Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002645

Physical Location & Seq

Genomic Coordinates Forward (+)

3429529 .. 3433483

Gene Structure 3955 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0044000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2466 bp

ATGGAGAATGATCCAGACCCGGAAATGGAAGAGTTGGAGGCGAGGCAGAGGAGCCTAGGCAGAGCCTTCGACTCCTTGAATGTCCAGGCTTCTTCGGTCCTGTTGTTCACCGCGCAGTGGAAGGAGCTAGAGGACCATTTTGAGTCGACCCGGAAGGAGCTCCGGACCCGGTTGGCGGAGCTGGAGGAGCGCGTGAGGCTAGTCGCGGAGGTGGAGGCGAGGGCGGTGAGGTTGAAGACGGAAATGGAGGCTAAAGCTAAGGACTTGGGGGAAATGGAGGAGGTGGTGGAGCAGAAGCGGCGAGAGGTTGAAGAAGGTAATAGTCAGCTGTGTTGTATTAGCTTGTTGATTGAAGAAAACAGAGAAGAGCTTAGAGTTTGTGAGAGTCAGTGTTCGCATTTTGATAGATTGGTTAAAGAGAGGTCTAGGAAGTTGAATTGGGTTGAGAAAAGAGTAGAGGAGAAGTTGAATCGGGTTGAGGTGGAAGAGAGGAAGTTAGATGAGATTAGGGGGTTGATTGAGGAGAAAAGGAGAGAACTTGAAGAGTGTGAGAGTGAGTTGGAGTTGAAAGAGGAGAGATTAAGGTTGGTGGAGAAATCGATTGTTAATTGCGATAAGATACTTGATTTGAAGGAGAAATTGGCTAGTGTAGTGGATTTGAAGGTGAAAGATTTCTGCTTGCTGGAGAAATCGATGGAGGAGTGGTCATGTAAGCTTGAAATGAAGGAGAGGGAGCTCGAAGGATGTGTTGCTAAGATAGAAGCAAAAGAGGGACAAGTTGATAGAAAGATTGAGGAGCTTAATTTGGTTCATAACAAGTTCCTTGATGAGGTTCAGTTGAAGGAGAAACATCTCGGTTCACTTGAAGAATCGGTACTAGAGCGCGAGAAGGATTTGCTTTTTTCAGTCCAGAAGTTAGTACAAGAATGTTGCCAGGGAAGTGAGTTCACTAGGGATGGAAGAGGACTAGAGCAGTTCATGGATGAGCATTTGAAGAGAATTGATTCCATGTGTATCGAACTGTCAGCGATTCTTAAAGAGTCCTCAGACCCGGCGAAATTGGTTTTGGATGCAATGCAGGGGTTCTATCCGGACAACAGGGAGTTACATTTTGATTTGATGGTTAGGAGAAGAGGTTGTTGTCTTTTGTTAAAGGAGTTGAAGACAATCTCCCCACAAATTAGTCCTCAGGTGAGAGAGGAGGCAACAAAACTGGCTGCTAATTGGAAGGCCAAGATGACAGTGACTGGTGACAATGACTTGGAGGTTCTGGGCTTCTTGAGGCTTGTTGCTGCTTATGATTTGGCTTCTATTTATGATGCCAAGGAGCTTAAAGGGCTTCTTTCTAGTGTTTCTAATGGTCAGCAAGCAGCTCATATAGGCCAGGCCCTTGGTTTTGCTGCACCTGCATCTGTTCAAAGTTCGCTAGAACCTGCAAAACTCGTGTTGGATTGGATGCAAACTGATTTATCACAATACTGGACAAAAGGTGATGTTCGGCTCGAAGCAACTTCAATCAAAACCTGCATTTTTGTATTACAGCAGCTAATGAGAGTCGTCCCCCATGTCGGACAACATGTGAAAGAGGATGCAATGAAGTTGGCAGTCCAATGGAAAGCAAAATTGGGAGCTAATGCTGAAAATGCCTGGGAGATTTTGGGCTTTTTGCACTTTATAGCTGCATACGAATTGATTTTTACTTTAAATGTTGATGAGATTGTAACGCTTCTTGGGATGATTGCTCAGCATAAACAGGCTCTAGAATTCTGTTGGAAACTTCCTTCTGAAGATAAGATCCCTGGAGAGTTTATCCACTGTCTTGTTGAAAGGAAGCAGCTGATGGAGGCCATTGGATTGATTTATACCTTCAAATTAATTAACAGTATTCCCCCAGTACCACTCTTAAAAGAATACGTGAAGGAAAAGATGGAGTGTTGCAGAGATGGTTACACAAAAGAGAAATTACATGATGAAAAGGTTAAGGTTGTGGACCAGCACATAACTGATCTAAGACCGGTCATTAACCTCATCAAAGACTACAACCTGGAATCGGAATATCCATCTTCGAATGTTGAAATGGAAATAACTCAACTGGAGAAAGTAAAGGAGAAATGGAGAATAGTTCAGTCAGGGAATGTGGATAAAGAGCAGAAAAGAGGAACCAAACGTCGTAGCAGCACTCCCCCCACTAAACTCGAACCACAACAGCAGCCCAATAAATCTCATCGGACAGCTGTAATATCTCCTAGGCCTCATCCATTGCAACTTTACACCCCGGTGTATCTGCAGCCAAATGCTTCACCTTTGCTGTTACACTCCAGGCAGTTTGGCACCACTCAGAATGCTGGAATACTCCACCCAAGTCCTAGTTATGCTGGAATACTCCACCCAAGTCCTAGTTATCGTCCTAATCTACCCCCATGGAACCACCTCCCCAATTTTGGTAGTGCCTTCTTTCCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0015980 GO:0016740 GO:0016765 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00190 ko00860 ko01100 ko01110 ko04714 map00190 map00860 map01100 map01110 map04714

Pfam Domains

Protein Families

UbiA

Protein Analysis

821

Amino Acids

94.54

Weight (kDa)

5.63

Isoelectric Point (pI)

48.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Frigida	PF07899	319 - 467	7.8e-33	Frigida-like protein
Frigida	PF07899	469 - 704	8.9e-47	Frigida-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44520
fragaria_vesca	FvH4_2g12720 FvH4_2g12720
malus_domestica	MD08G1235300.v1.1 MD15G1426600.v1.1
prunus_persica	Prupe.1G571600_v2.0.a1
pyrus_communis	pycom08g20360 pycom15g37750 pycom15g37820 pycom15g37850
rosa_chinensis	RchiOBHm_Chr6g0271171 RchiOBHm_Chr6g0273481 RchiOBHm_Chr7g0200821
rosa_laevigata	RLG00000007702 RLG00000013613 RLG00000030224
rosa_multiflora	Rmu_sc0000367.1_g000112 Rmu_sc0004127.1_g000003 Rmu_sc0005891.1_g000033 Rmu_sc0010380.1_g000010 Rmu_sc0010380.1_g000011
rosa_roxburghii	Rroxscaffold_166G00440760 Rroxscaffold_4G00302880 Rroxscaffold_6G00423080 Rroxscaffold_7G00195280
rosa_rugosa	Rorug03G0044000 Rorug06G0075700 Rorug06G0075800
rosa_samantha	Rh4DG151900 Rh6AG190400 Rh6BG193900 Rh6CG179300 Rh6CG193400 Rh6DG171000 Rh6DG185000 Rh7DG191800
rosa_wichuraiana	Rw0G020450 Rw1G038810 Rw6G016660 Rw7G013720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1414
Acc36I	ACCTGC	3 cut(s)	1414, 1441, 1532
AccB1I	GGYRCC	1 cut(s)	2330
AccI	GTMKAC	1 cut(s)	146
AccII	CGCG	4 cut(s)	113, 192, 206, 885
AccIII	TCCGGA	2 cut(s)	162, 1090
AciI	CCGC	5 cut(s)	111, 176, 206, 224, 298
AclWI	GGATC	2 cut(s)	5, 1789
AcsI	RAATTY	1 cut(s)	1763
AcuI	CTGAAG	1 cut(s)	1806
AfaI	GTAC	3 cut(s)	876, 921, 1896
AfiI	CCNNNNNNNGG	7 cut(s)	25, 117, 175, 829, 1568, 2050, 2441
AflIII	ACRYGT	1 cut(s)	1576
AgeI	ACCGGT	1 cut(s)	2014
AjnI	CCWGG	7 cut(s)	84, 933, 1383, 1646, 1798, 2043, 2318
AjuI	GAANNNNNNNTTGG	6 cut(s)	623, 655, 1049, 1081, 1607, 1639
AleI	CACNNNNGTG	1 cut(s)	2276
Alw21I	GWGCWC	2 cut(s)	162, 738
AlwI	GGATC	2 cut(s)	5, 1789
AlwNI	CAGNNNCTG	1 cut(s)	1247
Aor13HI	TCCGGA	2 cut(s)	162, 1090
AoxI	GGCC	5 cut(s)	1230, 1381, 1386, 1845, 2249
ApoI	RAATTY	1 cut(s)	1763
AseI	ATTAAT	1 cut(s)	1874
AsiGI	ACCGGT	1 cut(s)	2014
Asp700I	GAANNNNTTC	2 cut(s)	671, 1003
AspA2I	CCTAGG	2 cut(s)	55, 2246
AspLEI	GCGC	3 cut(s)	115, 192, 885
AspS9I	GGNCC	5 cut(s)	97, 133, 165, 1387, 1990
AsuC2I	CCSGG	5 cut(s)	20, 151, 169, 1052, 2276
AsuHPI	GGTGA	7 cut(s)	100, 238, 676, 1204, 1262, 1502, 2292
AsuII	TTCGAA	1 cut(s)	2066
AvaII	GGWCC	4 cut(s)	97, 133, 165, 1990
AvrII	CCTAGG	2 cut(s)	55, 2246
AxyI	CCTNAGG	1 cut(s)	1188
BanI	GGYRCC	1 cut(s)	2330
BanII	GRGCYC	2 cut(s)	162, 738
BarI	GAAGNNNNNNTAC	2 cut(s)	858, 890
BauI	CACGAG	1 cut(s)	1442
BbsI	GAAGAC	2 cut(s)	242, 1169
Bbv12I	GWGCWC	2 cut(s)	162, 738
BccI	CCATC	7 cut(s)	688, 950, 1114, 1834, 1921, 1937, 2068
BcgI	CGANNNNNNTGC	2 cut(s)	49, 83
BciT130I	CCWGG	7 cut(s)	86, 935, 1385, 1648, 1800, 2045, 2320
BcnI	CCSGG	5 cut(s)	20, 151, 169, 1052, 2276
BfmI	CTRYAG	1 cut(s)	2285
BfuAI	ACCTGC	3 cut(s)	1414, 1441, 1532
BlnI	CCTAGG	2 cut(s)	55, 2246
BlpI	GCTNAGC	1 cut(s)	1743
Bme18I	GGWCC	4 cut(s)	97, 133, 165, 1990
BmgT120I	GGNCC	5 cut(s)	97, 133, 165, 1387, 1990
BmiI	GGNNCC	5 cut(s)	53, 167, 2161, 2332, 2426
BmrI	ACTGGG	1 cut(s)	1886
BmsI	GCATC	5 cut(s)	1060, 1309, 1418, 1446, 1579
BmuI	ACTGGG	1 cut(s)	1886
BpiI	GAAGAC	2 cut(s)	242, 1169
BpmI	CTGGAG	5 cut(s)	203, 704, 1821, 2114, 2302
Bpu10I	CCTNAGC	1 cut(s)	258
Bpu1102I	GCTNAGC	1 cut(s)	1743
Bpu14I	TTCGAA	1 cut(s)	2066
BpuEI	CTTGAG	1 cut(s)	1300
BpuMI	CCSGG	5 cut(s)	20, 151, 169, 1052, 2276
Bsa29I	ATCGAT	2 cut(s)	599, 692
BsaAI	YACGTR	1 cut(s)	1915
BsaJI	CCNNGG	9 cut(s)	55, 934, 1323, 1390, 1647, 1798, 2246, 2274, 2420
BsaWI	WCCGGW	3 cut(s)	162, 1090, 2014
BsaXI	ACNNNNNCTCC	4 cut(s)	689, 719, 1120, 1150
Bsc4I	CCNNNNNNNGG	7 cut(s)	25, 117, 175, 829, 1568, 2050, 2441
Bse118I	RCCGGY	1 cut(s)	2014
Bse1I	ACTGG	5 cut(s)	1218, 1252, 1484, 1892, 2097
Bse21I	CCTNAGG	1 cut(s)	1188
Bse3DI	GCAATG	3 cut(s)	1080, 1599, 2258
BseAI	TCCGGA	2 cut(s)	162, 1090
BseBI	CCWGG	7 cut(s)	86, 935, 1385, 1648, 1800, 2045, 2320
BseCI	ATCGAT	2 cut(s)	599, 692
BseDI	CCNNGG	9 cut(s)	55, 934, 1323, 1390, 1647, 1798, 2246, 2274, 2420
BseGI	GGATG	8 cut(s)	749, 961, 988, 1075, 1461, 1594, 1740, 2254
BseLI	CCNNNNNNNGG	7 cut(s)	25, 117, 175, 829, 1568, 2050, 2441
BseMI	GCAATG	3 cut(s)	1080, 1599, 2258
BseMII	CTCAG	4 cut(s)	1059, 1202, 1757, 2351
BseNI	ACTGG	5 cut(s)	1218, 1252, 1484, 1892, 2097
BseRI	GAGGAG	9 cut(s)	64, 200, 293, 473, 536, 587, 713, 809, 1214
BsgI	GTGCAG	1 cut(s)	1386
Bsh1236I	CGCG	4 cut(s)	113, 192, 206, 885
BshFI	GGCC	5 cut(s)	1232, 1383, 1388, 1847, 2251
BshNI	GGYRCC	1 cut(s)	2330
BshTI	ACCGGT	1 cut(s)	2014
BshVI	ATCGAT	2 cut(s)	599, 692
BsiHKAI	GWGCWC	2 cut(s)	162, 738
BsiSI	CCGG	8 cut(s)	20, 151, 163, 169, 1052, 1091, 2015, 2276
BslFI	GGGAC	2 cut(s)	786, 1544
BslI	CCNNNNNNNGG	7 cut(s)	25, 117, 175, 829, 1568, 2050, 2441
BsmFI	GGGAC	2 cut(s)	786, 1544
BsmI	GAATGC	1 cut(s)	2347
BsnI	GGCC	5 cut(s)	1232, 1383, 1388, 1847, 2251
Bsp119I	TTCGAA	1 cut(s)	2066
Bsp1286I	GDGCHC	2 cut(s)	162, 738
Bsp13I	TCCGGA	2 cut(s)	162, 1090
Bsp143I	GATC	3 cut(s)	10, 1794, 2005
Bsp1720I	GCTNAGC	1 cut(s)	1743
Bsp19I	CCATGG	1 cut(s)	2420
BspACI	CCGC	5 cut(s)	111, 176, 206, 224, 298
BspANI	GGCC	5 cut(s)	1232, 1383, 1388, 1847, 2251
BspCNI	CTCAG	4 cut(s)	1058, 1201, 1756, 2350
BspDI	ATCGAT	2 cut(s)	599, 692
BspEI	TCCGGA	2 cut(s)	162, 1090
BspFNI	CGCG	4 cut(s)	113, 192, 206, 885
BspLI	GGNNCC	5 cut(s)	53, 167, 2161, 2332, 2426
BspMAI	CTGCAG	1 cut(s)	2289
BspMI	ACCTGC	3 cut(s)	1414, 1441, 1532
BspPI	GGATC	2 cut(s)	5, 1789
BspQI	GCTCTTC	1 cut(s)	360
BspT104I	TTCGAA	1 cut(s)	2066
BspT107I	GGYRCC	1 cut(s)	2330
BsrDI	GCAATG	3 cut(s)	1080, 1599, 2258
BsrFI	RCCGGY	1 cut(s)	2014
BsrI	ACTGG	5 cut(s)	1218, 1252, 1484, 1892, 2097
BssAI	RCCGGY	1 cut(s)	2014
BssECI	CCNNGG	9 cut(s)	55, 934, 1323, 1390, 1647, 1798, 2246, 2274, 2420
BssMI	GATC	3 cut(s)	10, 1794, 2005
BssSI	CACGAG	1 cut(s)	1442
BssT1I	CCWWGG	5 cut(s)	55, 1323, 1390, 2246, 2420
Bst2BI	CACGAG	1 cut(s)	1442
Bst2UI	CCWGG	7 cut(s)	86, 935, 1385, 1648, 1800, 2045, 2320
Bst4CI	ACNGT	4 cut(s)	1023, 1243, 1817, 1883
Bst6I	CTCTTC	7 cut(s)	24, 360, 480, 537, 955, 989, 1126
BstBAI	YACGTR	1 cut(s)	1915
BstBI	TTCGAA	1 cut(s)	2066
BstC8I	GCNNGC	2 cut(s)	680, 1368
BstDEI	CTNAG	8 cut(s)	258, 371, 753, 1045, 1188, 1743, 2009, 2337
BstDSI	CCRYGG	1 cut(s)	2420
BstENI	CCTNNNNNAGG	1 cut(s)	827
BstF5I	GGATG	8 cut(s)	749, 961, 988, 1075, 1461, 1594, 1740, 2254
BstFNI	CGCG	4 cut(s)	113, 192, 206, 885
BstHHI	GCGC	3 cut(s)	115, 192, 885
BstKTI	GATC	3 cut(s)	13, 1797, 2008
BstMBI	GATC	3 cut(s)	10, 1794, 2005
BstMWI	GCNNNNNNNGC	6 cut(s)	187, 196, 298, 1336, 1406, 1643
BstNI	CCWGG	7 cut(s)	86, 935, 1385, 1648, 1800, 2045, 2320
BstNSI	RCATGY	1 cut(s)	1580
BstSFI	CTRYAG	1 cut(s)	2285
BstUI	CGCG	4 cut(s)	113, 192, 206, 885
BstV2I	GAAGAC	2 cut(s)	242, 1169
BstX2I	RGATCY	1 cut(s)	1794
BstXI	CCANNNNNNTGG	1 cut(s)	1391
BstYI	RGATCY	1 cut(s)	1794
Bsu15I	ATCGAT	2 cut(s)	599, 692
Bsu36I	CCTNAGG	1 cut(s)	1188
BsuRI	GGCC	5 cut(s)	1232, 1383, 1388, 1847, 2251
BsuTUI	ATCGAT	2 cut(s)	599, 692
BtgI	CCRYGG	1 cut(s)	2420
BtsCI	GGATG	8 cut(s)	749, 961, 988, 1075, 1461, 1594, 1740, 2254
BtsI	GCAGTG	1 cut(s)	122
BtsIMutI	CAGTG	4 cut(s)	122, 395, 1248, 1813
BveI	ACCTGC	3 cut(s)	1414, 1441, 1532
Cac8I	GCNNGC	2 cut(s)	680, 1368
CaiI	CAGNNNCTG	1 cut(s)	1247
CfoI	GCGC	3 cut(s)	115, 192, 885
Cfr10I	RCCGGY	1 cut(s)	2014
Cfr13I	GGNCC	5 cut(s)	97, 133, 165, 1387, 1990
ClaI	ATCGAT	2 cut(s)	599, 692
Csp6I	GTAC	3 cut(s)	875, 920, 1895
CspAI	ACCGGT	1 cut(s)	2014
CviAII	CATG	7 cut(s)	708, 979, 1009, 1565, 1577, 1967, 2421
CviQI	GTAC	3 cut(s)	875, 920, 1895
DdeI	CTNAG	8 cut(s)	258, 371, 753, 1045, 1188, 1743, 2009, 2337
DpnI	GATC	3 cut(s)	12, 1796, 2007
DpnII	GATC	3 cut(s)	10, 1794, 2005
DraI	TTTAAA	1 cut(s)	1704
Eam1104I	CTCTTC	7 cut(s)	24, 360, 480, 537, 955, 989, 1126
EarI	CTCTTC	7 cut(s)	24, 360, 480, 537, 955, 989, 1126
EciI	GGCGGA	1 cut(s)	191
Ecl136II	GAGCTC	2 cut(s)	160, 736
Eco130I	CCWWGG	5 cut(s)	55, 1323, 1390, 2246, 2420
Eco147I	AGGCCT	1 cut(s)	2251
Eco24I	GRGCYC	2 cut(s)	162, 738
Eco47I	GGWCC	4 cut(s)	97, 133, 165, 1990
Eco53kI	GAGCTC	2 cut(s)	160, 736
Eco57I	CTGAAG	1 cut(s)	1806
Eco81I	CCTNAGG	1 cut(s)	1188
EcoICRI	GAGCTC	2 cut(s)	160, 736
EcoNI	CCTNNNNNAGG	1 cut(s)	827
EcoO109I	RGGNCCY	1 cut(s)	1387
EcoRI	GAATTC	1 cut(s)	1763
EcoRII	CCWGG	7 cut(s)	84, 933, 1383, 1646, 1798, 2043, 2318
EcoT14I	CCWWGG	5 cut(s)	55, 1323, 1390, 2246, 2420
EcoT38I	GRGCYC	2 cut(s)	162, 738
ErhI	CCWWGG	5 cut(s)	55, 1323, 1390, 2246, 2420
FaeI	CATG	7 cut(s)	711, 982, 1012, 1568, 1580, 1970, 2424
FalI	AAGNNNNNCTT	2 cut(s)	1326, 1358
FaqI	GGGAC	2 cut(s)	786, 1544
FatI	CATG	7 cut(s)	707, 978, 1008, 1564, 1576, 1966, 2420
FblI	GTMKAC	1 cut(s)	146
FokI	GGATG	8 cut(s)	756, 968, 995, 1082, 1468, 1601, 1747, 2241
FriOI	GRGCYC	2 cut(s)	162, 738
GlaI	GCGC	3 cut(s)	114, 191, 884
GsuI	CTGGAG	5 cut(s)	203, 704, 1821, 2114, 2302
HaeIII	GGCC	5 cut(s)	1232, 1383, 1388, 1847, 2251
HapII	CCGG	8 cut(s)	20, 151, 163, 169, 1052, 1091, 2015, 2276
HhaI	GCGC	3 cut(s)	115, 192, 885
Hin1II	CATG	7 cut(s)	711, 982, 1012, 1568, 1580, 1970, 2424
Hin6I	GCGC	3 cut(s)	113, 190, 883
HinP1I	GCGC	3 cut(s)	113, 190, 883
HincII	GTYRAC	1 cut(s)	147
HindII	GTYRAC	1 cut(s)	147
HindIII	AAGCTT	1 cut(s)	713
HpaII	CCGG	8 cut(s)	20, 151, 163, 169, 1052, 1091, 2015, 2276
HphI	GGTGA	7 cut(s)	100, 238, 676, 1204, 1262, 1502, 2292
Hpy166II	GTNNAC	5 cut(s)	108, 147, 860, 948, 1990
Hpy188I	TCNGA	7 cut(s)	1048, 1571, 1786, 2053, 2229, 2340, 2465
Hpy188III	TCNNGA	6 cut(s)	14, 163, 910, 1091, 1279, 1760
Hpy8I	GTNNAC	5 cut(s)	108, 147, 860, 948, 1990
Hpy99I	CGWCG	1 cut(s)	2172
HpyCH4III	ACNGT	4 cut(s)	1023, 1243, 1817, 1883
HpyCH4IV	ACGT	2 cut(s)	1914, 2167
HpyF10VI	GCNNNNNNNGC	6 cut(s)	187, 196, 298, 1336, 1406, 1643
HpyF3I	CTNAG	8 cut(s)	258, 371, 753, 1045, 1188, 1743, 2009, 2337
HpySE526I	ACGT	2 cut(s)	1914, 2167
Hsp92II	CATG	7 cut(s)	711, 982, 1012, 1568, 1580, 1970, 2424
HspAI	GCGC	3 cut(s)	113, 190, 883
Kpn2I	TCCGGA	2 cut(s)	162, 1090
Kzo9I	GATC	3 cut(s)	10, 1794, 2005
LguI	GCTCTTC	1 cut(s)	360
LweI	GCATC	5 cut(s)	1060, 1309, 1418, 1446, 1579
MaeII	ACGT	2 cut(s)	1914, 2167
MaeIII	GTNAC	6 cut(s)	1104, 1243, 1250, 1720, 1946, 2310
MalI	GATC	3 cut(s)	12, 1796, 2007
MboI	GATC	3 cut(s)	10, 1794, 2005
MflI	RGATCY	1 cut(s)	1794
MhlI	GDGCHC	2 cut(s)	162, 738
MlyI	GAGTC	5 cut(s)	65, 152, 394, 1049, 1563
MmeI	TCCRAC	5 cut(s)	15, 540, 1428, 1549, 1751
MroI	TCCGGA	2 cut(s)	162, 1090
MroXI	GAANNNNTTC	2 cut(s)	671, 1003
MslI	CAYNNNNRTG	1 cut(s)	2276
MspA1I	CMGCKG	3 cut(s)	328, 1837, 2234
MspI	CCGG	8 cut(s)	20, 151, 163, 169, 1052, 1091, 2015, 2276
Mva1269I	GAATGC	1 cut(s)	2347
MvaI	CCWGG	7 cut(s)	86, 935, 1385, 1648, 1800, 2045, 2320
MvnI	CGCG	4 cut(s)	113, 192, 206, 885
MwoI	GCNNNNNNNGC	6 cut(s)	187, 196, 298, 1336, 1406, 1643
NciI	CCSGG	5 cut(s)	20, 151, 169, 1052, 2276
NcoI	CCATGG	1 cut(s)	2420
NdeII	GATC	3 cut(s)	10, 1794, 2005
NlaIII	CATG	7 cut(s)	711, 982, 1012, 1568, 1580, 1970, 2424
NlaIV	GGNNCC	5 cut(s)	53, 167, 2161, 2332, 2426
NmuCI	GTSAC	2 cut(s)	1243, 1250
NspI	RCATGY	1 cut(s)	1580
NspV	TTCGAA	1 cut(s)	2066
OliI	CACNNNNGTG	1 cut(s)	2276
PacI	TTAATTAA	1 cut(s)	1878
PaqCI	CACCTGC	1 cut(s)	1414
PceI	AGGCCT	1 cut(s)	2251
PciI	ACATGT	1 cut(s)	1576
PciSI	GCTCTTC	1 cut(s)	360
PctI	GAATGC	1 cut(s)	2347
PdmI	GAANNNNTTC	2 cut(s)	671, 1003
PfeI	GAWTC	5 cut(s)	469, 869, 1004, 1030, 2048
PinAI	ACCGGT	1 cut(s)	2014
PleI	GAGTC	5 cut(s)	65, 151, 393, 1048, 1562
PpsI	GAGTC	5 cut(s)	65, 151, 393, 1048, 1562
Ppu21I	YACGTR	1 cut(s)	1915
PscI	ACATGT	1 cut(s)	1576
PshBI	ATTAAT	1 cut(s)	1874
Psp124BI	GAGCTC	2 cut(s)	162, 738
Psp6I	CCWGG	7 cut(s)	84, 933, 1383, 1646, 1798, 2043, 2318
PspGI	CCWGG	7 cut(s)	84, 933, 1383, 1646, 1798, 2043, 2318
PspN4I	GGNNCC	5 cut(s)	53, 167, 2161, 2332, 2426
PspPI	GGNCC	5 cut(s)	97, 133, 165, 1387, 1990
PstI	CTGCAG	1 cut(s)	2289
PstNI	CAGNNNCTG	1 cut(s)	1247
PsuI	RGATCY	1 cut(s)	1794
PvuII	CAGCTG	3 cut(s)	328, 1837, 2234
RsaI	GTAC	3 cut(s)	876, 921, 1896
RsaNI	GTAC	3 cut(s)	875, 920, 1895
RseI	CAYNNNNRTG	1 cut(s)	2276
SacI	GAGCTC	2 cut(s)	162, 738
SalI	GTCGAC	1 cut(s)	145
SapI	GCTCTTC	1 cut(s)	360
Sau3AI	GATC	3 cut(s)	10, 1794, 2005
Sau96I	GGNCC	5 cut(s)	97, 133, 165, 1387, 1990
SchI	GAGTC	5 cut(s)	65, 152, 394, 1049, 1563
SduI	GDGCHC	2 cut(s)	162, 738
SfaNI	GCATC	5 cut(s)	1060, 1309, 1418, 1446, 1579
SfcI	CTRYAG	1 cut(s)	2285
SfuI	TTCGAA	1 cut(s)	2066
SinI	GGWCC	4 cut(s)	97, 133, 165, 1990
SmiMI	CAYNNNNRTG	1 cut(s)	2276
SmlI	CTYRAG	1 cut(s)	1279
SmoI	CTYRAG	1 cut(s)	1279
SseBI	AGGCCT	1 cut(s)	2251
SsiI	CCGC	5 cut(s)	111, 176, 206, 224, 298
SstI	GAGCTC	2 cut(s)	162, 738
StuI	AGGCCT	1 cut(s)	2251
StyI	CCWWGG	5 cut(s)	55, 1323, 1390, 2246, 2420
TaaI	ACNGT	4 cut(s)	1023, 1243, 1817, 1883
TaiI	ACGT	2 cut(s)	1917, 2170
TaqI	TCGA	9 cut(s)	69, 146, 599, 692, 738, 1017, 1503, 2066, 2196
TaqII	GACCGA	1 cut(s)	85
TatI	WGTACW	1 cut(s)	919
TauI	GCSGC	1 cut(s)	301
TfiI	GAWTC	5 cut(s)	469, 869, 1004, 1030, 2048
TscAI	CASTG	4 cut(s)	122, 395, 1248, 1820
TseFI	GTSAC	2 cut(s)	1243, 1250
Tsp45I	GTSAC	2 cut(s)	1243, 1250
TspDTI	ATGAA	5 cut(s)	737, 800, 967, 1610, 1986
TspGWI	ACGGA	1 cut(s)	254
TspRI	CASTG	4 cut(s)	122, 395, 1248, 1820
VpaK11BI	GGWCC	4 cut(s)	97, 133, 165, 1990
VspI	ATTAAT	1 cut(s)	1874
XagI	CCTNNNNNAGG	1 cut(s)	827
XapI	RAATTY	1 cut(s)	1763
XbaI	TCTAGA	1 cut(s)	1759
XceI	RCATGY	1 cut(s)	1580
XmaJI	CCTAGG	2 cut(s)	55, 2246
XmiI	GTMKAC	1 cut(s)	146
XmnI	GAANNNNTTC	2 cut(s)	671, 1003

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.