Rroxscaffold_166G00440760

Protoheme IX farnesyltransferase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000166
Physical Location & Seq
Forward (+)
63617 .. 71975
8359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_166G00440760.1

Sequence Viewer

Length: 1188 bp
ATGAGTAGAGATGCAGACGATGATCATAATCAAGCATTACCGCAATTAGATCATTCGATCAGTCTGCAATTCCTTTCTCTTTATAAAACCGATCGTGAGATATGTTCGATCCTGACGAGTGACGATAATGTGTCGGTAATTGGGGTAATCAGTGCAATTTCTGCTACTGTTTGGGCCTCCAAATCTGTACAGATGGCTCGCTTCTTTGGTCGCTGTTATTGGGAGCTCTCGAAAGCGCGCCTCAGCATGCTAGTCGTTGCAACTAGTGGAACTGGATTTGTTCTCGGAAGTAGCAGTGGCTGCAGTACTGATTTTTCTAGACTTCTTTGGACATGCACCGCCACAATGATGGTTGCAGCTTCCGCTAATTCCTTAAACCAGGTATTCGAGAAGGATAACGATGCCAAAATGAAGAGGACGATGAAAAGACCCTTGCCTTCGGGACGCATTGGTAGGCCTCATGCGGTCGCCTGGGCATGTATTGCTGGTGTAGCTGACGTTACTTTGTTAGCAAGCAAGTCTAATATGTTGGCAGCTGGTCTTCCAGCTTCTACTCTGATACTCTACGCATTTGTGTACACTCCAATGAAGCAGATTCACCCGGTGAACACATGGATCGGCCCGATTGTTGGAGCGATCCCACCACTTCTAGGTTGGGCGGCAGCTTCTGGAGGCCGGGTTTCGCGTAAAGTAATGATTCTCCCAGTTGCTTTGTATTTTTGGCAAATACCTCATTTTATGACCCTCGCTTACTTGTGCCACAAGGATTACACTGCCGGAGGGTTTAGGATGTTGTCTTCTGGTCAAGGAACGGCCTCTGTGGCTTTGAGGAATTCTGCATACCTAATTCCGTTGGGATTCTTGGCATATGATTGGGGTGTCACTTCTGGATGGTTTTTTGTAGAGTCTACTTTTCTAACTCTAGCAATGAGCACGTCAGCATTTTCATTCTACCAAGATCCTTCTACAGGTAAAGCTAGGAGGTTGTTTTGCGCCAGCCTCGTTTATCTTCCTGTATTTATGTTAGGGATTCTGCTTCACCGTGTATCTGATAATAAACAATGCTTGGTTGAACGGAATTCGATGAGTATGATTGCTGATGATATTTCAATGTCGTGCTCACCAGTATCAAATACTTCTGTTGCCCCATTTCCTTCATGTGCTTTGAGTCCCTGTAGGTTGTTGTAA

Protein Analysis

395

Amino Acids

42.92

Weight (kDa)

9.03

Isoelectric Point (pI)

42.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UbiA PF01040 95 - 330 1.9e-44 UbiA prenyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 84
AccI GTMKAC 1 cut(s) 908
AccII CGCG 2 cut(s) 238, 685
AciI CCGC 5 cut(s) 41, 339, 363, 464, 659
AclWI GGATC 4 cut(s) 103, 623, 631, 953
AcsI RAATTY 2 cut(s) 832, 1078
AdeI CACNNNGTG 1 cut(s) 604
AfaI GTAC 3 cut(s) 189, 307, 578
AfiI CCNNNNNNNGG 3 cut(s) 629, 650, 968
AgsI TTSAA 2 cut(s) 1073, 1110
AhlI ACTAGT 1 cut(s) 263
AjiI CACGTC 1 cut(s) 936
AjnI CCWGG 2 cut(s) 378, 470
AluBI AGCT 7 cut(s) 226, 359, 494, 536, 548, 665, 977
AluI AGCT 7 cut(s) 226, 359, 494, 536, 548, 665, 977
Alw21I GWGCWC 3 cut(s) 228, 935, 1121
AlwI GGATC 4 cut(s) 103, 623, 631, 953
AlwNI CAGNNNCTG 2 cut(s) 300, 668
AoxI GGCC 5 cut(s) 174, 455, 619, 673, 813
ApeKI GCWGC 4 cut(s) 300, 356, 533, 662
ApoI RAATTY 2 cut(s) 832, 1078
AspLEI GCGC 3 cut(s) 238, 240, 995
AspS9I GGNCC 2 cut(s) 174, 620
AsuC2I CCSGG 2 cut(s) 602, 677
AsuHPI GGTGA 4 cut(s) 590, 616, 1031, 1113
BanII GRGCYC 1 cut(s) 228
BbsI GAAGAC 2 cut(s) 533, 789
Bbv12I GWGCWC 3 cut(s) 228, 935, 1121
BbvCI CCTCAGC 1 cut(s) 242
BbvI GCAGC 4 cut(s) 287, 368, 545, 674
BccI CCATC 3 cut(s) 187, 343, 885
BceAI ACGGC 1 cut(s) 828
BcgI CGANNNNNNTGC 4 cut(s) 46, 80, 235, 269
BciT130I CCWGG 2 cut(s) 380, 472
BclI TGATCA 1 cut(s) 22
BcnI CCSGG 2 cut(s) 602, 677
BcuI ACTAGT 1 cut(s) 263
BfaI CTAG 6 cut(s) 251, 264, 318, 650, 923, 978
BfmI CTRYAG 3 cut(s) 301, 966, 1174
BglI GCCNNNNNGGC 1 cut(s) 821
BisI GCNGC 5 cut(s) 301, 357, 534, 660, 663
BlsI GCNGC 5 cut(s) 302, 358, 535, 661, 664
BmcAI AGTACT 1 cut(s) 307
Bme1390I CCNGG 4 cut(s) 380, 472, 602, 677
BmgBI CACGTC 1 cut(s) 936
BmgT120I GGNCC 2 cut(s) 174, 620
BmrFI CCNGG 4 cut(s) 380, 472, 602, 677
BmrI ACTGGG 1 cut(s) 698
BmsI GCATC 1 cut(s) 391
BmuI ACTGGG 1 cut(s) 698
BpiI GAAGAC 2 cut(s) 533, 789
BpmI CTGGAG 1 cut(s) 690
Bpu10I CCTNAGC 1 cut(s) 242
BpuMI CCSGG 2 cut(s) 602, 677
BsaBI GATNNNNATC 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 471
BsaXI ACNNNNNCTCC 2 cut(s) 663, 693
Bsc4I CCNNNNNNNGG 3 cut(s) 629, 650, 968
Bse1I ACTGG 3 cut(s) 277, 704, 1124
Bse3DI GCAATG 1 cut(s) 933
Bse8I GATNNNNATC 1 cut(s) 27
BseBI CCWGG 2 cut(s) 380, 472
BseDI CCNNGG 1 cut(s) 471
BseGI GGATG 2 cut(s) 795, 896
BseJI GATNNNNATC 1 cut(s) 27
BseLI CCNNNNNNNGG 3 cut(s) 629, 650, 968
BseMI GCAATG 1 cut(s) 933
BseMII CTCAG 1 cut(s) 256
BseNI ACTGG 3 cut(s) 277, 704, 1124
BsePI GCGCGC 1 cut(s) 236
BseXI GCAGC 4 cut(s) 287, 368, 545, 674
Bsh1236I CGCG 2 cut(s) 238, 685
Bsh1285I CGRYCG 2 cut(s) 94, 468
BshFI GGCC 5 cut(s) 176, 457, 621, 675, 815
BsiEI CGRYCG 2 cut(s) 94, 468
BsiHKAI GWGCWC 3 cut(s) 228, 935, 1121
BsiSI CCGG 3 cut(s) 602, 676, 777
BslFI GGGAC 2 cut(s) 456, 1155
BslI CCNNNNNNNGG 3 cut(s) 629, 650, 968
BsmFI GGGAC 2 cut(s) 456, 1155
BsnI GGCC 5 cut(s) 176, 457, 621, 675, 815
Bsp1286I GDGCHC 3 cut(s) 228, 935, 1121
Bsp1407I TGTACA 2 cut(s) 187, 576
Bsp143I GATC 8 cut(s) 22, 49, 57, 91, 108, 615, 636, 958
BspACI CCGC 5 cut(s) 41, 339, 363, 464, 659
BspANI GGCC 5 cut(s) 176, 457, 621, 675, 815
BspCNI CTCAG 1 cut(s) 255
BspFNI CGCG 2 cut(s) 238, 685
BspMAI CTGCAG 1 cut(s) 305
BspPI GGATC 4 cut(s) 103, 623, 631, 953
BsrDI GCAATG 1 cut(s) 933
BsrGI TGTACA 2 cut(s) 187, 576
BsrI ACTGG 3 cut(s) 277, 704, 1124
BssECI CCNNGG 1 cut(s) 471
BssHII GCGCGC 1 cut(s) 236
BssMI GATC 8 cut(s) 22, 49, 57, 91, 108, 615, 636, 958
Bst2UI CCWGG 2 cut(s) 380, 472
Bst4CI ACNGT 2 cut(s) 169, 1043
Bst6I CTCTTC 1 cut(s) 407
BstAPI GCANNNNNTGC 3 cut(s) 161, 300, 482
BstAUI TGTACA 2 cut(s) 187, 576
BstC8I GCNNGC 5 cut(s) 199, 238, 248, 514, 997
BstDEI CTNAG 1 cut(s) 242
BstENI CCTNNNNNAGG 1 cut(s) 966
BstF5I GGATG 2 cut(s) 795, 896
BstFNI CGCG 2 cut(s) 238, 685
BstHHI GCGC 3 cut(s) 238, 240, 995
BstKTI GATC 8 cut(s) 25, 52, 60, 94, 111, 618, 639, 961
BstMBI GATC 8 cut(s) 22, 49, 57, 91, 108, 615, 636, 958
BstMCI CGRYCG 2 cut(s) 94, 468
BstMWI GCNNNNNNNGC 6 cut(s) 161, 300, 362, 482, 491, 821
BstNI CCWGG 2 cut(s) 380, 472
BstNSI RCATGY 3 cut(s) 250, 336, 480
BstSCI CCNGG 4 cut(s) 378, 470, 600, 675
BstSFI CTRYAG 3 cut(s) 301, 966, 1174
BstUI CGCG 2 cut(s) 238, 685
BstV1I GCAGC 4 cut(s) 287, 368, 545, 674
BstV2I GAAGAC 2 cut(s) 533, 789
BstX2I RGATCY 1 cut(s) 958
BstXI CCANNNNNNTGG 1 cut(s) 349
BstYI RGATCY 1 cut(s) 958
BsuRI GGCC 5 cut(s) 176, 457, 621, 675, 815
BtrI CACGTC 1 cut(s) 936
BtsCI GGATG 2 cut(s) 795, 896
BtsI GCAGTG 2 cut(s) 301, 771
BtsIMutI CAGTG 3 cut(s) 157, 301, 771
Cac8I GCNNGC 5 cut(s) 199, 238, 248, 514, 997
CaiI CAGNNNCTG 2 cut(s) 300, 668
CfoI GCGC 3 cut(s) 238, 240, 995
Cfr13I GGNCC 2 cut(s) 174, 620
CseI GACGC 1 cut(s) 453
CsiI ACCWGGT 1 cut(s) 378
Csp6I GTAC 3 cut(s) 188, 306, 577
CviAII CATG 6 cut(s) 247, 333, 461, 477, 612, 1158
CviQI GTAC 3 cut(s) 188, 306, 577
DdeI CTNAG 1 cut(s) 242
DpnI GATC 8 cut(s) 24, 51, 59, 93, 110, 617, 638, 960
DpnII GATC 8 cut(s) 22, 49, 57, 91, 108, 615, 636, 958
DraIII CACNNNGTG 1 cut(s) 604
Eam1104I CTCTTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 407
Ecl136II GAGCTC 1 cut(s) 226
Eco147I AGGCCT 1 cut(s) 457
Eco24I GRGCYC 1 cut(s) 228
Eco53kI GAGCTC 1 cut(s) 226
EcoICRI GAGCTC 1 cut(s) 226
EcoNI CCTNNNNNAGG 1 cut(s) 966
EcoRI GAATTC 2 cut(s) 832, 1078
EcoRII CCWGG 2 cut(s) 378, 470
EcoT38I GRGCYC 1 cut(s) 228
FaeI CATG 6 cut(s) 250, 336, 464, 480, 615, 1161
FaqI GGGAC 2 cut(s) 456, 1155
FatI CATG 6 cut(s) 246, 332, 460, 476, 611, 1157
FauNDI CATATG 1 cut(s) 868
FbaI TGATCA 1 cut(s) 22
FblI GTMKAC 1 cut(s) 908
Fnu4HI GCNGC 5 cut(s) 301, 357, 534, 660, 663
FokI GGATG 2 cut(s) 802, 903
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 5 cut(s) 301, 357, 534, 660, 663
FspBI CTAG 6 cut(s) 251, 264, 318, 650, 923, 978
GlaI GCGC 3 cut(s) 237, 239, 994
GluI GCNGC 5 cut(s) 301, 357, 534, 660, 663
GsuI CTGGAG 1 cut(s) 690
HaeIII GGCC 5 cut(s) 176, 457, 621, 675, 815
HapII CCGG 3 cut(s) 602, 676, 777
HgaI GACGC 1 cut(s) 453
HhaI GCGC 3 cut(s) 238, 240, 995
Hin1II CATG 6 cut(s) 250, 336, 464, 480, 615, 1161
Hin6I GCGC 3 cut(s) 236, 238, 993
HinP1I GCGC 3 cut(s) 236, 238, 993
HinfI GANTC 6 cut(s) 595, 697, 858, 905, 1030, 1168
HpaII CCGG 3 cut(s) 602, 676, 777
HphI GGTGA 4 cut(s) 590, 616, 1031, 1113
Hpy166II GTNNAC 4 cut(s) 577, 579, 607, 909
Hpy188I TCNGA 3 cut(s) 287, 558, 1051
Hpy188III TCNNGA 8 cut(s) 95, 112, 229, 318, 388, 441, 669, 888
Hpy8I GTNNAC 4 cut(s) 577, 579, 607, 909
HpyAV CCTTC 4 cut(s) 385, 447, 972, 1164
HpyCH4III ACNGT 2 cut(s) 169, 1043
HpyCH4IV ACGT 2 cut(s) 498, 935
HpyCH4V TGCA 8 cut(s) 14, 67, 155, 260, 303, 336, 356, 839
HpyF10VI GCNNNNNNNGC 6 cut(s) 161, 300, 362, 482, 491, 821
HpyF3I CTNAG 1 cut(s) 242
HpySE526I ACGT 2 cut(s) 498, 935
Hsp92II CATG 6 cut(s) 250, 336, 464, 480, 615, 1161
HspAI GCGC 3 cut(s) 236, 238, 993
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 8 cut(s) 22, 49, 57, 91, 108, 615, 636, 958
LmnI GCTCC 2 cut(s) 223, 632
Lsp1109I GCAGC 4 cut(s) 287, 368, 545, 674
LweI GCATC 1 cut(s) 391
MabI ACCWGGT 1 cut(s) 378
MaeI CTAG 6 cut(s) 251, 264, 318, 650, 923, 978
MaeII ACGT 2 cut(s) 498, 935
MaeIII GTNAC 3 cut(s) 119, 499, 880
MalI GATC 8 cut(s) 24, 51, 59, 93, 110, 617, 638, 960
MboI GATC 8 cut(s) 22, 49, 57, 91, 108, 615, 636, 958
MboII GAAGA 4 cut(s) 424, 533, 789, 1001
MflI RGATCY 1 cut(s) 958
MhlI GDGCHC 3 cut(s) 228, 935, 1121
MluCI AATT 8 cut(s) 44, 68, 138, 156, 367, 832, 846, 1078
MlyI GAGTC 2 cut(s) 914, 1177
MmeI TCCRAC 1 cut(s) 610
MseI TTAA 1 cut(s) 374
MslI CAYNNNNRTG 2 cut(s) 347, 584
MspA1I CMGCKG 1 cut(s) 536
MspI CCGG 3 cut(s) 602, 676, 777
MspR9I CCNGG 4 cut(s) 380, 472, 602, 677
MvaI CCWGG 2 cut(s) 380, 472
MvnI CGCG 2 cut(s) 238, 685
MwoI GCNNNNNNNGC 6 cut(s) 161, 300, 362, 482, 491, 821
NciI CCSGG 2 cut(s) 602, 677
NdeI CATATG 1 cut(s) 868
NdeII GATC 8 cut(s) 22, 49, 57, 91, 108, 615, 636, 958
NlaIII CATG 6 cut(s) 250, 336, 464, 480, 615, 1161
NmuCI GTSAC 2 cut(s) 119, 880
NspI RCATGY 3 cut(s) 250, 336, 480
PaeI GCATGC 1 cut(s) 250
PauI GCGCGC 1 cut(s) 236
PceI AGGCCT 1 cut(s) 457
PcsI WCGNNNNNNNCGW 1 cut(s) 113
PfeI GAWTC 4 cut(s) 595, 697, 858, 1030
PkrI GCNGC 5 cut(s) 302, 358, 535, 661, 664
Ple19I CGATCG 1 cut(s) 94
PleI GAGTC 2 cut(s) 913, 1176
PpsI GAGTC 2 cut(s) 913, 1176
PsiI TTATAA 1 cut(s) 84
Psp124BI GAGCTC 1 cut(s) 228
Psp6I CCWGG 2 cut(s) 378, 470
PspGI CCWGG 2 cut(s) 378, 470
PspPI GGNCC 2 cut(s) 174, 620
PstI CTGCAG 1 cut(s) 305
PstNI CAGNNNCTG 2 cut(s) 300, 668
PsuI RGATCY 1 cut(s) 958
PteI GCGCGC 1 cut(s) 236
PvuI CGATCG 1 cut(s) 94
PvuII CAGCTG 1 cut(s) 536
RsaI GTAC 3 cut(s) 189, 307, 578
RsaNI GTAC 3 cut(s) 188, 306, 577
RseI CAYNNNNRTG 2 cut(s) 347, 584
SacI GAGCTC 1 cut(s) 228
SaqAI TTAA 1 cut(s) 374
SatI GCNGC 5 cut(s) 301, 357, 534, 660, 663
Sau3AI GATC 8 cut(s) 22, 49, 57, 91, 108, 615, 636, 958
Sau96I GGNCC 2 cut(s) 174, 620
ScaI AGTACT 1 cut(s) 307
SchI GAGTC 2 cut(s) 914, 1177
ScrFI CCNGG 4 cut(s) 380, 472, 602, 677
SduI GDGCHC 3 cut(s) 228, 935, 1121
SexAI ACCWGGT 1 cut(s) 378
SfaNI GCATC 1 cut(s) 391
SfcI CTRYAG 3 cut(s) 301, 966, 1174
SmiMI CAYNNNNRTG 2 cut(s) 347, 584
SpeI ACTAGT 1 cut(s) 263
SphI GCATGC 1 cut(s) 250
Sse9I AATT 8 cut(s) 44, 68, 138, 156, 367, 832, 846, 1078
SseBI AGGCCT 1 cut(s) 457
SsiI CCGC 5 cut(s) 41, 339, 363, 464, 659
SspMI CTAG 6 cut(s) 251, 264, 318, 650, 923, 978
SstI GAGCTC 1 cut(s) 228
StuI AGGCCT 1 cut(s) 457
StyD4I CCNGG 4 cut(s) 378, 470, 600, 675
TaaI ACNGT 2 cut(s) 169, 1043
TaiI ACGT 2 cut(s) 501, 938
TaqI TCGA 5 cut(s) 56, 107, 230, 387, 1082
TasI AATT 8 cut(s) 44, 68, 138, 156, 367, 832, 846, 1078
TatI WGTACW 3 cut(s) 187, 305, 576
TauI GCSGC 1 cut(s) 662
TfiI GAWTC 4 cut(s) 595, 697, 858, 1030
Tru1I TTAA 1 cut(s) 374
Tru9I TTAA 1 cut(s) 374
TscAI CASTG 3 cut(s) 157, 301, 778
TseFI GTSAC 2 cut(s) 119, 880
TseI GCWGC 4 cut(s) 300, 356, 533, 662
Tsp45I GTSAC 2 cut(s) 119, 880
TspDTI ATGAA 5 cut(s) 425, 437, 602, 936, 1146
TspGWI ACGGA 2 cut(s) 840, 1090
TspRI CASTG 3 cut(s) 157, 301, 778
XagI CCTNNNNNAGG 1 cut(s) 966
XapI RAATTY 2 cut(s) 832, 1078
XbaI TCTAGA 1 cut(s) 317
XceI RCATGY 3 cut(s) 250, 336, 480
XcmI CCANNNNNNNNNTGG 1 cut(s) 651
XmiI GTMKAC 1 cut(s) 908
XspI CTAG 6 cut(s) 251, 264, 318, 650, 923, 978
ZrmI AGTACT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.