015, 2090
ApeKI	GCWGC	3 cut(s)	214, 400, 915
ArsI	GACNNNNNNTTYG	4 cut(s)	785, 817, 1625, 1657
AspLEI	GCGC	7 cut(s)	29, 31, 96, 525, 1050, 1225, 1727
AspS9I	GGNCC	7 cut(s)	313, 626, 652, 1003, 1105, 1117, 1140
AsuC2I	CCSGG	4 cut(s)	127, 624, 629, 783
AsuHPI	GGTGA	6 cut(s)	367, 950, 1498, 1504, 1696, 1942
AsuNHI	GCTAGC	1 cut(s)	866
AvaI	CYCGRG	2 cut(s)	929, 1130
AvaII	GGWCC	5 cut(s)	313, 652, 1003, 1105, 1117
AxyI	CCTNAGG	1 cut(s)	1007
BaeGI	GKGCMC	1 cut(s)	44
BanII	GRGCYC	6 cut(s)	57, 134, 279, 303, 624, 930
BarI	GAAGNNNNNNTAC	2 cut(s)	1774, 1806
BbrPI	CACGTG	2 cut(s)	1102, 1234
BbsI	GAAGAC	4 cut(s)	1377, 1515, 1634, 1694
Bbv12I	GWGCWC	5 cut(s)	57, 134, 279, 303, 1313
BbvI	GCAGC	3 cut(s)	226, 412, 927
BccI	CCATC	3 cut(s)	358, 1424, 1664
BceAI	ACGGC	8 cut(s)	56, 100, 162, 303, 601, 976, 1184, 1289
BcgI	CGANNNNNNTGC	2 cut(s)	484, 518
BciT130I	CCWGG	2 cut(s)	1064, 1126
BcnI	CCSGG	4 cut(s)	127, 624, 629, 783
BcoDI	GTCTC	6 cut(s)	214, 372, 492, 1285, 1363, 2046
BfaI	CTAG	5 cut(s)	6, 867, 1244, 1296, 1944
BfmI	CTRYAG	1 cut(s)	169
BfoI	RGCGCY	2 cut(s)	97, 1051
Bme1390I	CCNGG	6 cut(s)	127, 624, 629, 783, 1064, 1126
Bme18I	GGWCC	5 cut(s)	313, 652, 1003, 1105, 1117
BmeRI	GACNNNNNGTC	1 cut(s)	505
BmeT110I	CYCGRG	2 cut(s)	929, 1130
BmgBI	CACGTC	1 cut(s)	721
BmgT120I	GGNCC	7 cut(s)	313, 626, 652, 1003, 1105, 1117, 1140
BmiI	GGNNCC	8 cut(s)	287, 408, 621, 638, 1036, 1061, 1141, 1414
BmrFI	CCNGG	6 cut(s)	127, 624, 629, 783, 1064, 1126
BmsI	GCATC	2 cut(s)	598, 1033
BmtI	GCTAGC	1 cut(s)	870
BpiI	GAAGAC	4 cut(s)	1377, 1515, 1634, 1694
BplI	GAGNNNNNCTC	4 cut(s)	1238, 1270, 1918, 1950
BpuEI	CTTGAG	2 cut(s)	1007, 1094
BpuMI	CCSGG	4 cut(s)	127, 624, 629, 783
BsaAI	YACGTR	2 cut(s)	1102, 1234
BsaHI	GRCGYC	3 cut(s)	225, 588, 892
BsaI	GGTCTC	3 cut(s)	372, 1285, 1363
BsaJI	CCNNGG	6 cut(s)	35, 111, 424, 742, 930, 2093
BsaWI	WCCGGW	4 cut(s)	381, 409, 649, 1519
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	7 cut(s)	295, 310, 491, 935, 966, 1093, 1114
Bse118I	RCCGGY	4 cut(s)	403, 676, 1050, 2020
Bse1I	ACTGG	1 cut(s)	477
Bse21I	CCTNAGG	1 cut(s)	1007
Bse3DI	GCAATG	1 cut(s)	1512
BseBI	CCWGG	2 cut(s)	1064, 1126
BseDI	CCNNGG	6 cut(s)	35, 111, 424, 742, 930, 2093
BseGI	GGATG	4 cut(s)	613, 1801, 1813, 1837
BseLI	CCNNNNNNNGG	7 cut(s)	295, 310, 491, 935, 966, 1093, 1114
BseMI	GCAATG	1 cut(s)	1512
BseMII	CTCAG	3 cut(s)	176, 1021, 1577
BseNI	ACTGG	1 cut(s)	477
BsePI	GCGCGC	1 cut(s)	27
BseSI	GKGCMC	1 cut(s)	44
BseXI	GCAGC	3 cut(s)	226, 412, 927
BseYI	CCCAGC	2 cut(s)	96, 1373
BsgI	GTGCAG	2 cut(s)	1138, 2103
Bsh1285I	CGRYCG	3 cut(s)	336, 739, 1392
BshFI	GGCC	6 cut(s)	476, 627, 680, 1142, 2017, 2092
BsiEI	CGRYCG	3 cut(s)	336, 739, 1392
BsiHKAI	GWGCWC	5 cut(s)	57, 134, 279, 303, 1313
BsiHKCI	CYCGRG	2 cut(s)	929, 1130
BslFI	GGGAC	3 cut(s)	109, 113, 188
BslI	CCNNNNNNNGG	7 cut(s)	295, 310, 491, 935, 966, 1093, 1114
BsmAI	GTCTC	6 cut(s)	214, 372, 492, 1285, 1363, 2046
BsmBI	CGTCTC	1 cut(s)	214
BsmFI	GGGAC	3 cut(s)	109, 113, 188
BsnI	GGCC	6 cut(s)	476, 627, 680, 1142, 2017, 2092
Bso31I	GGTCTC	3 cut(s)	372, 1285, 1363
BsoBI	CYCGRG	2 cut(s)	929, 1130
Bsp1286I	GDGCHC	8 cut(s)	44, 57, 134, 279, 303, 624, 930, 1313
Bsp19I	CCATGG	1 cut(s)	424
Bsp68I	TCGCGA	2 cut(s)	235, 324
BspANI	GGCC	6 cut(s)	476, 627, 680, 1142, 2017, 2092
BspCNI	CTCAG	3 cut(s)	175, 1020, 1576
BspLI	GGNNCC	8 cut(s)	287, 408, 621, 638, 1036, 1061, 1141, 1414
BspOI	GCTAGC	1 cut(s)	870
BspPI	GGATC	6 cut(s)	426, 528, 641, 663, 1019, 2076
BspQI	GCTCTTC	1 cut(s)	918
BspTNI	GGTCTC	3 cut(s)	372, 1285, 1363
BsrBI	CCGCTC	3 cut(s)	1020, 1767, 1986
BsrDI	GCAATG	1 cut(s)	1512
BsrFI	RCCGGY	4 cut(s)	403, 676, 1050, 2020
BsrI	ACTGG	1 cut(s)	477
BssAI	RCCGGY	4 cut(s)	403, 676, 1050, 2020
BssECI	CCNNGG	6 cut(s)	35, 111, 424, 742, 930, 2093
BssHII	GCGCGC	1 cut(s)	27
BssNI	GRCGYC	3 cut(s)	225, 588, 892
BssT1I	CCWWGG	3 cut(s)	111, 424, 742
Bst2UI	CCWGG	2 cut(s)	1064, 1126
Bst4CI	ACNGT	7 cut(s)	36, 80, 170, 434, 692, 1315, 1450
BstACI	GRCGYC	3 cut(s)	225, 588, 892
BstBAI	YACGTR	2 cut(s)	1102, 1234
BstC8I	GCNNGC	9 cut(s)	29, 258, 284, 405, 868, 1022, 1052, 1256, 2022
BstDEI	CTNAG	4 cut(s)	162, 1007, 1563, 1658
BstDSI	CCRYGG	2 cut(s)	35, 424
BstF5I	GGATG	4 cut(s)	613, 1801, 1813, 1837
BstH2I	RGCGCY	2 cut(s)	97, 1051
BstHHI	GCGC	7 cut(s)	29, 31, 96, 525, 1050, 1225, 1727
BstMAI	GTCTC	6 cut(s)	214, 372, 492, 1285, 1363, 2046
BstMCI	CGRYCG	3 cut(s)	336, 739, 1392
BstMWI	GCNNNNNNNGC	8 cut(s)	93, 283, 315, 567, 867, 912, 1255, 1663
BstNI	CCWGG	2 cut(s)	1064, 1126
BstSCI	CCNGG	6 cut(s)	125, 622, 627, 781, 1062, 1124
BstSFI	CTRYAG	1 cut(s)	169
BstSLI	GKGCMC	1 cut(s)	44
BstV1I	GCAGC	3 cut(s)	226, 412, 927
BstV2I	GAAGAC	4 cut(s)	1377, 1515, 1634, 1694
BstX2I	RGATCY	2 cut(s)	418, 646
BstYI	RGATCY	2 cut(s)	418, 646
Bsu36I	CCTNAGG	1 cut(s)	1007
BsuRI	GGCC	6 cut(s)	476, 627, 680, 1142, 2017, 2092
BtgI	CCRYGG	2 cut(s)	35, 424
BtgZI	GCGATG	1 cut(s)	864
BtrI	CACGTC	1 cut(s)	721
BtsCI	GGATG	4 cut(s)	613, 1801, 1813, 1837
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	2 cut(s)	156, 1320
BtuMI	TCGCGA	2 cut(s)	235, 324
Cac8I	GCNNGC	9 cut(s)	29, 258, 284, 405, 868, 1022, 1052, 1256, 2022
CfoI	GCGC	7 cut(s)	29, 31, 96, 525, 1050, 1225, 1727
Cfr10I	RCCGGY	4 cut(s)	403, 676, 1050, 2020
Cfr13I	GGNCC	7 cut(s)	313, 626, 652, 1003, 1105, 1117, 1140
CseI	GACGC	3 cut(s)	233, 577, 623
Csp6I	GTAC	1 cut(s)	1078
CviAII	CATG	5 cut(s)	136, 425, 1366, 1637, 1825
CviQI	GTAC	1 cut(s)	1078
DdeI	CTNAG	4 cut(s)	162, 1007, 1563, 1658
DriI	GACNNNNNGTC	1 cut(s)	505
EaeI	YGGCCR	1 cut(s)	474
Eam1105I	GACNNNNNGTC	1 cut(s)	505
EciI	GGCGGA	8 cut(s)	58, 293, 305, 410, 673, 762, 1662, 2081
Ecl136II	GAGCTC	4 cut(s)	55, 132, 277, 301
Eco130I	CCWWGG	3 cut(s)	111, 424, 742
Eco24I	GRGCYC	6 cut(s)	57, 134, 279, 303, 624, 930
Eco31I	GGTCTC	3 cut(s)	372, 1285, 1363
Eco32I	GATATC	1 cut(s)	1345
Eco47I	GGWCC	5 cut(s)	313, 652, 1003, 1105, 1117
Eco47III	AGCGCT	1 cut(s)	95
Eco53kI	GAGCTC	4 cut(s)	55, 132, 277, 301
Eco72I	CACGTG	2 cut(s)	1102, 1234
Eco81I	CCTNAGG	1 cut(s)	1007
Eco88I	CYCGRG	2 cut(s)	929, 1130
EcoICRI	GAGCTC	4 cut(s)	55, 132, 277, 301
EcoO109I	RGGNCCY	2 cut(s)	1003, 1140
EcoRII	CCWGG	2 cut(s)	1062, 1124
EcoRV	GATATC	1 cut(s)	1345
EcoT14I	CCWWGG	3 cut(s)	111, 424, 742
EcoT22I	ATGCAT	1 cut(s)	1426
EcoT38I	GRGCYC	6 cut(s)	57, 134, 279, 303, 624, 930
ErhI	CCWWGG	3 cut(s)	111, 424, 742
Esp3I	CGTCTC	1 cut(s)	214
FaeI	CATG	5 cut(s)	139, 428, 1369, 1640, 1828
FaiI	YATR	6 cut(s)	137, 266, 426, 1367, 1638, 1826
FaqI	GGGAC	3 cut(s)	109, 113, 188
FatI	CATG	5 cut(s)	135, 424, 1365, 1636, 1824
FauI	CCCGC	3 cut(s)	961, 1309, 1770
FblI	GTMKAC	2 cut(s)	778, 1559
FokI	GGATG	4 cut(s)	620, 1808, 1820, 1844
FriOI	GRGCYC	6 cut(s)	57, 134, 279, 303, 624, 930
FspBI	CTAG	5 cut(s)	6, 867, 1244, 1296, 1944
GlaI	GCGC	7 cut(s)	28, 30, 95, 524, 1049, 1224, 1726
GsaI	CCCAGC	2 cut(s)	100, 1377
HaeII	RGCGCY	2 cut(s)	97, 1051
HaeIII	GGCC	6 cut(s)	476, 627, 680, 1142, 2017, 2092
HgaI	GACGC	3 cut(s)	233, 577, 623
HhaI	GCGC	7 cut(s)	29, 31, 96, 525, 1050, 1225, 1727
Hin1I	GRCGYC	3 cut(s)	225, 588, 892
Hin1II	CATG	5 cut(s)	139, 428, 1369, 1640, 1828
Hin6I	GCGC	7 cut(s)	27, 29, 94, 523, 1048, 1223, 1725
HinP1I	GCGC	7 cut(s)	27, 29, 94, 523, 1048, 1223, 1725
HincII	GTYRAC	3 cut(s)	271, 779, 1560
HindII	GTYRAC	3 cut(s)	271, 779, 1560
HphI	GGTGA	6 cut(s)	367, 950, 1498, 1504, 1696, 1942
Hpy166II	GTNNAC	8 cut(s)	76, 156, 271, 724, 779, 1105, 1495, 1560
Hpy8I	GTNNAC	8 cut(s)	76, 156, 271, 724, 779, 1105, 1495, 1560
HpyCH4III	ACNGT	7 cut(s)	36, 80, 170, 434, 692, 1315, 1450
HpyCH4IV	ACGT	7 cut(s)	44, 327, 720, 892, 1101, 1233, 1408
HpyCH4V	TGCA	3 cut(s)	1155, 1424, 2084
HpyF10VI	GCNNNNNNNGC	8 cut(s)	93, 283, 315, 567, 867, 912, 1255, 1663
HpyF3I	CTNAG	4 cut(s)	162, 1007, 1563, 1658
HpySE526I	ACGT	7 cut(s)	44, 327, 720, 892, 1101, 1233, 1408
Hsp92I	GRCGYC	3 cut(s)	225, 588, 892
Hsp92II	CATG	5 cut(s)	139, 428, 1369, 1640, 1828
HspAI	GCGC	7 cut(s)	27, 29, 94, 523, 1048, 1223, 1725
KroI	GCCGGC	3 cut(s)	403, 1050, 2020
KroNI	GCCGGC	3 cut(s)	405, 1052, 2022
LguI	GCTCTTC	1 cut(s)	918
Lsp1109I	GCAGC	3 cut(s)	226, 412, 927
LweI	GCATC	2 cut(s)	598, 1033
MaeI	CTAG	5 cut(s)	6, 867, 1244, 1296, 1944
MaeII	ACGT	7 cut(s)	44, 327, 720, 892, 1101, 1233, 1408
MaeIII	GTNAC	3 cut(s)	80, 1604, 1930
MbiI	CCGCTC	3 cut(s)	1020, 1767, 1986
MflI	RGATCY	2 cut(s)	418, 646
MhlI	GDGCHC	8 cut(s)	44, 57, 134, 279, 303, 624, 930, 1313
MluCI	AATT	1 cut(s)	550
MlyI	GAGTC	8 cut(s)	95, 300, 554, 797, 1346, 1555, 1649, 1927
MmeI	TCCRAC	1 cut(s)	324
Mph1103I	ATGCAT	1 cut(s)	1426
MreI	CGCCGGCG	1 cut(s)	2020
MroNI	GCCGGC	3 cut(s)	403, 1050, 2020
MseI	TTAA	5 cut(s)	120, 972, 981, 1524, 1710
MspA1I	CMGCKG	1 cut(s)	918
MspR9I	CCNGG	6 cut(s)	127, 624, 629, 783, 1064, 1126
MvaI	CCWGG	2 cut(s)	1064, 1126
MwoI	GCNNNNNNNGC	8 cut(s)	93, 283, 315, 567, 867, 912, 1255, 1663
NaeI	GCCGGC	3 cut(s)	405, 1052, 2022
NciI	CCSGG	4 cut(s)	127, 624, 629, 783
NcoI	CCATGG	1 cut(s)	424
NgoMIV	GCCGGC	3 cut(s)	403, 1050, 2020
NheI	GCTAGC	1 cut(s)	866
NlaIII	CATG	5 cut(s)	139, 428, 1369, 1640, 1828
NlaIV	GGNNCC	8 cut(s)	287, 408, 621, 638, 1036, 1061, 1141, 1414
NmeAIII	GCCGAG	2 cut(s)	842, 1011
NmuCI	GTSAC	2 cut(s)	80, 1930
NruI	TCGCGA	2 cut(s)	235, 324
NsiI	ATGCAT	1 cut(s)	1426
PaeR7I	CTCGAG	1 cut(s)	1130
PauI	GCGCGC	1 cut(s)	27
PciSI	GCTCTTC	1 cut(s)	918
PdiI	GCCGGC	3 cut(s)	405, 1052, 2022
PfeI	GAWTC	3 cut(s)	230, 512, 1067
PflFI	GACNNNGTC	1 cut(s)	104
PfoI	TCCNGGA	1 cut(s)	125
Ple19I	CGATCG	3 cut(s)	336, 739, 1392
PleI	GAGTC	8 cut(s)	95, 299, 553, 796, 1345, 1555, 1648, 1927
PmaCI	CACGTG	2 cut(s)	1102, 1234
PmlI	CACGTG	2 cut(s)	1102, 1234
PpsI	GAGTC	8 cut(s)	95, 299, 553, 796, 1345, 1555, 1648, 1927
Ppu21I	YACGTR	2 cut(s)	1102, 1234
PpuMI	RGGWCCY	1 cut(s)	1003
Psp124BI	GAGCTC	4 cut(s)	57, 134, 279, 303
Psp5II	RGGWCCY	1 cut(s)	1003
Psp6I	CCWGG	2 cut(s)	1062, 1124
PspCI	CACGTG	2 cut(s)	1102, 1234
PspFI	CCCAGC	2 cut(s)	96, 1373
PspGI	CCWGG	2 cut(s)	1062, 1124
PspN4I	GGNNCC	8 cut(s)	287, 408, 621, 638, 1036, 1061, 1141, 1414
PspPI	GGNCC	7 cut(s)	313, 626, 652, 1003, 1105, 1117, 1140
PspPPI	RGGWCCY	1 cut(s)	1003
PsuI	RGATCY	2 cut(s)	418, 646
PsyI	GACNNNGTC	1 cut(s)	104
PteI	GCGCGC	1 cut(s)	27
PvuI	CGATCG	3 cut(s)	336, 739, 1392
RruI	TCGCGA	2 cut(s)	235, 324
RsaI	GTAC	1 cut(s)	1079
RsaNI	GTAC	1 cut(s)	1078
SacI	GAGCTC	4 cut(s)	57, 134, 279, 303
SalI	GTCGAC	2 cut(s)	777, 1558
SapI	GCTCTTC	1 cut(s)	918
SaqAI	TTAA	5 cut(s)	120, 972, 981, 1524, 1710
Sau96I	GGNCC	7 cut(s)	313, 626, 652, 1003, 1105, 1117, 1140
SchI	GAGTC	8 cut(s)	95, 300, 554, 797, 1346, 1555, 1649, 1927
ScrFI	CCNGG	6 cut(s)	127, 624, 629, 783, 1064, 1126
SduI	GDGCHC	8 cut(s)	44, 57, 134, 279, 303, 624, 930, 1313
SfaNI	GCATC	2 cut(s)	598, 1033
SfcI	CTRYAG	1 cut(s)	169
Sfr274I	CTCGAG	1 cut(s)	1130
SgrAI	CRCCGGYG	1 cut(s)	2020
SinI	GGWCC	5 cut(s)	313, 652, 1003, 1105, 1117
SlaI	CTCGAG	1 cut(s)	1130
SmlI	CTYRAG	3 cut(s)	986, 1109, 1130
SmoI	CTYRAG	3 cut(s)	986, 1109, 1130
Sse9I	AATT	1 cut(s)	550
SspMI	CTAG	5 cut(s)	6, 867, 1244, 1296, 1944
SstI	GAGCTC	4 cut(s)	57, 134, 279, 303
StyD4I	CCNGG	6 cut(s)	125, 622, 627, 781, 1062, 1124
StyI	CCWWGG	3 cut(s)	111, 424, 742
TaaI	ACNGT	7 cut(s)	36, 80, 170, 434, 692, 1315, 1450
TaiI	ACGT	7 cut(s)	47, 330, 723, 895, 1104, 1236, 1411
TaqII	GACCGA	1 cut(s)	674
TasI	AATT	1 cut(s)	550
TfiI	GAWTC	3 cut(s)	230, 512, 1067
Tru1I	TTAA	5 cut(s)	120, 972, 981, 1524, 1710
Tru9I	TTAA	5 cut(s)	120, 972, 981, 1524, 1710
TscAI	CASTG	2 cut(s)	163, 1320
TseFI	GTSAC	2 cut(s)	80, 1930
TseI	GCWGC	3 cut(s)	214, 400, 915
Tsp45I	GTSAC	2 cut(s)	80, 1930
TspDTI	ATGAA	3 cut(s)	1289, 1763, 1848
TspGWI	ACGGA	5 cut(s)	94, 104, 1027, 1706, 1922
TspRI	CASTG	2 cut(s)	163, 1320
Tth111I	GACNNNGTC	1 cut(s)	104
VpaK11BI	GGWCC	5 cut(s)	313, 652, 1003, 1105, 1117
XbaI	TCTAGA	1 cut(s)	1243
XcmI	CCANNNNNNNNNTGG	1 cut(s)	431
XhoI	CTCGAG	1 cut(s)	1130
XmiI	GTMKAC	2 cut(s)	778, 1559
XspI	CTAG	5 cut(s)	6, 867, 1244, 1296, 1944
ZraI	GACGTC	1 cut(s)	893
Zsp2I	ATGCAT	1 cut(s)	1426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.