Rmu_co8095392.1_g000001
MYB Family

Bromodomain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8095392.1
OG0006248
Physical Location & Seq
Forward (+)
95 .. 436
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8095392.1_g000001.1.cds

Sequence Viewer

Length: 342 bp
atggctagtagggaacacgaaacgagcgcgcaaccgtggggcacgttagaggagctcttgctggtgtccgccgtgaaccgtcacggcacgaagcgctgggactccgtcgccaaggaggttaagtcccggagctccacgacgacaacggcggtgttcactgctcagaactgtagggacaagttcgacgacctcaaacgccgcttcgtcgtctcgcggcaaaacgacgccgaatcgcgaagcggcgacgacgacgggctggcgtttatggttgacgagctccgcaggctccgagtcgaggagctccgccgcgaggtccgccgtcgcgacgtttcgatcgtgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain Myb_DNA-binding

Protein Analysis

113

Amino Acids

13.07

Weight (kDa)

9.03

Isoelectric Point (pI)

75.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 5 cut(s) 29, 214, 235, 309, 324
AciI CCGC 9 cut(s) 69, 149, 199, 214, 240, 280, 304, 307, 316
AcyI GRCGYC 1 cut(s) 225
AfeI AGCGCT 1 cut(s) 95
AfiI CCNNNNNNNGG 2 cut(s) 295, 310
AluBI AGCT 4 cut(s) 55, 132, 277, 301
AluI AGCT 4 cut(s) 55, 132, 277, 301
Alw21I GWGCWC 4 cut(s) 57, 134, 279, 303
Alw26I GTCTC 1 cut(s) 214
Aor51HI AGCGCT 1 cut(s) 95
AspLEI GCGC 3 cut(s) 29, 31, 96
AspS9I GGNCC 1 cut(s) 313
AsuC2I CCSGG 1 cut(s) 127
AvaII GGWCC 1 cut(s) 313
BaeGI GKGCMC 1 cut(s) 44
BanII GRGCYC 4 cut(s) 57, 134, 279, 303
Bbv12I GWGCWC 4 cut(s) 57, 134, 279, 303
BceAI ACGGC 4 cut(s) 56, 100, 162, 303
BcnI CCSGG 1 cut(s) 127
BcoDI GTCTC 1 cut(s) 214
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 169
BfoI RGCGCY 1 cut(s) 97
BisI GCNGC 4 cut(s) 199, 215, 241, 307
BlsI GCNGC 4 cut(s) 200, 216, 242, 308
Bme1390I CCNGG 1 cut(s) 127
Bme18I GGWCC 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 313
BmiI GGNNCC 1 cut(s) 287
BmrFI CCNGG 1 cut(s) 127
BpuMI CCSGG 1 cut(s) 127
BsaHI GRCGYC 1 cut(s) 225
BsaJI CCNNGG 2 cut(s) 35, 111
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 2 cut(s) 295, 310
BseDI CCNNGG 2 cut(s) 35, 111
BseLI CCNNNNNNNGG 2 cut(s) 295, 310
BseMII CTCAG 1 cut(s) 176
BsePI GCGCGC 1 cut(s) 27
BseRI GAGGAG 2 cut(s) 65, 311
BseSI GKGCMC 1 cut(s) 44
BseYI CCCAGC 1 cut(s) 96
Bsh1236I CGCG 5 cut(s) 29, 214, 235, 309, 324
Bsh1285I CGRYCG 1 cut(s) 336
BsiEI CGRYCG 1 cut(s) 336
BsiHKAI GWGCWC 4 cut(s) 57, 134, 279, 303
BsiSI CCGG 1 cut(s) 127
BslFI GGGAC 3 cut(s) 109, 113, 188
BslI CCNNNNNNNGG 2 cut(s) 295, 310
BsmAI GTCTC 1 cut(s) 214
BsmBI CGTCTC 1 cut(s) 214
BsmFI GGGAC 3 cut(s) 109, 113, 188
Bsp1286I GDGCHC 5 cut(s) 44, 57, 134, 279, 303
Bsp143I GATC 1 cut(s) 333
Bsp68I TCGCGA 2 cut(s) 235, 324
BspACI CCGC 9 cut(s) 69, 149, 199, 214, 240, 280, 304, 307, 316
BspCNI CTCAG 1 cut(s) 175
BspFNI CGCG 5 cut(s) 29, 214, 235, 309, 324
BspLI GGNNCC 1 cut(s) 287
BssECI CCNNGG 2 cut(s) 35, 111
BssHII GCGCGC 1 cut(s) 27
BssMI GATC 1 cut(s) 333
BssNI GRCGYC 1 cut(s) 225
BssT1I CCWWGG 1 cut(s) 111
Bst4CI ACNGT 3 cut(s) 36, 80, 170
BstACI GRCGYC 1 cut(s) 225
BstC8I GCNNGC 3 cut(s) 29, 258, 284
BstDEI CTNAG 1 cut(s) 162
BstDSI CCRYGG 1 cut(s) 35
BstFNI CGCG 5 cut(s) 29, 214, 235, 309, 324
BstH2I RGCGCY 1 cut(s) 97
BstHHI GCGC 3 cut(s) 29, 31, 96
BstKTI GATC 1 cut(s) 336
BstMAI GTCTC 1 cut(s) 214
BstMBI GATC 1 cut(s) 333
BstMCI CGRYCG 1 cut(s) 336
BstMWI GCNNNNNNNGC 3 cut(s) 93, 283, 315
BstSCI CCNGG 1 cut(s) 125
BstSFI CTRYAG 1 cut(s) 169
BstSLI GKGCMC 1 cut(s) 44
BstUI CGCG 5 cut(s) 29, 214, 235, 309, 324
BtgI CCRYGG 1 cut(s) 35
BtsI GCAGTG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 156
BtuMI TCGCGA 2 cut(s) 235, 324
Cac8I GCNNGC 3 cut(s) 29, 258, 284
CfoI GCGC 3 cut(s) 29, 31, 96
Cfr13I GGNCC 1 cut(s) 313
CseI GACGC 1 cut(s) 233
CviJI RGCY 7 cut(s) 5, 55, 132, 256, 277, 286, 301
CviKI_1 RGCY 7 cut(s) 5, 55, 132, 256, 277, 286, 301
DdeI CTNAG 1 cut(s) 162
DpnI GATC 1 cut(s) 335
DpnII GATC 1 cut(s) 333
EciI GGCGGA 3 cut(s) 58, 293, 305
Ecl136II GAGCTC 4 cut(s) 55, 132, 277, 301
Eco130I CCWWGG 1 cut(s) 111
Eco24I GRGCYC 4 cut(s) 57, 134, 279, 303
Eco47I GGWCC 1 cut(s) 313
Eco47III AGCGCT 1 cut(s) 95
Eco53kI GAGCTC 4 cut(s) 55, 132, 277, 301
EcoICRI GAGCTC 4 cut(s) 55, 132, 277, 301
EcoT14I CCWWGG 1 cut(s) 111
EcoT38I GRGCYC 4 cut(s) 57, 134, 279, 303
ErhI CCWWGG 1 cut(s) 111
Esp3I CGTCTC 1 cut(s) 214
FaiI YATR 1 cut(s) 266
FaqI GGGAC 3 cut(s) 109, 113, 188
Fnu4HI GCNGC 4 cut(s) 199, 215, 241, 307
FriOI GRGCYC 4 cut(s) 57, 134, 279, 303
Fsp4HI GCNGC 4 cut(s) 199, 215, 241, 307
FspBI CTAG 1 cut(s) 6
GlaI GCGC 3 cut(s) 28, 30, 95
GluI GCNGC 4 cut(s) 199, 215, 241, 307
GsaI CCCAGC 1 cut(s) 100
HaeII RGCGCY 1 cut(s) 97
HapII CCGG 1 cut(s) 127
HgaI GACGC 1 cut(s) 233
HhaI GCGC 3 cut(s) 29, 31, 96
Hin1I GRCGYC 1 cut(s) 225
Hin6I GCGC 3 cut(s) 27, 29, 94
HinP1I GCGC 3 cut(s) 27, 29, 94
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HinfI GANTC 3 cut(s) 101, 230, 291
HpaII CCGG 1 cut(s) 127
Hpy166II GTNNAC 3 cut(s) 76, 156, 271
Hpy188I TCNGA 2 cut(s) 165, 290
Hpy188III TCNNGA 2 cut(s) 234, 323
Hpy8I GTNNAC 3 cut(s) 76, 156, 271
HpyCH4III ACNGT 3 cut(s) 36, 80, 170
HpyCH4IV ACGT 2 cut(s) 44, 327
HpyF10VI GCNNNNNNNGC 3 cut(s) 93, 283, 315
HpyF3I CTNAG 1 cut(s) 162
HpySE526I ACGT 2 cut(s) 44, 327
Hsp92I GRCGYC 1 cut(s) 225
HspAI GCGC 3 cut(s) 27, 29, 94
Kzo9I GATC 1 cut(s) 333
LmnI GCTCC 7 cut(s) 52, 129, 137, 282, 291, 298, 306
LpnPI CCDG 5 cut(s) 47, 82, 140, 242, 268
MaeI CTAG 1 cut(s) 6
MaeII ACGT 2 cut(s) 44, 327
MaeIII GTNAC 1 cut(s) 80
MalI GATC 1 cut(s) 335
MboI GATC 1 cut(s) 333
MhlI GDGCHC 5 cut(s) 44, 57, 134, 279, 303
MlyI GAGTC 2 cut(s) 95, 300
MnlI CCTC 5 cut(s) 43, 109, 200, 289, 304
MseI TTAA 1 cut(s) 120
MspI CCGG 1 cut(s) 127
MspR9I CCNGG 1 cut(s) 127
MvnI CGCG 5 cut(s) 29, 214, 235, 309, 324
MwoI GCNNNNNNNGC 3 cut(s) 93, 283, 315
NciI CCSGG 1 cut(s) 127
NdeII GATC 1 cut(s) 333
NlaIV GGNNCC 1 cut(s) 287
NmuCI GTSAC 1 cut(s) 80
NruI TCGCGA 2 cut(s) 235, 324
PauI GCGCGC 1 cut(s) 27
PcsI WCGNNNNNNNCGW 1 cut(s) 333
PfeI GAWTC 1 cut(s) 230
PflFI GACNNNGTC 1 cut(s) 104
PfoI TCCNGGA 1 cut(s) 125
PkrI GCNGC 4 cut(s) 200, 216, 242, 308
Ple19I CGATCG 1 cut(s) 336
PleI GAGTC 2 cut(s) 95, 299
PpsI GAGTC 2 cut(s) 95, 299
Psp124BI GAGCTC 4 cut(s) 57, 134, 279, 303
PspFI CCCAGC 1 cut(s) 96
PspN4I GGNNCC 1 cut(s) 287
PspPI GGNCC 1 cut(s) 313
PsyI GACNNNGTC 1 cut(s) 104
PteI GCGCGC 1 cut(s) 27
PvuI CGATCG 1 cut(s) 336
RruI TCGCGA 2 cut(s) 235, 324
SacI GAGCTC 4 cut(s) 57, 134, 279, 303
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 4 cut(s) 199, 215, 241, 307
Sau3AI GATC 1 cut(s) 333
Sau96I GGNCC 1 cut(s) 313
SchI GAGTC 2 cut(s) 95, 300
ScrFI CCNGG 1 cut(s) 127
SduI GDGCHC 5 cut(s) 44, 57, 134, 279, 303
SetI ASST 9 cut(s) 47, 57, 120, 134, 192, 279, 303, 315, 330
SfcI CTRYAG 1 cut(s) 169
SinI GGWCC 1 cut(s) 313
SsiI CCGC 9 cut(s) 69, 149, 199, 214, 240, 280, 304, 307, 316
SspMI CTAG 1 cut(s) 6
SstI GAGCTC 4 cut(s) 57, 134, 279, 303
StyD4I CCNGG 1 cut(s) 125
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 3 cut(s) 36, 80, 170
TaiI ACGT 2 cut(s) 47, 330
TaqI TCGA 3 cut(s) 183, 294, 332
TauI GCSGC 4 cut(s) 201, 217, 243, 309
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TscAI CASTG 1 cut(s) 163
TseFI GTSAC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 80
TspGWI ACGGA 1 cut(s) 94
TspRI CASTG 1 cut(s) 163
Tth111I GACNNNGTC 1 cut(s) 104
VpaK11BI GGWCC 1 cut(s) 313
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.