Rorug06G0075700

Protoheme IX farnesyltransferase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
10051968 .. 10055000
3033 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0075700.1

Sequence Viewer

Length: 1353 bp
ATGGGAACTCGAACTCAGAACGGCGCCGATAAAACTTACGACCAGACAGAGATGGACGAAAAATTAGCCAAGGAAAAGGCAATCAATGAGTGGCTTCCAATTACTTCTAAGAGAAATGCAAAATGGTGGTATTCGGCTTTTCACAATGTTACAGCCATGGTTGGAGCTGGTGTTCTCGGTCTCCCTTATGCCATGGCTGAGCTTGGATGGGGTCCTGGTATAGCTATTTTGGTCCTTTCATGGGTCATCACATTATACACACTATGGCAAATGGTTGAGATGCATGAGATGGTTCCAGGGAAACGTTTTGATCGTTACCACGAATTGGGTCAGCATGCATTTGGTGAAAAGCTTGGTCTTTACATTGTGGTTCCTCAGCAACTCATTGTTGAAGTTGGTGTTTGCATTGTGTACATGGTCACCGGAGGAAAATCGCTGCAGAAGGTCCATGACACTGCGTGCTCAGACTGCAAAAAGATCAAATTGACTTACTTCATTATGATCTTTGCCTCTGTTCATTTTGTGCTTTCCCTCCTTCCCAACTTCCACTCCATCGCCGGCGTGTCTTTGGCCGCAGCTGTCATGTCCTTGAGTTACTCTACCATAGCATGGACTACTGCTCTAGACAAGGGTGTGGTAGAAAATGTCGATTATAGTTACAAAGCCACGACTACTACAGGAAAAATTTTCAACTTCTTAGCTGCATTGGGTGAAGTGGCTTTTGCGTATGCTGGCCATAATGTAGTCCTCGAAATCCAAGCAACAATTCCTTCTACACCTGAGAAGCCTTCCAAGGTACCCATGTGGAGAGGAGTCATTTTTGCCTATATAATTGTGGCCTTGTGCTACTTCCCAGTTTCTCTGGTGGGATATTACATATATGGCAATTCACTTGATGACGACATCCTCATCACATTGGAAAGACCCAAATGGCTAATTGCAATGGCTAATATGTTTGTTGTCATCCATGTTATTGGAAGCTATCAGGTTTATGCAATGCCAGTGTTTGACATGATGGAAACTCTACTGGTAAAGAAGTGGGATTTCAGGCCAACTTTTAAGCTTCGCTTCATTACACGAACTTCATATGTTGCAATTACCATGTTTGTCGGAATCACATTCCCTTTCTTCAGTGGTCTCCTTGGATTTTTTGGAGGATTTGCTTTTGCCCCAACAACATATTTTCTTCCTTGCATAATGTGGCTTGCCATCTACAAACCAAAGAGATTCGGCTTATCCTGGTGGTGCAACTATATCTGCATCTTCTTTGGTGTTCTTTTGATGGTTCTATCACCAATTGGAGGGCTGAGATCAATCATAGTTCAAGCCAAGACCTACGAATTCTACTCTTAA

Protein Analysis

450

Amino Acids

50.72

Weight (kDa)

8.73

Isoelectric Point (pI)

26.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 39 - 434 3.6e-110 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 44 - 173 5.3e-10 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 796
AccB1I GGYRCC 2 cut(s) 23, 796
AccB7I CCANNNNNTGG 2 cut(s) 325, 609
AciI CCGC 1 cut(s) 573
AclI AACGTT 1 cut(s) 304
AcoI YGGCCR 2 cut(s) 570, 733
AcsI RAATTY 2 cut(s) 684, 1340
AcuI CTGAAG 1 cut(s) 1114
AcyI GRCGYC 1 cut(s) 24
AdeI CACNNNGTG 1 cut(s) 459
AfaI GTAC 2 cut(s) 413, 798
AfiI CCNNNNNNNGG 4 cut(s) 241, 325, 609, 1301
AgsI TTSAA 3 cut(s) 392, 691, 1325
AjnI CCWGG 3 cut(s) 214, 295, 1238
AjuI GAANNNNNNNTTGG 2 cut(s) 750, 782
AloI GAACNNNNNNTCC 2 cut(s) 156, 188
AluBI AGCT 8 cut(s) 167, 202, 224, 352, 578, 701, 981, 1063
AluI AGCT 8 cut(s) 167, 202, 224, 352, 578, 701, 981, 1063
Alw21I GWGCWC 1 cut(s) 464
Alw26I GTCTC 2 cut(s) 185, 1142
AoxI GGCC 4 cut(s) 570, 733, 837, 1049
ApeKI GCWGC 3 cut(s) 436, 575, 701
ApoI RAATTY 2 cut(s) 684, 1340
Asp718I GGTACC 1 cut(s) 796
AspLEI GCGC 1 cut(s) 26
AspS9I GGNCC 3 cut(s) 212, 232, 445
AsuHPI GGTGA 4 cut(s) 356, 412, 722, 1284
AvaII GGWCC 3 cut(s) 212, 232, 445
BaeI ACNNNNGTAYC 2 cut(s) 788, 821
BalI TGGCCA 1 cut(s) 735
BanI GGYRCC 2 cut(s) 23, 796
Bbv12I GWGCWC 1 cut(s) 464
BbvCI CCTCAGC 1 cut(s) 375
BbvI GCAGC 3 cut(s) 423, 587, 688
BccI CCATC 7 cut(s) 46, 201, 283, 560, 1009, 1217, 1276
BceAI ACGGC 1 cut(s) 37
BciT130I CCWGG 3 cut(s) 216, 297, 1240
BcoDI GTCTC 2 cut(s) 185, 1142
BfaI CTAG 1 cut(s) 623
BfmI CTRYAG 2 cut(s) 437, 675
BfoI RGCGCY 1 cut(s) 27
BisI GCNGC 4 cut(s) 437, 573, 576, 702
BlpI GCTNAGC 1 cut(s) 198
BlsI GCNGC 4 cut(s) 438, 574, 577, 703
Bme1390I CCNGG 3 cut(s) 216, 297, 1240
Bme18I GGWCC 3 cut(s) 212, 232, 445
BmgT120I GGNCC 3 cut(s) 212, 232, 445
BmiI GGNNCC 5 cut(s) 25, 213, 294, 372, 798
BmrFI CCNGG 3 cut(s) 216, 297, 1240
BmrI ACTGGG 1 cut(s) 848
BmsI GCATC 2 cut(s) 270, 1269
BmuI ACTGGG 1 cut(s) 848
Bpu10I CCTNAGC 1 cut(s) 375
Bpu1102I GCTNAGC 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 610
BsaHI GRCGYC 1 cut(s) 24
BsaI GGTCTC 2 cut(s) 185, 1142
BsaJI CCNNGG 6 cut(s) 69, 156, 192, 296, 792, 1141
BsaWI WCCGGW 1 cut(s) 422
BsaXI ACNNNNNCTCC 4 cut(s) 156, 186, 533, 563
Bsc4I CCNNNNNNNGG 4 cut(s) 241, 325, 609, 1301
Bse118I RCCGGY 1 cut(s) 557
Bse1I ACTGG 3 cut(s) 854, 1001, 1032
Bse3DI GCAATG 2 cut(s) 948, 1002
BseBI CCWGG 3 cut(s) 216, 297, 1240
BseDI CCNNGG 6 cut(s) 69, 156, 192, 296, 792, 1141
BseGI GGATG 3 cut(s) 212, 903, 963
BseLI CCNNNNNNNGG 4 cut(s) 241, 325, 609, 1301
BseMI GCAATG 2 cut(s) 948, 1002
BseMII CTCAG 6 cut(s) 29, 189, 389, 477, 771, 1298
BseNI ACTGG 3 cut(s) 854, 1001, 1032
BseRI GAGGAG 1 cut(s) 825
BseXI GCAGC 3 cut(s) 423, 587, 688
BshFI GGCC 4 cut(s) 572, 735, 839, 1051
BshNI GGYRCC 2 cut(s) 23, 796
BsiHKAI GWGCWC 1 cut(s) 464
BsiSI CCGG 2 cut(s) 423, 558
BslI CCNNNNNNNGG 4 cut(s) 241, 325, 609, 1301
BsmAI GTCTC 2 cut(s) 185, 1142
BsnI GGCC 4 cut(s) 572, 735, 839, 1051
Bso31I GGTCTC 2 cut(s) 185, 1142
Bsp1286I GDGCHC 1 cut(s) 464
Bsp1407I TGTACA 1 cut(s) 411
Bsp143I GATC 4 cut(s) 310, 477, 501, 1310
Bsp1720I GCTNAGC 1 cut(s) 198
Bsp19I CCATGG 2 cut(s) 156, 192
BspACI CCGC 1 cut(s) 573
BspANI GGCC 4 cut(s) 572, 735, 839, 1051
BspCNI CTCAG 6 cut(s) 28, 190, 388, 476, 772, 1299
BspLI GGNNCC 5 cut(s) 25, 213, 294, 372, 798
BspMAI CTGCAG 1 cut(s) 441
BspT107I GGYRCC 2 cut(s) 23, 796
BspTNI GGTCTC 2 cut(s) 185, 1142
BsrDI GCAATG 2 cut(s) 948, 1002
BsrFI RCCGGY 1 cut(s) 557
BsrGI TGTACA 1 cut(s) 411
BsrI ACTGG 3 cut(s) 854, 1001, 1032
BssAI RCCGGY 1 cut(s) 557
BssECI CCNNGG 6 cut(s) 69, 156, 192, 296, 792, 1141
BssMI GATC 4 cut(s) 310, 477, 501, 1310
BssNI GRCGYC 1 cut(s) 24
BssT1I CCWWGG 5 cut(s) 69, 156, 192, 792, 1141
Bst2UI CCWGG 3 cut(s) 216, 297, 1240
BstACI GRCGYC 1 cut(s) 24
BstAUI TGTACA 1 cut(s) 411
BstC8I GCNNGC 5 cut(s) 336, 460, 559, 733, 1206
BstDEI CTNAG 8 cut(s) 15, 108, 198, 375, 463, 697, 780, 1307
BstDSI CCRYGG 2 cut(s) 156, 192
BstEII GGTNACC 1 cut(s) 418
BstF5I GGATG 3 cut(s) 212, 903, 963
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 4 cut(s) 313, 480, 504, 1313
BstMAI GTCTC 2 cut(s) 185, 1142
BstMBI GATC 4 cut(s) 310, 477, 501, 1310
BstMWI GCNNNNNNNGC 1 cut(s) 468
BstNI CCWGG 3 cut(s) 216, 297, 1240
BstNSI RCATGY 1 cut(s) 338
BstPI GGTNACC 1 cut(s) 418
BstSCI CCNGG 3 cut(s) 214, 295, 1238
BstSFI CTRYAG 2 cut(s) 437, 675
BstV1I GCAGC 3 cut(s) 423, 587, 688
BstXI CCANNNNNNTGG 1 cut(s) 974
BsuRI GGCC 4 cut(s) 572, 735, 839, 1051
BtgI CCRYGG 2 cut(s) 156, 192
BtgZI GCGATG 1 cut(s) 538
BtsCI GGATG 3 cut(s) 212, 903, 963
BtsI GCAGTG 1 cut(s) 453
BtsIMutI CAGTG 3 cut(s) 453, 1008, 1138
Cac8I GCNNGC 5 cut(s) 336, 460, 559, 733, 1206
CfoI GCGC 1 cut(s) 26
Cfr10I RCCGGY 1 cut(s) 557
Cfr13I GGNCC 3 cut(s) 212, 232, 445
Csp6I GTAC 2 cut(s) 412, 797
CviQI GTAC 2 cut(s) 412, 797
DdeI CTNAG 8 cut(s) 15, 108, 198, 375, 463, 697, 780, 1307
DinI GGCGCC 1 cut(s) 25
DpnI GATC 4 cut(s) 312, 479, 503, 1312
DpnII GATC 4 cut(s) 310, 477, 501, 1310
DraIII CACNNNGTG 1 cut(s) 459
EaeI YGGCCR 2 cut(s) 570, 733
Eco130I CCWWGG 5 cut(s) 69, 156, 192, 792, 1141
Eco31I GGTCTC 2 cut(s) 185, 1142
Eco47I GGWCC 3 cut(s) 212, 232, 445
Eco57I CTGAAG 1 cut(s) 1114
Eco91I GGTNACC 1 cut(s) 418
EcoO109I RGGNCCY 1 cut(s) 212
EcoO65I GGTNACC 1 cut(s) 418
EcoRI GAATTC 1 cut(s) 1340
EcoRII CCWGG 3 cut(s) 214, 295, 1238
EcoT14I CCWWGG 5 cut(s) 69, 156, 192, 792, 1141
EcoT22I ATGCAT 2 cut(s) 285, 340
EgeI GGCGCC 1 cut(s) 25
EheI GGCGCC 1 cut(s) 25
ErhI CCWWGG 5 cut(s) 69, 156, 192, 792, 1141
FalI AAGNNNNNCTT 2 cut(s) 1052, 1084
FauNDI CATATG 1 cut(s) 1087
Fnu4HI GCNGC 4 cut(s) 437, 573, 576, 702
FokI GGATG 3 cut(s) 219, 890, 950
Fsp4HI GCNGC 4 cut(s) 437, 573, 576, 702
FspBI CTAG 1 cut(s) 623
GlaI GCGC 1 cut(s) 25
GluI GCNGC 4 cut(s) 437, 573, 576, 702
HaeII RGCGCY 1 cut(s) 27
HaeIII GGCC 4 cut(s) 572, 735, 839, 1051
HapII CCGG 2 cut(s) 423, 558
HhaI GCGC 1 cut(s) 26
Hin1I GRCGYC 1 cut(s) 24
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HindIII AAGCTT 2 cut(s) 350, 1061
HinfI GANTC 3 cut(s) 813, 1113, 1227
HpaII CCGG 2 cut(s) 423, 558
HphI GGTGA 4 cut(s) 356, 412, 722, 1284
Hpy166II GTNNAC 1 cut(s) 412
Hpy188I TCNGA 3 cut(s) 18, 466, 1112
Hpy188III TCNNGA 1 cut(s) 623
Hpy8I GTNNAC 1 cut(s) 412
HpyAV CCTTC 4 cut(s) 436, 545, 780, 798
HpyCH4IV ACGT 1 cut(s) 304
HpyF10VI GCNNNNNNNGC 1 cut(s) 468
HpyF3I CTNAG 8 cut(s) 15, 108, 198, 375, 463, 697, 780, 1307
HpySE526I ACGT 1 cut(s) 304
Hsp92I GRCGYC 1 cut(s) 24
HspAI GCGC 1 cut(s) 24
KasI GGCGCC 1 cut(s) 23
KpnI GGTACC 1 cut(s) 800
KroI GCCGGC 1 cut(s) 557
KroNI GCCGGC 1 cut(s) 559
Kzo9I GATC 4 cut(s) 310, 477, 501, 1310
LmnI GCTCC 1 cut(s) 164
Lsp1109I GCAGC 3 cut(s) 423, 587, 688
LweI GCATC 2 cut(s) 270, 1269
MaeI CTAG 1 cut(s) 623
MaeII ACGT 1 cut(s) 304
MaeIII GTNAC 5 cut(s) 148, 314, 418, 593, 656
MalI GATC 4 cut(s) 312, 479, 503, 1312
MboI GATC 4 cut(s) 310, 477, 501, 1310
MboII GAAGA 3 cut(s) 1120, 1178, 1255
MfeI CAATTG 1 cut(s) 1296
MhlI GDGCHC 1 cut(s) 464
MlsI TGGCCA 1 cut(s) 735
MluNI TGGCCA 1 cut(s) 735
Mly113I GGCGCC 1 cut(s) 24
MlyI GAGTC 1 cut(s) 822
MmeI TCCRAC 2 cut(s) 142, 1090
MnlI CCTC 9 cut(s) 384, 419, 520, 542, 758, 803, 917, 1148, 1295
Mox20I TGGCCA 1 cut(s) 735
Mph1103I ATGCAT 2 cut(s) 285, 340
MreI CGCCGGCG 1 cut(s) 557
MroNI GCCGGC 1 cut(s) 557
MscI TGGCCA 1 cut(s) 735
MseI TTAA 2 cut(s) 1059, 1351
Msp20I TGGCCA 1 cut(s) 735
MspA1I CMGCKG 1 cut(s) 578
MspI CCGG 2 cut(s) 423, 558
MspR9I CCNGG 3 cut(s) 216, 297, 1240
MunI CAATTG 1 cut(s) 1296
MvaI CCWGG 3 cut(s) 216, 297, 1240
MwoI GCNNNNNNNGC 1 cut(s) 468
NaeI GCCGGC 1 cut(s) 559
NarI GGCGCC 1 cut(s) 24
NcoI CCATGG 2 cut(s) 156, 192
NdeI CATATG 1 cut(s) 1087
NdeII GATC 4 cut(s) 310, 477, 501, 1310
NgoMIV GCCGGC 1 cut(s) 557
NlaIV GGNNCC 5 cut(s) 25, 213, 294, 372, 798
NmuCI GTSAC 1 cut(s) 418
NsiI ATGCAT 2 cut(s) 285, 340
NspI RCATGY 1 cut(s) 338
PaeI GCATGC 1 cut(s) 338
PcsI WCGNNNNNNNCGW 1 cut(s) 310
PdiI GCCGGC 1 cut(s) 559
PfeI GAWTC 2 cut(s) 1113, 1227
PflMI CCANNNNNTGG 2 cut(s) 325, 609
PkrI GCNGC 4 cut(s) 438, 574, 577, 703
PleI GAGTC 1 cut(s) 821
PluTI GGCGCC 1 cut(s) 27
PpsI GAGTC 1 cut(s) 821
PpuMI RGGWCCY 1 cut(s) 212
Psp1406I AACGTT 1 cut(s) 304
Psp5II RGGWCCY 1 cut(s) 212
Psp6I CCWGG 3 cut(s) 214, 295, 1238
PspEI GGTNACC 1 cut(s) 418
PspGI CCWGG 3 cut(s) 214, 295, 1238
PspN4I GGNNCC 5 cut(s) 25, 213, 294, 372, 798
PspPI GGNCC 3 cut(s) 212, 232, 445
PspPPI RGGWCCY 1 cut(s) 212
PstI CTGCAG 1 cut(s) 441
PvuII CAGCTG 1 cut(s) 578
RsaI GTAC 2 cut(s) 413, 798
RsaNI GTAC 2 cut(s) 412, 797
SaqAI TTAA 2 cut(s) 1059, 1351
SatI GCNGC 4 cut(s) 437, 573, 576, 702
Sau3AI GATC 4 cut(s) 310, 477, 501, 1310
Sau96I GGNCC 3 cut(s) 212, 232, 445
SchI GAGTC 1 cut(s) 822
ScrFI CCNGG 3 cut(s) 216, 297, 1240
SduI GDGCHC 1 cut(s) 464
SfaNI GCATC 2 cut(s) 270, 1269
SfcI CTRYAG 2 cut(s) 437, 675
SfoI GGCGCC 1 cut(s) 25
SgrAI CRCCGGYG 1 cut(s) 557
SinI GGWCC 3 cut(s) 212, 232, 445
SmlI CTYRAG 1 cut(s) 589
SmoI CTYRAG 1 cut(s) 589
SphI GCATGC 1 cut(s) 338
SsiI CCGC 1 cut(s) 573
SspDI GGCGCC 1 cut(s) 23
SspMI CTAG 1 cut(s) 623
StyD4I CCNGG 3 cut(s) 214, 295, 1238
StyI CCWWGG 5 cut(s) 69, 156, 192, 792, 1141
TaiI ACGT 1 cut(s) 307
TaqI TCGA 3 cut(s) 10, 648, 750
TaqII GACCGA 1 cut(s) 167
TatI WGTACW 1 cut(s) 411
TauI GCSGC 1 cut(s) 575
TfiI GAWTC 2 cut(s) 1113, 1227
Tru1I TTAA 2 cut(s) 1059, 1351
Tru9I TTAA 2 cut(s) 1059, 1351
TscAI CASTG 3 cut(s) 460, 1008, 1138
TseFI GTSAC 1 cut(s) 418
TseI GCWGC 3 cut(s) 436, 575, 701
Tsp45I GTSAC 1 cut(s) 418
TspDTI ATGAA 5 cut(s) 228, 484, 506, 1060, 1074
TspRI CASTG 3 cut(s) 460, 1008, 1138
Van91I CCANNNNNTGG 2 cut(s) 325, 609
VpaK11BI GGWCC 3 cut(s) 212, 232, 445
XapI RAATTY 2 cut(s) 684, 1340
XbaI TCTAGA 1 cut(s) 622
XceI RCATGY 1 cut(s) 338
XspI CTAG 1 cut(s) 623
Zsp2I ATGCAT 2 cut(s) 285, 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.