pycom08g20360

Protoheme IX farnesyltransferase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
20172791 .. 20178417
5627 bp
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UTR
Exon/CDS
Intron
pycom08g20360.4

Sequence Viewer

Length: 1434 bp
ATGTGTGGATATCACTCTAGTAGTATTGGGCCTAAAAGCAGGCAGTCGCTCGGGTCAGCTGCTCTGTCGATCTCTTCTACTTCGTCTTCCCTTTCTCTCTGCATTCACGAGACCACGATGTGGAGGAACTCGAAGAGTTTATCTTCCAAGTTCCCGATATCCAACAACCCACTCTACCACCTGTCTTCCGCCTCCCCCACCGCCGCACACGGCGGCGTTCGACCCGCGCTGCTCTCTCACTCCCTCACCCAATCCTACCCCTACTCCCCTTCGCCTTCGCCTTCAGATTCTCTCAAGCTCGGGCTTCACCGAGCCGATGGAGTCGGAGCCCTACCGGCGGCGGCTGATCTCGCGTCTTTGGCTTCCAGGGCTTCGCACTTGGCCCGCCACTATGGCCGCTGCTATTGGGAGCTCTCCAAAGCTCGCCTCAGCATGTTAGTCGTTGCAACTTCTGGAACTGGCTTTGTTCTTGGAAGTGGCCATGCCATTGATTTTGCTGGACTTTGTTGCACATGTGCTGGTACCATGATGGTTGCAGCATCTGCTAATTCCTTAAATCAGGTGTTTGAGAAGCAAAATGATGCCAAAATGAACAGAACGAAGAACAGACCACTACCTTCAGGACGCATTACGATCCCTCATGCAGTCACCTGGGCATCCGCTGCTGGTTTAGCTGGAACTGCTTTGTTGGCAAGCAAGGCTAATATGTTGGCAGCTGGTCTTGGAGCCTCCAATTTAATACTTTATGCGTTTGTGTACACTCCGTTGAAGCAGATTCACCCAGTGAATACGTGGGTTGGTGCTGTTGTTGGGGCTATCCCTCCACTTTTAGGTTGGGCTGCAGCTTCCGGGCAGGTTTCCCTCAATGCAATGCTACTCCCAGCTGCTCTGTACTTTTGGCAAATACCACATTTTATGGCCCTTGCATACTTGTGCCGTGATGACTATGCCGCTGGAGGGTTTAGGATGTTCTCCCTTGCTGATGCTTCTGGTCGGAGAACAGCCTCAGTGGCTTTAAGGAATTGCATATACATGATCCCGTTGGGGTTCTTGGCCTATGACTGGGGTATGACGTCGGGATGGTTTTGTCTTGAATCTACTCTTCTTACTCTCGCGATAGCTGCAACATCATTTTCGTTCTATCGAGACCGTACTAGACATAAAGCAAGGAAGATGTTTCATGCCAGCCTTCTTTATCTTCCTGTATTTATGTCTGGGATTCTGTTTCACCGTATCGTTGATAACCAACAATGCCTTACTGAGGAGAATTTCGAGAGTAGCGTTGAGCTTTCGTTGCCCTCACAAGACGGCAATGTCAATCGGAAGAATAGGTTGAGGAATTCCACAGATGGCACGCAAGTTCGCCCGCCTGTATCATATGCCTCAATTGCACCATTTCCGTTTCTCCCAGTTCCTTCGTATGCCGCTCCGTGA

Protein Analysis

478

Amino Acids

51.08

Weight (kDa)

9.56

Isoelectric Point (pI)

42.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1313
AatII GACGTC 1 cut(s) 1076
Acc36I ACCTGC 1 cut(s) 844
Acc65I GGTACC 1 cut(s) 521
AccB1I GGYRCC 1 cut(s) 521
AccB7I CCANNNNNTGG 1 cut(s) 120
AccBSI CCGCTC 1 cut(s) 1427
AccII CGCG 3 cut(s) 227, 353, 1115
AclWI GGATC 2 cut(s) 628, 1030
AcoI YGGCCR 2 cut(s) 394, 478
AcsI RAATTY 2 cut(s) 1267, 1339
AcuI CTGAAG 2 cut(s) 267, 603
AcyI GRCGYC 1 cut(s) 1073
AdeI CACNNNGTG 2 cut(s) 120, 784
AfaI GTAC 4 cut(s) 523, 758, 893, 1153
AfiI CCNNNNNNNGG 6 cut(s) 120, 337, 830, 957, 1062, 1261
AflIII ACRYGT 1 cut(s) 512
AgsI TTSAA 2 cut(s) 769, 1094
AjnI CCWGG 2 cut(s) 365, 650
Alw21I GWGCWC 1 cut(s) 414
Alw26I GTCTC 2 cut(s) 104, 1140
AlwI GGATC 2 cut(s) 628, 1030
AlwNI CAGNNNCTG 1 cut(s) 542
Ama87I CYCGRG 2 cut(s) 50, 299
AoxI GGCC 6 cut(s) 29, 381, 394, 478, 918, 1053
ApoI RAATTY 2 cut(s) 1267, 1339
Asp718I GGTACC 1 cut(s) 521
AspLEI GCGC 1 cut(s) 229
AspS9I GGNCC 3 cut(s) 29, 382, 919
AsuC2I CCSGG 1 cut(s) 850
AsuHPI GGTGA 5 cut(s) 238, 299, 640, 770, 1220
AvaI CYCGRG 2 cut(s) 50, 299
BalI TGGCCA 1 cut(s) 480
BanI GGYRCC 1 cut(s) 521
BanII GRGCYC 2 cut(s) 331, 414
BauI CACGAG 1 cut(s) 107
BbsI GAAGAC 2 cut(s) 78, 177
Bbv12I GWGCWC 1 cut(s) 414
BbvCI CCTCAGC 1 cut(s) 428
BccI CCATC 4 cut(s) 311, 523, 1074, 1343
BceAI ACGGC 3 cut(s) 226, 921, 1324
BcgI CGANNNNNNTGC 2 cut(s) 421, 455
BciT130I CCWGG 2 cut(s) 367, 652
BcnI CCSGG 1 cut(s) 850
BcoDI GTCTC 2 cut(s) 104, 1140
BfaI CTAG 2 cut(s) 18, 1155
BfmI CTRYAG 1 cut(s) 840
BfuAI ACCTGC 1 cut(s) 844
BglI GCCNNNNNGGC 3 cut(s) 335, 393, 1010
Bme1390I CCNGG 3 cut(s) 367, 652, 850
BmeT110I CYCGRG 2 cut(s) 50, 299
BmgT120I GGNCC 3 cut(s) 29, 382, 919
BmiI GGNNCC 3 cut(s) 328, 523, 727
BmrFI CCNGG 3 cut(s) 367, 652, 850
BmrI ACTGGG 3 cut(s) 776, 1072, 1403
BmsI GCATC 4 cut(s) 548, 571, 665, 973
BmuI ACTGGG 3 cut(s) 776, 1072, 1403
BpiI GAAGAC 2 cut(s) 78, 177
BpmI CTGGAG 1 cut(s) 975
Bpu10I CCTNAGC 1 cut(s) 428
BpuEI CTTGAG 1 cut(s) 278
BpuMI CCSGG 1 cut(s) 850
BsaAI YACGTR 1 cut(s) 792
BsaHI GRCGYC 1 cut(s) 1073
BsaI GGTCTC 2 cut(s) 104, 1140
BsaJI CCNNGG 2 cut(s) 366, 651
BsaXI ACNNNNNCTCC 2 cut(s) 248, 278
Bsc4I CCNNNNNNNGG 6 cut(s) 120, 337, 830, 957, 1062, 1261
Bse118I RCCGGY 1 cut(s) 334
Bse1I ACTGG 4 cut(s) 463, 782, 1067, 1409
Bse3DI GCAATG 2 cut(s) 876, 1318
BseBI CCWGG 2 cut(s) 367, 652
BseDI CCNNGG 2 cut(s) 366, 651
BseGI GGATG 3 cut(s) 656, 972, 1085
BseLI CCNNNNNNNGG 6 cut(s) 120, 337, 830, 957, 1062, 1261
BseMI GCAATG 2 cut(s) 876, 1318
BseMII CTCAG 3 cut(s) 442, 1020, 1251
BseNI ACTGG 4 cut(s) 463, 782, 1067, 1409
BseRI GAGGAG 1 cut(s) 1277
BseYI CCCAGC 1 cut(s) 880
Bsh1236I CGCG 3 cut(s) 227, 353, 1115
BshFI GGCC 6 cut(s) 31, 383, 396, 480, 920, 1055
BshNI GGYRCC 1 cut(s) 521
BsiHKAI GWGCWC 1 cut(s) 414
BsiHKCI CYCGRG 2 cut(s) 50, 299
BsiSI CCGG 2 cut(s) 335, 849
BslI CCNNNNNNNGG 6 cut(s) 120, 337, 830, 957, 1062, 1261
BsmAI GTCTC 2 cut(s) 104, 1140
BsmI GAATGC 1 cut(s) 102
BsnI GGCC 6 cut(s) 31, 383, 396, 480, 920, 1055
Bso31I GGTCTC 2 cut(s) 104, 1140
BsoBI CYCGRG 2 cut(s) 50, 299
Bsp1286I GDGCHC 2 cut(s) 331, 414
Bsp1407I TGTACA 1 cut(s) 756
Bsp143I GATC 4 cut(s) 69, 346, 633, 1035
Bsp68I TCGCGA 1 cut(s) 1115
BspANI GGCC 6 cut(s) 31, 383, 396, 480, 920, 1055
BspCNI CTCAG 3 cut(s) 441, 1019, 1252
BspFNI CGCG 3 cut(s) 227, 353, 1115
BspLI GGNNCC 3 cut(s) 328, 523, 727
BspMAI CTGCAG 1 cut(s) 844
BspMI ACCTGC 1 cut(s) 844
BspPI GGATC 2 cut(s) 628, 1030
BspT107I GGYRCC 1 cut(s) 521
BspTNI GGTCTC 2 cut(s) 104, 1140
BsrBI CCGCTC 1 cut(s) 1427
BsrDI GCAATG 2 cut(s) 876, 1318
BsrFI RCCGGY 1 cut(s) 334
BsrGI TGTACA 1 cut(s) 756
BsrI ACTGG 4 cut(s) 463, 782, 1067, 1409
BssAI RCCGGY 1 cut(s) 334
BssECI CCNNGG 2 cut(s) 366, 651
BssMI GATC 4 cut(s) 69, 346, 633, 1035
BssNI GRCGYC 1 cut(s) 1073
BssSI CACGAG 1 cut(s) 107
Bst2BI CACGAG 1 cut(s) 107
Bst2UI CCWGG 2 cut(s) 367, 652
Bst4CI ACNGT 2 cut(s) 1151, 1232
Bst6I CTCTTC 3 cut(s) 79, 128, 1107
BstACI GRCGYC 1 cut(s) 1073
BstAPI GCANNNNNTGC 2 cut(s) 542, 662
BstAUI TGTACA 1 cut(s) 756
BstBAI YACGTR 1 cut(s) 792
BstC8I GCNNGC 7 cut(s) 41, 385, 424, 694, 1186, 1355, 1367
BstDEI CTNAG 3 cut(s) 428, 1006, 1260
BstENI CCTNNNNNAGG 1 cut(s) 1259
BstF5I GGATG 3 cut(s) 656, 972, 1085
BstFNI CGCG 3 cut(s) 227, 353, 1115
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 4 cut(s) 72, 349, 636, 1038
BstMAI GTCTC 2 cut(s) 104, 1140
BstMBI GATC 4 cut(s) 69, 346, 633, 1035
BstNI CCWGG 2 cut(s) 367, 652
BstNSI RCATGY 2 cut(s) 436, 516
BstSCI CCNGG 3 cut(s) 365, 650, 848
BstSFI CTRYAG 1 cut(s) 840
BstUI CGCG 3 cut(s) 227, 353, 1115
BstV2I GAAGAC 2 cut(s) 78, 177
BsuRI GGCC 6 cut(s) 31, 383, 396, 480, 920, 1055
BtsCI GGATG 3 cut(s) 656, 972, 1085
BtsIMutI CAGTG 2 cut(s) 789, 1014
BtuMI TCGCGA 1 cut(s) 1115
BveI ACCTGC 1 cut(s) 844
Cac8I GCNNGC 7 cut(s) 41, 385, 424, 694, 1186, 1355, 1367
CaiI CAGNNNCTG 1 cut(s) 542
CfoI GCGC 1 cut(s) 229
Cfr10I RCCGGY 1 cut(s) 334
Cfr13I GGNCC 3 cut(s) 29, 382, 919
CseI GACGC 2 cut(s) 342, 633
Csp6I GTAC 4 cut(s) 522, 757, 892, 1152
CviAII CATG 7 cut(s) 433, 482, 513, 526, 641, 1033, 1181
CviQI GTAC 4 cut(s) 522, 757, 892, 1152
DdeI CTNAG 3 cut(s) 428, 1006, 1260
DpnI GATC 4 cut(s) 71, 348, 635, 1037
DpnII GATC 4 cut(s) 69, 346, 633, 1035
DraIII CACNNNGTG 2 cut(s) 120, 784
DrdI GACNNNNNNGTC 1 cut(s) 1313
DseDI GACNNNNNNGTC 1 cut(s) 1313
EaeI YGGCCR 2 cut(s) 394, 478
Eam1104I CTCTTC 3 cut(s) 79, 128, 1107
EarI CTCTTC 3 cut(s) 79, 128, 1107
EciI GGCGGA 1 cut(s) 178
Ecl136II GAGCTC 1 cut(s) 412
Eco24I GRGCYC 2 cut(s) 331, 414
Eco31I GGTCTC 2 cut(s) 104, 1140
Eco32I GATATC 2 cut(s) 11, 159
Eco53kI GAGCTC 1 cut(s) 412
Eco57I CTGAAG 2 cut(s) 267, 603
Eco88I CYCGRG 2 cut(s) 50, 299
EcoICRI GAGCTC 1 cut(s) 412
EcoNI CCTNNNNNAGG 1 cut(s) 1259
EcoRI GAATTC 1 cut(s) 1339
EcoRII CCWGG 2 cut(s) 365, 650
EcoRV GATATC 2 cut(s) 11, 159
EcoT38I GRGCYC 2 cut(s) 331, 414
FaeI CATG 7 cut(s) 436, 485, 516, 529, 644, 1036, 1184
FatI CATG 7 cut(s) 432, 481, 512, 525, 640, 1032, 1180
FauI CCCGC 3 cut(s) 232, 392, 1374
FauNDI CATATG 1 cut(s) 1378
FokI GGATG 3 cut(s) 643, 979, 1092
FriOI GRGCYC 2 cut(s) 331, 414
FspBI CTAG 2 cut(s) 18, 1155
GlaI GCGC 1 cut(s) 228
GsaI CCCAGC 1 cut(s) 884
GsuI CTGGAG 1 cut(s) 975
HaeIII GGCC 6 cut(s) 31, 383, 396, 480, 920, 1055
HapII CCGG 2 cut(s) 335, 849
HgaI GACGC 2 cut(s) 342, 633
HhaI GCGC 1 cut(s) 229
Hin1I GRCGYC 1 cut(s) 1073
Hin1II CATG 7 cut(s) 436, 485, 516, 529, 644, 1036, 1184
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HinfI GANTC 5 cut(s) 287, 321, 775, 1094, 1219
HpaII CCGG 2 cut(s) 335, 849
HphI GGTGA 5 cut(s) 238, 299, 640, 770, 1220
Hpy166II GTNNAC 2 cut(s) 757, 759
Hpy188I TCNGA 4 cut(s) 286, 326, 996, 1323
Hpy188III TCNNGA 9 cut(s) 107, 154, 453, 621, 1077, 1091, 1114, 1145, 1273
Hpy8I GTNNAC 2 cut(s) 757, 759
Hpy99I CGWCG 1 cut(s) 1078
HpyAV CCTTC 6 cut(s) 279, 285, 291, 627, 1199, 1425
HpyCH4III ACNGT 2 cut(s) 1151, 1232
HpyCH4IV ACGT 2 cut(s) 791, 1073
HpyF3I CTNAG 3 cut(s) 428, 1006, 1260
HpySE526I ACGT 2 cut(s) 791, 1073
Hsp92I GRCGYC 1 cut(s) 1073
Hsp92II CATG 7 cut(s) 436, 485, 516, 529, 644, 1036, 1184
HspAI GCGC 1 cut(s) 227
KpnI GGTACC 1 cut(s) 525
Kzo9I GATC 4 cut(s) 69, 346, 633, 1035
LmnI GCTCC 4 cut(s) 326, 409, 725, 1432
LweI GCATC 4 cut(s) 548, 571, 665, 973
MaeI CTAG 2 cut(s) 18, 1155
MaeII ACGT 2 cut(s) 791, 1073
MaeIII GTNAC 1 cut(s) 646
MalI GATC 4 cut(s) 71, 348, 635, 1037
MbiI CCGCTC 1 cut(s) 1427
MboI GATC 4 cut(s) 69, 346, 633, 1035
MfeI CAATTG 1 cut(s) 1386
MhlI GDGCHC 2 cut(s) 331, 414
MlsI TGGCCA 1 cut(s) 480
MluCI AATT 6 cut(s) 547, 733, 1021, 1267, 1339, 1386
MluNI TGGCCA 1 cut(s) 480
MlyI GAGTC 1 cut(s) 330
MmeI TCCRAC 3 cut(s) 186, 304, 974
Mox20I TGGCCA 1 cut(s) 480
MscI TGGCCA 1 cut(s) 480
MseI TTAA 3 cut(s) 554, 737, 1016
MslI CAYNNNNRTG 2 cut(s) 931, 1031
Msp20I TGGCCA 1 cut(s) 480
MspA1I CMGCKG 6 cut(s) 59, 399, 662, 716, 884, 953
MspI CCGG 2 cut(s) 335, 849
MspR9I CCNGG 3 cut(s) 367, 652, 850
MunI CAATTG 1 cut(s) 1386
Mva1269I GAATGC 1 cut(s) 102
MvaI CCWGG 2 cut(s) 367, 652
MvnI CGCG 3 cut(s) 227, 353, 1115
NciI CCSGG 1 cut(s) 850
NdeI CATATG 1 cut(s) 1378
NdeII GATC 4 cut(s) 69, 346, 633, 1035
NlaIII CATG 7 cut(s) 436, 485, 516, 529, 644, 1036, 1184
NlaIV GGNNCC 3 cut(s) 328, 523, 727
NmuCI GTSAC 1 cut(s) 646
NruI TCGCGA 1 cut(s) 1115
NspI RCATGY 2 cut(s) 436, 516
PciI ACATGT 1 cut(s) 512
PcsI WCGNNNNNNNCGW 1 cut(s) 1278
PctI GAATGC 1 cut(s) 102
PfeI GAWTC 4 cut(s) 287, 775, 1094, 1219
PflMI CCANNNNNTGG 1 cut(s) 120
PleI GAGTC 1 cut(s) 329
PpsI GAGTC 1 cut(s) 329
Ppu21I YACGTR 1 cut(s) 792
PscI ACATGT 1 cut(s) 512
Psp124BI GAGCTC 1 cut(s) 414
Psp6I CCWGG 2 cut(s) 365, 650
PspFI CCCAGC 1 cut(s) 880
PspGI CCWGG 2 cut(s) 365, 650
PspN4I GGNNCC 3 cut(s) 328, 523, 727
PspPI GGNCC 3 cut(s) 29, 382, 919
PstI CTGCAG 1 cut(s) 844
PstNI CAGNNNCTG 1 cut(s) 542
PvuII CAGCTG 3 cut(s) 59, 716, 884
RruI TCGCGA 1 cut(s) 1115
RsaI GTAC 4 cut(s) 523, 758, 893, 1153
RsaNI GTAC 4 cut(s) 522, 757, 892, 1152
RseI CAYNNNNRTG 2 cut(s) 931, 1031
SacI GAGCTC 1 cut(s) 414
SaqAI TTAA 3 cut(s) 554, 737, 1016
Sau3AI GATC 4 cut(s) 69, 346, 633, 1035
Sau96I GGNCC 3 cut(s) 29, 382, 919
SchI GAGTC 1 cut(s) 330
ScrFI CCNGG 3 cut(s) 367, 652, 850
SduI GDGCHC 2 cut(s) 331, 414
SfaNI GCATC 4 cut(s) 548, 571, 665, 973
SfcI CTRYAG 1 cut(s) 840
SmiMI CAYNNNNRTG 2 cut(s) 931, 1031
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 6 cut(s) 547, 733, 1021, 1267, 1339, 1386
SspMI CTAG 2 cut(s) 18, 1155
SstI GAGCTC 1 cut(s) 414
StyD4I CCNGG 3 cut(s) 365, 650, 848
TaaI ACNGT 2 cut(s) 1151, 1232
TaiI ACGT 2 cut(s) 794, 1076
TaqI TCGA 5 cut(s) 68, 131, 220, 1144, 1272
TasI AATT 6 cut(s) 547, 733, 1021, 1267, 1339, 1386
TatI WGTACW 2 cut(s) 756, 891
TauI GCSGC 7 cut(s) 206, 216, 341, 344, 399, 953, 1427
TfiI GAWTC 4 cut(s) 287, 775, 1094, 1219
Tru1I TTAA 3 cut(s) 554, 737, 1016
Tru9I TTAA 3 cut(s) 554, 737, 1016
TscAI CASTG 2 cut(s) 789, 1014
TseFI GTSAC 1 cut(s) 646
Tsp45I GTSAC 1 cut(s) 646
TspDTI ATGAA 2 cut(s) 605, 1169
TspGWI ACGGA 3 cut(s) 753, 1389, 1419
TspRI CASTG 2 cut(s) 789, 1014
Van91I CCANNNNNTGG 1 cut(s) 120
XagI CCTNNNNNAGG 1 cut(s) 1259
XapI RAATTY 2 cut(s) 1267, 1339
XceI RCATGY 2 cut(s) 436, 516
XcmI CCANNNNNNNNNTGG 2 cut(s) 789, 831
XspI CTAG 2 cut(s) 18, 1155
ZraI GACGTC 1 cut(s) 1074
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.