Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010380.1

Orthogroup ID

OG0002645

Physical Location & Seq

Genomic Coordinates Forward (+)

27933 .. 28250

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010380.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atgtggaggaactcggtgagtttctcgtccaagttgatcaattccaacaagtcgctgttcaattcttccagttgctctggagcaagcgacgtcgttcggccactgctgcactgccgctccgaattccacccctattcctcttcacccccgtcgtcttcggattatctcaaactaggttttcagccgtccgatggactcccaggcctttcggctaccgccgttgatctcgcgtctttggcctccaaatctgcccagctgactcggcactatggccgctgctattgggagctctccaaagctcgcctcaggtatatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0015980 GO:0016740 GO:0016765 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00190 ko00860 ko01100 ko01110 ko04714 map00190 map00860 map01100 map01110 map04714

Pfam Domains

Protein Families

UbiA

Protein Analysis

105

Amino Acids

11.58

Weight (kDa)

9.55

Isoelectric Point (pI)

55.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44520
fragaria_vesca	FvH4_2g12720 FvH4_2g12720
malus_domestica	MD08G1235300.v1.1 MD15G1426600.v1.1
prunus_persica	Prupe.1G571600_v2.0.a1
pyrus_communis	pycom08g20360 pycom15g37750 pycom15g37820 pycom15g37850
rosa_chinensis	RchiOBHm_Chr6g0271171 RchiOBHm_Chr6g0273481 RchiOBHm_Chr7g0200821
rosa_laevigata	RLG00000007702 RLG00000013613 RLG00000030224
rosa_multiflora	Rmu_sc0000367.1_g000112 Rmu_sc0004127.1_g000003 Rmu_sc0005891.1_g000033 Rmu_sc0010380.1_g000010 Rmu_sc0010380.1_g000011
rosa_roxburghii	Rroxscaffold_166G00440760 Rroxscaffold_4G00302880 Rroxscaffold_6G00423080 Rroxscaffold_7G00195280
rosa_rugosa	Rorug03G0044000 Rorug06G0075700 Rorug06G0075800
rosa_samantha	Rh4DG151900 Rh6AG190400 Rh6BG193900 Rh6CG179300 Rh6CG193400 Rh6DG171000 Rh6DG185000 Rh7DG191800
rosa_wichuraiana	Rw0G020450 Rw1G038810 Rw6G016660 Rw7G013720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	93
AccBSI	CCGCTC	1 cut(s)	117
AccII	CGCG	1 cut(s)	230
AciI	CCGC	3 cut(s)	115, 216, 274
AcoI	YGGCCR	2 cut(s)	98, 271
AcsI	RAATTY	1 cut(s)	122
AcyI	GRCGYC	1 cut(s)	90
AfiI	CCNNNNNNNGG	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	199
AluBI	AGCT	3 cut(s)	256, 289, 299
AluI	AGCT	3 cut(s)	256, 289, 299
Alw21I	GWGCWC	1 cut(s)	291
AoxI	GGCC	4 cut(s)	98, 202, 237, 271
ApeKI	GCWGC	2 cut(s)	106, 276
ApoI	RAATTY	1 cut(s)	122
AsuHPI	GGTGA	2 cut(s)	28, 135
AxyI	CCTNAGG	1 cut(s)	305
BanII	GRGCYC	1 cut(s)	291
BbsI	GAAGAC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	291
BbvI	GCAGC	2 cut(s)	93, 263
BccI	CCATC	1 cut(s)	185
BceAI	ACGGC	2 cut(s)	169, 203
BciT130I	CCWGG	1 cut(s)	201
BclI	TGATCA	1 cut(s)	36
BfaI	CTAG	1 cut(s)	173
BisI	GCNGC	4 cut(s)	107, 115, 274, 277
BlsI	GCNGC	4 cut(s)	108, 116, 275, 278
Bme1390I	CCNGG	1 cut(s)	201
BmrFI	CCNGG	1 cut(s)	201
BpiI	GAAGAC	1 cut(s)	147
BpmI	CTGGAG	1 cut(s)	99
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	199
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse1I	ACTGG	1 cut(s)	69
Bse21I	CCTNAGG	1 cut(s)	305
BseBI	CCWGG	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	199
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseNI	ACTGG	1 cut(s)	69
BseXI	GCAGC	2 cut(s)	93, 263
BseYI	CCCAGC	1 cut(s)	252
BsgI	GTGCAG	1 cut(s)	92
Bsh1236I	CGCG	1 cut(s)	230
BshFI	GGCC	4 cut(s)	100, 204, 239, 273
BsiHKAI	GWGCWC	1 cut(s)	291
BslI	CCNNNNNNNGG	1 cut(s)	191
BsnI	GGCC	4 cut(s)	100, 204, 239, 273
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	2 cut(s)	36, 223
BspACI	CCGC	3 cut(s)	115, 216, 274
BspANI	GGCC	4 cut(s)	100, 204, 239, 273
BspCNI	CTCAG	1 cut(s)	318
BspFNI	CGCG	1 cut(s)	230
BsrBI	CCGCTC	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	69
BssECI	CCNNGG	1 cut(s)	199
BssMI	GATC	2 cut(s)	36, 223
BssNI	GRCGYC	1 cut(s)	90
Bst2UI	CCWGG	1 cut(s)	201
Bst6I	CTCTTC	1 cut(s)	145
BstACI	GRCGYC	1 cut(s)	90
BstC8I	GCNNGC	2 cut(s)	85, 301
BstDEI	CTNAG	1 cut(s)	305
BstFNI	CGCG	1 cut(s)	230
BstKTI	GATC	2 cut(s)	39, 226
BstMBI	GATC	2 cut(s)	36, 223
BstMWI	GCNNNNNNNGC	3 cut(s)	106, 236, 262
BstNI	CCWGG	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	199
BstUI	CGCG	1 cut(s)	230
BstV1I	GCAGC	2 cut(s)	93, 263
BstV2I	GAAGAC	1 cut(s)	147
Bsu36I	CCTNAGG	1 cut(s)	305
BsuRI	GGCC	4 cut(s)	100, 204, 239, 273
BtsI	GCAGTG	2 cut(s)	101, 109
BtsIMutI	CAGTG	2 cut(s)	101, 109
Cac8I	GCNNGC	2 cut(s)	85, 301
CseI	GACGC	1 cut(s)	219
CviJI	RGCY	9 cut(s)	100, 184, 204, 212, 239, 256, 273, 289, 299
CviKI_1	RGCY	9 cut(s)	100, 184, 204, 212, 239, 256, 273, 289, 299
DdeI	CTNAG	1 cut(s)	305
DpnI	GATC	2 cut(s)	38, 225
DpnII	GATC	2 cut(s)	36, 223
EaeI	YGGCCR	2 cut(s)	98, 271
Eam1104I	CTCTTC	1 cut(s)	145
EarI	CTCTTC	1 cut(s)	145
Ecl136II	GAGCTC	1 cut(s)	289
Eco147I	AGGCCT	1 cut(s)	204
Eco24I	GRGCYC	1 cut(s)	291
Eco53kI	GAGCTC	1 cut(s)	289
Eco81I	CCTNAGG	1 cut(s)	305
EcoICRI	GAGCTC	1 cut(s)	289
EcoRI	GAATTC	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	199
EcoT38I	GRGCYC	1 cut(s)	291
FaiI	YATR	3 cut(s)	270, 312, 314
FbaI	TGATCA	1 cut(s)	36
Fnu4HI	GCNGC	4 cut(s)	107, 115, 274, 277
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	4 cut(s)	107, 115, 274, 277
FspBI	CTAG	1 cut(s)	173
GluI	GCNGC	4 cut(s)	107, 115, 274, 277
GsaI	CCCAGC	1 cut(s)	256
GsuI	CTGGAG	1 cut(s)	99
HaeIII	GGCC	4 cut(s)	100, 204, 239, 273
HgaI	GACGC	1 cut(s)	219
Hin1I	GRCGYC	1 cut(s)	90
HinfI	GANTC	2 cut(s)	195, 259
HphI	GGTGA	2 cut(s)	28, 135
Hpy188I	TCNGA	3 cut(s)	121, 160, 190
Hpy188III	TCNNGA	1 cut(s)	78
Hpy99I	CGWCG	3 cut(s)	92, 95, 154
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	1 cut(s)	109
HpyF10VI	GCNNNNNNNGC	3 cut(s)	106, 236, 262
HpyF3I	CTNAG	1 cut(s)	305
HpySE526I	ACGT	1 cut(s)	90
Hsp92I	GRCGYC	1 cut(s)	90
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	2 cut(s)	36, 223
LmnI	GCTCC	3 cut(s)	80, 122, 286
LpnPI	CCDG	6 cut(s)	63, 82, 186, 213, 266, 292
Lsp1109I	GCAGC	2 cut(s)	93, 263
MaeI	CTAG	1 cut(s)	173
MaeII	ACGT	1 cut(s)	90
MalI	GATC	2 cut(s)	38, 225
MbiI	CCGCTC	1 cut(s)	117
MboI	GATC	2 cut(s)	36, 223
MboII	GAAGA	3 cut(s)	57, 132, 147
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	3 cut(s)	40, 61, 122
MlyI	GAGTC	2 cut(s)	189, 253
MmeI	TCCRAC	1 cut(s)	69
MnlI	CCTC	3 cut(s)	148, 250, 314
MspA1I	CMGCKG	2 cut(s)	256, 276
MspR9I	CCNGG	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	201
MvnI	CGCG	1 cut(s)	230
MwoI	GCNNNNNNNGC	3 cut(s)	106, 236, 262
NdeII	GATC	2 cut(s)	36, 223
NmeAIII	GCCGAG	1 cut(s)	241
PceI	AGGCCT	1 cut(s)	204
PkrI	GCNGC	4 cut(s)	108, 116, 275, 278
PleI	GAGTC	2 cut(s)	189, 253
PpsI	GAGTC	2 cut(s)	189, 253
Psp124BI	GAGCTC	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	199
PspFI	CCCAGC	1 cut(s)	252
PspGI	CCWGG	1 cut(s)	199
PvuII	CAGCTG	1 cut(s)	256
SacI	GAGCTC	1 cut(s)	291
SatI	GCNGC	4 cut(s)	107, 115, 274, 277
Sau3AI	GATC	2 cut(s)	36, 223
SchI	GAGTC	2 cut(s)	189, 253
ScrFI	CCNGG	1 cut(s)	201
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	6 cut(s)	93, 178, 258, 291, 301, 311
Sse9I	AATT	3 cut(s)	40, 61, 122
SseBI	AGGCCT	1 cut(s)	204
SsiI	CCGC	3 cut(s)	115, 216, 274
SspMI	CTAG	1 cut(s)	173
SstI	GAGCTC	1 cut(s)	291
StuI	AGGCCT	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	199
TaiI	ACGT	1 cut(s)	93
TasI	AATT	3 cut(s)	40, 61, 122
TauI	GCSGC	2 cut(s)	117, 276
TscAI	CASTG	2 cut(s)	108, 116
TseI	GCWGC	2 cut(s)	106, 276
TspRI	CASTG	2 cut(s)	108, 116
XapI	RAATTY	1 cut(s)	122
XspI	CTAG	1 cut(s)	173
ZraI	GACGTC	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.