Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002645

Physical Location & Seq

Genomic Coordinates Forward (+)

18379527 .. 18381959

Gene Structure 2433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G44520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGTGGCGAAGATCTGTTGTTTATCGTTTCTCTTCAAGAATCTCTGTTTCTTCTTCGTTACCAAACCCTAGACTGATTCCTTGGTCCCGCGAATTATGTGCCGTTAATAGCTTCTCCCAGCCTCCGGTCTCGACGGAATCAACTGCTAAGTTAGGGATCACTGGTGTTAGATCTGATGCCAATCGAGTTTTTGCCACTGCTACTGCCGCCGCTACAGCTACAGCTACCACCGGTGAGATTTCGTCTAGAGTTGCGGCTTTGGCTGGATTAGGGCATCACTACGCTCGTTGTTATTGGGAGCTTTCTAAAGCTAAACTTAGTATGCTTGTGGTTGCAACTTCTGGAACTGGGTATATTCTGGGTACGGGAAATGCTGCAATTAGCTTCCCGGGGCTTTGTTACACATGTGCAGGAACCATGATGATTGCTGCATCTGCTAATTCCTTGAATCAGATTTTTGAGATAAGCAATGATTCTAAGATGAAAAGAACGATGCTAAGGCCATTGCCTTCAGGACGTATTAGTGTTCCACACGCTGTTGCATGGGCTACTATTGCTGGTGCTTCTGGTGCTTGTTTGTTGGCCAGCAAGACTAATATGTTGGCTGCTGGACTTGCATCTGCCAATCTTGTACTTTATGCGTTTGTTTATACTCCGTTGAAGCAACTTCACCCTATCAATACATGGGTTGGCGCTGTTGTTGGTGCTATCCCACCCTTGCTTGGGTGGGCGGCAGCGTCTGGTCAGATTTCATACAATTCGATGATTCTTCCAGCTGCTCTTTACTTTTGGCAGATACCTCATTTTATGGCCCTTGCACATCTCTGCCGCAATGATTATGCAGCTGGAGGTTACAAGATGTTGTCACTCTTTGATCCGTCAGGGAAGAGAATAGCAGCAGTGGCTCTAAGGAACTGCTTTTACATGATCCCTCTCGGTTTCATCGCCTATGACTGGGGGTTAACCTCAAGTTGGTTTTGCCTCGAATCAACACTTCTCACACTAGCAATCGCTGCAACAGCATTTTCATTCTACCGAGACCGGACCATGCATAAAGCAAGGAAAATGTTCCATGCCAGTCTTCTCTTCCTTCCTGTTTTCATGTCTGGTCTTCTTCTACACCGTGTCTCTAATGATAATCAGCAACAACTCGTAGAAGAAGCCGGATTAACAAATTCTGTATCTGGTGAAGTCAAAACTCAGAGGCGAAAGAAACGTGTGGCTCAACCTCCGGTGGCTTATGCCTCTGCTGCACCGTTTCCTTTCCTCCCAGCTCCTTCCTTCTACTCTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0015980 GO:0016740 GO:0016765 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00190 ko00860 ko01100 ko01110 ko04714 map00190 map00860 map01100 map01110 map04714

Pfam Domains

Protein Families

UbiA

Protein Analysis

431

Amino Acids

46.47

Weight (kDa)

9.87

Isoelectric Point (pI)

45.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UbiA	PF01040	114 - 360	1.3e-47	UbiA prenyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44520
fragaria_vesca	FvH4_2g12720 FvH4_2g12720
malus_domestica	MD08G1235300.v1.1 MD15G1426600.v1.1
prunus_persica	Prupe.1G571600_v2.0.a1
pyrus_communis	pycom08g20360 pycom15g37750 pycom15g37820 pycom15g37850
rosa_chinensis	RchiOBHm_Chr6g0271171 RchiOBHm_Chr6g0273481 RchiOBHm_Chr7g0200821
rosa_laevigata	RLG00000007702 RLG00000013613 RLG00000030224
rosa_multiflora	Rmu_sc0000367.1_g000112 Rmu_sc0004127.1_g000003 Rmu_sc0005891.1_g000033 Rmu_sc0010380.1_g000010 Rmu_sc0010380.1_g000011
rosa_roxburghii	Rroxscaffold_166G00440760 Rroxscaffold_4G00302880 Rroxscaffold_6G00423080 Rroxscaffold_7G00195280
rosa_rugosa	Rorug03G0044000 Rorug06G0075700 Rorug06G0075800
rosa_samantha	Rh4DG151900 Rh6AG190400 Rh6BG193900 Rh6CG179300 Rh6CG193400 Rh6DG171000 Rh6DG185000 Rh7DG191800
rosa_wichuraiana	Rw0G020450 Rw1G038810 Rw6G016660 Rw7G013720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	90
AciI	CCGC	6 cut(s)	88, 207, 210, 254, 731, 829
AclWI	GGATC	3 cut(s)	164, 869, 922
AcoI	YGGCCR	1 cut(s)	582
AcsI	RAATTY	1 cut(s)	1174
AcuI	CTGAAG	1 cut(s)	495
AfaI	GTAC	2 cut(s)	364, 633
AfiI	CCNNNNNNNGG	5 cut(s)	124, 722, 723, 954, 972
AflIII	ACRYGT	2 cut(s)	404, 1216
AgeI	ACCGGT	1 cut(s)	230
AgsI	TTSAA	3 cut(s)	36, 448, 661
AluBI	AGCT	9 cut(s)	111, 218, 224, 301, 311, 384, 776, 845, 1274
AluI	AGCT	9 cut(s)	111, 218, 224, 301, 311, 384, 776, 845, 1274
Alw26I	GTCTC	3 cut(s)	133, 1032, 1132
AlwI	GGATC	3 cut(s)	164, 869, 922
AlwNI	CAGNNNCTG	1 cut(s)	740
Ama87I	CYCGRG	1 cut(s)	388
AoxI	GGCC	3 cut(s)	500, 582, 810
ApeKI	GCWGC	9 cut(s)	374, 428, 605, 734, 776, 842, 896, 1013, 1250
ApoI	RAATTY	1 cut(s)	1174
AsiGI	ACCGGT	1 cut(s)	230
Asp700I	GAANNNNTTC	1 cut(s)	1067
AspLEI	GCGC	1 cut(s)	695
AspS9I	GGNCC	3 cut(s)	84, 811, 1044
AsuC2I	CCSGG	2 cut(s)	389, 390
AsuHPI	GGTGA	3 cut(s)	245, 662, 1199
AvaI	CYCGRG	1 cut(s)	388
AvaII	GGWCC	2 cut(s)	84, 1044
BalI	TGGCCA	1 cut(s)	584
BbsI	GAAGAC	2 cut(s)	1073, 1103
BbvI	GCAGC	9 cut(s)	361, 415, 592, 746, 763, 854, 908, 1000, 1237
BceAI	ACGGC	1 cut(s)	86
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BcnI	CCSGG	2 cut(s)	389, 390
BcoDI	GTCTC	3 cut(s)	133, 1032, 1132
BfaI	CTAG	3 cut(s)	69, 246, 1004
BfmI	CTRYAG	2 cut(s)	213, 219
BfoI	RGCGCY	1 cut(s)	696
BglII	AGATCT	2 cut(s)	11, 170
Bme1390I	CCNGG	2 cut(s)	389, 390
Bme18I	GGWCC	2 cut(s)	84, 1044
BmeT110I	CYCGRG	1 cut(s)	388
BmgT120I	GGNCC	3 cut(s)	84, 811, 1044
BmiI	GGNNCC	2 cut(s)	86, 415
BmrFI	CCNGG	2 cut(s)	389, 390
BmrI	ACTGGG	2 cut(s)	357, 964
BmsI	GCATC	5 cut(s)	166, 283, 440, 483, 626
BmuI	ACTGGG	2 cut(s)	357, 964
BpiI	GAAGAC	2 cut(s)	1073, 1103
BpmI	CTGGAG	1 cut(s)	867
Bpu10I	CCTNAGC	1 cut(s)	497
BpuEI	CTTGAG	1 cut(s)	952
BpuMI	CCSGG	2 cut(s)	389, 390
BsaBI	GATNNNNATC	1 cut(s)	180
BsaI	GGTCTC	2 cut(s)	133, 1032
BsaJI	CCNNGG	3 cut(s)	80, 388, 389
BsaWI	WCCGGW	4 cut(s)	124, 230, 1041, 1231
Bsc4I	CCNNNNNNNGG	5 cut(s)	124, 722, 723, 954, 972
Bse118I	RCCGGY	1 cut(s)	230
Bse1I	ACTGG	4 cut(s)	166, 352, 959, 1077
Bse3DI	GCAATG	3 cut(s)	475, 503, 838
Bse8I	GATNNNNATC	1 cut(s)	180
BseDI	CCNNGG	3 cut(s)	80, 388, 389
BseJI	GATNNNNATC	1 cut(s)	180
BseLI	CCNNNNNNNGG	5 cut(s)	124, 722, 723, 954, 972
BseMI	GCAATG	3 cut(s)	475, 503, 838
BseMII	CTCAG	1 cut(s)	1214
BseNI	ACTGG	4 cut(s)	166, 352, 959, 1077
BseXI	GCAGC	9 cut(s)	361, 415, 592, 746, 763, 854, 908, 1000, 1237
BseYI	CCCAGC	2 cut(s)	117, 1270
BsgI	GTGCAG	2 cut(s)	429, 1236
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	3 cut(s)	502, 584, 812
BshTI	ACCGGT	1 cut(s)	230
BsiHKCI	CYCGRG	1 cut(s)	388
BsiSI	CCGG	6 cut(s)	125, 231, 389, 1042, 1164, 1232
BslFI	GGGAC	1 cut(s)	70
BslI	CCNNNNNNNGG	5 cut(s)	124, 722, 723, 954, 972
BsmAI	GTCTC	3 cut(s)	133, 1032, 1132
BsmFI	GGGAC	1 cut(s)	70
BsnI	GGCC	3 cut(s)	502, 584, 812
Bso31I	GGTCTC	2 cut(s)	133, 1032
BsoBI	CYCGRG	1 cut(s)	388
Bsp143I	GATC	5 cut(s)	11, 156, 170, 874, 927
BspACI	CCGC	6 cut(s)	88, 207, 210, 254, 731, 829
BspANI	GGCC	3 cut(s)	502, 584, 812
BspCNI	CTCAG	1 cut(s)	1213
BspFNI	CGCG	1 cut(s)	90
BspLI	GGNNCC	2 cut(s)	86, 415
BspPI	GGATC	3 cut(s)	164, 869, 922
BspTNI	GGTCTC	2 cut(s)	133, 1032
BsrDI	GCAATG	3 cut(s)	475, 503, 838
BsrFI	RCCGGY	1 cut(s)	230
BsrI	ACTGG	4 cut(s)	166, 352, 959, 1077
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	3 cut(s)	80, 388, 389
BssMI	GATC	5 cut(s)	11, 156, 170, 874, 927
BssT1I	CCWWGG	1 cut(s)	80
Bst4CI	ACNGT	2 cut(s)	1124, 1257
Bst6I	CTCTTC	3 cut(s)	37, 881, 1091
BstAPI	GCANNNNNTGC	1 cut(s)	1013
BstC8I	GCNNGC	1 cut(s)	586
BstDEI	CTNAG	6 cut(s)	147, 317, 477, 497, 908, 1200
BstFNI	CGCG	1 cut(s)	90
BstH2I	RGCGCY	1 cut(s)	696
BstHHI	GCGC	1 cut(s)	695
BstKTI	GATC	5 cut(s)	14, 159, 173, 877, 930
BstMAI	GTCTC	3 cut(s)	133, 1032, 1132
BstMBI	GATC	5 cut(s)	11, 156, 170, 874, 927
BstNSI	RCATGY	1 cut(s)	408
BstSCI	CCNGG	2 cut(s)	387, 388
BstSFI	CTRYAG	2 cut(s)	213, 219
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	9 cut(s)	361, 415, 592, 746, 763, 854, 908, 1000, 1237
BstV2I	GAAGAC	2 cut(s)	1073, 1103
BstX2I	RGATCY	2 cut(s)	11, 170
BstYI	RGATCY	2 cut(s)	11, 170
BsuRI	GGCC	3 cut(s)	502, 584, 812
BtgZI	GCGATG	1 cut(s)	928
BtsI	GCAGTG	2 cut(s)	195, 906
BtsIMutI	CAGTG	3 cut(s)	159, 195, 906
Cac8I	GCNNGC	1 cut(s)	586
CaiI	CAGNNNCTG	1 cut(s)	740
CfoI	GCGC	1 cut(s)	695
Cfr10I	RCCGGY	1 cut(s)	230
Cfr13I	GGNCC	3 cut(s)	84, 811, 1044
Cfr9I	CCCGGG	1 cut(s)	388
CseI	GACGC	1 cut(s)	726
Csp6I	GTAC	2 cut(s)	363, 632
CspAI	ACCGGT	1 cut(s)	230
CviAII	CATG	9 cut(s)	405, 418, 543, 684, 925, 1048, 1073, 1102, 1293
CviQI	GTAC	2 cut(s)	363, 632
DdeI	CTNAG	6 cut(s)	147, 317, 477, 497, 908, 1200
DpnI	GATC	5 cut(s)	13, 158, 172, 876, 929
DpnII	GATC	5 cut(s)	11, 156, 170, 874, 927
EaeI	YGGCCR	1 cut(s)	582
Eam1104I	CTCTTC	3 cut(s)	37, 881, 1091
EarI	CTCTTC	3 cut(s)	37, 881, 1091
Eco130I	CCWWGG	1 cut(s)	80
Eco31I	GGTCTC	2 cut(s)	133, 1032
Eco47I	GGWCC	2 cut(s)	84, 1044
Eco57I	CTGAAG	1 cut(s)	495
Eco88I	CYCGRG	1 cut(s)	388
EcoT14I	CCWWGG	1 cut(s)	80
EcoT22I	ATGCAT	1 cut(s)	1053
ErhI	CCWWGG	1 cut(s)	80
FaeI	CATG	9 cut(s)	408, 421, 546, 687, 928, 1051, 1076, 1105, 1296
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FaqI	GGGAC	1 cut(s)	70
FatI	CATG	9 cut(s)	404, 417, 542, 683, 924, 1047, 1072, 1101, 1292
FauI	CCCGC	1 cut(s)	95
FspBI	CTAG	3 cut(s)	69, 246, 1004
GlaI	GCGC	1 cut(s)	694
GsaI	CCCAGC	2 cut(s)	121, 1274
GsuI	CTGGAG	1 cut(s)	867
HaeII	RGCGCY	1 cut(s)	696
HaeIII	GGCC	3 cut(s)	502, 584, 812
HapII	CCGG	6 cut(s)	125, 231, 389, 1042, 1164, 1232
HgaI	GACGC	1 cut(s)	726
HhaI	GCGC	1 cut(s)	695
Hin1II	CATG	9 cut(s)	408, 421, 546, 687, 928, 1051, 1076, 1105, 1296
Hin6I	GCGC	1 cut(s)	693
HinP1I	GCGC	1 cut(s)	693
HincII	GTYRAC	1 cut(s)	963
HindII	GTYRAC	1 cut(s)	963
HinfI	GANTC	7 cut(s)	39, 76, 137, 448, 473, 766, 986
HpaI	GTTAAC	1 cut(s)	963
HpaII	CCGG	6 cut(s)	125, 231, 389, 1042, 1164, 1232
HphI	GGTGA	3 cut(s)	245, 662, 1199
Hpy166II	GTNNAC	1 cut(s)	963
Hpy188I	TCNGA	4 cut(s)	175, 453, 747, 1203
Hpy188III	TCNNGA	5 cut(s)	36, 130, 246, 342, 513
Hpy8I	GTNNAC	1 cut(s)	963
Hpy99I	CGWCG	1 cut(s)	136
HpyAV	CCTTC	4 cut(s)	519, 1100, 1287, 1291
HpyCH4III	ACNGT	2 cut(s)	1124, 1257
HpyCH4IV	ACGT	2 cut(s)	517, 1216
HpyF3I	CTNAG	6 cut(s)	147, 317, 477, 497, 908, 1200
HpySE526I	ACGT	2 cut(s)	517, 1216
Hsp92II	CATG	9 cut(s)	408, 421, 546, 687, 928, 1051, 1076, 1105, 1296
HspAI	GCGC	1 cut(s)	693
KspAI	GTTAAC	1 cut(s)	963
Kzo9I	GATC	5 cut(s)	11, 156, 170, 874, 927
LmnI	GCTCC	2 cut(s)	298, 1279
Lsp1109I	GCAGC	9 cut(s)	361, 415, 592, 746, 763, 854, 908, 1000, 1237
LweI	GCATC	5 cut(s)	166, 283, 440, 483, 626
MaeI	CTAG	3 cut(s)	69, 246, 1004
MaeII	ACGT	2 cut(s)	517, 1216
MaeIII	GTNAC	4 cut(s)	57, 398, 851, 864
MalI	GATC	5 cut(s)	13, 158, 172, 876, 929
MboI	GATC	5 cut(s)	11, 156, 170, 874, 927
MflI	RGATCY	2 cut(s)	11, 170
MlsI	TGGCCA	1 cut(s)	584
MluCI	AATT	5 cut(s)	92, 378, 439, 757, 1174
MluNI	TGGCCA	1 cut(s)	584
Mox20I	TGGCCA	1 cut(s)	584
Mph1103I	ATGCAT	1 cut(s)	1053
MroXI	GAANNNNTTC	1 cut(s)	1067
MscI	TGGCCA	1 cut(s)	584
MseI	TTAA	3 cut(s)	105, 962, 1169
Msp20I	TGGCCA	1 cut(s)	584
MspA1I	CMGCKG	2 cut(s)	776, 845
MspI	CCGG	6 cut(s)	125, 231, 389, 1042, 1164, 1232
MspR9I	CCNGG	2 cut(s)	389, 390
MvnI	CGCG	1 cut(s)	90
NciI	CCSGG	2 cut(s)	389, 390
NdeII	GATC	5 cut(s)	11, 156, 170, 874, 927
NlaIII	CATG	9 cut(s)	408, 421, 546, 687, 928, 1051, 1076, 1105, 1296
NlaIV	GGNNCC	2 cut(s)	86, 415
NmuCI	GTSAC	1 cut(s)	864
NsiI	ATGCAT	1 cut(s)	1053
NspI	RCATGY	1 cut(s)	408
PciI	ACATGT	1 cut(s)	404
PdmI	GAANNNNTTC	1 cut(s)	1067
PfeI	GAWTC	7 cut(s)	39, 76, 137, 448, 473, 766, 986
PinAI	ACCGGT	1 cut(s)	230
PscI	ACATGT	1 cut(s)	404
PspFI	CCCAGC	2 cut(s)	117, 1270
PspN4I	GGNNCC	2 cut(s)	86, 415
PspPI	GGNCC	3 cut(s)	84, 811, 1044
PsrI	GAACNNNNNNTAC	2 cut(s)	905, 937
PstNI	CAGNNNCTG	1 cut(s)	740
PsuI	RGATCY	2 cut(s)	11, 170
PvuII	CAGCTG	2 cut(s)	776, 845
RsaI	GTAC	2 cut(s)	364, 633
RsaNI	GTAC	2 cut(s)	363, 632
SaqAI	TTAA	3 cut(s)	105, 962, 1169
Sau3AI	GATC	5 cut(s)	11, 156, 170, 874, 927
Sau96I	GGNCC	3 cut(s)	84, 811, 1044
ScrFI	CCNGG	2 cut(s)	389, 390
SfaNI	GCATC	5 cut(s)	166, 283, 440, 483, 626
SfcI	CTRYAG	2 cut(s)	213, 219
SgrAI	CRCCGGYG	1 cut(s)	230
SinI	GGWCC	2 cut(s)	84, 1044
SmaI	CCCGGG	1 cut(s)	390
SmlI	CTYRAG	1 cut(s)	967
SmoI	CTYRAG	1 cut(s)	967
Sse9I	AATT	5 cut(s)	92, 378, 439, 757, 1174
SsiI	CCGC	6 cut(s)	88, 207, 210, 254, 731, 829
SspMI	CTAG	3 cut(s)	69, 246, 1004
StyD4I	CCNGG	2 cut(s)	387, 388
StyI	CCWWGG	1 cut(s)	80
TaaI	ACNGT	2 cut(s)	1124, 1257
TaiI	ACGT	2 cut(s)	520, 1219
TaqI	TCGA	4 cut(s)	131, 184, 761, 984
TasI	AATT	5 cut(s)	92, 378, 439, 757, 1174
TatI	WGTACW	1 cut(s)	631
TauI	GCSGC	5 cut(s)	209, 212, 257, 734, 831
TfiI	GAWTC	7 cut(s)	39, 76, 137, 448, 473, 766, 986
Tru1I	TTAA	3 cut(s)	105, 962, 1169
Tru9I	TTAA	3 cut(s)	105, 962, 1169
TscAI	CASTG	3 cut(s)	166, 202, 906
TseFI	GTSAC	1 cut(s)	864
TseI	GCWGC	9 cut(s)	374, 428, 605, 734, 776, 842, 896, 1013, 1250
Tsp45I	GTSAC	1 cut(s)	864
TspDTI	ATGAA	5 cut(s)	497, 741, 931, 1017, 1090
TspGWI	ACGGA	3 cut(s)	149, 645, 867
TspMI	CCCGGG	1 cut(s)	388
TspRI	CASTG	3 cut(s)	166, 202, 906
VpaK11BI	GGWCC	2 cut(s)	84, 1044
XapI	RAATTY	1 cut(s)	1174
XbaI	TCTAGA	1 cut(s)	245
XceI	RCATGY	1 cut(s)	408
XmaI	CCCGGG	1 cut(s)	388
XmnI	GAANNNNTTC	1 cut(s)	1067
XspI	CTAG	3 cut(s)	69, 246, 1004
Zsp2I	ATGCAT	1 cut(s)	1053

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.