Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002645

Physical Location & Seq

Genomic Coordinates Forward (+)

28153320 .. 28154179

Gene Structure 860 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG179300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGCTAGTTGCTGCAACTTCTGGAACTGGATTTGTTCTTGGAAGTGGCAATGCCGTCGATTTTGCTGGACTTTGTTGGATATGTGTTGGTACCATGATGTTTGCAGCATCTGCTAACTCTTTAAATCAGGTGTTCGAGAAGTATAATGATGCCAAACTGAAGAGAATGATGCAAAGACCCCTACCTTCAGGACGCATTACTAGGCCTCATGCAATTGCCTGGGCATTTACTGCTGGCTTAGCTGGCACTGCTTTGTTGGCAAGCAAGGTGGCCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0015980 GO:0016740 GO:0016765 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00190 ko00860 ko01100 ko01110 ko04714 map00190 map00860 map01100 map01110 map04714

Pfam Domains

Protein Families

UbiA

Protein Analysis

92

Amino Acids

9.62

Weight (kDa)

9.89

Isoelectric Point (pI)

10.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UbiA	PF01040	6 - 87	3.1e-17	UbiA prenyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44520
fragaria_vesca	FvH4_2g12720 FvH4_2g12720
malus_domestica	MD08G1235300.v1.1 MD15G1426600.v1.1
prunus_persica	Prupe.1G571600_v2.0.a1
pyrus_communis	pycom08g20360 pycom15g37750 pycom15g37820 pycom15g37850
rosa_chinensis	RchiOBHm_Chr6g0271171 RchiOBHm_Chr6g0273481 RchiOBHm_Chr7g0200821
rosa_laevigata	RLG00000007702 RLG00000013613 RLG00000030224
rosa_multiflora	Rmu_sc0000367.1_g000112 Rmu_sc0004127.1_g000003 Rmu_sc0005891.1_g000033 Rmu_sc0010380.1_g000010 Rmu_sc0010380.1_g000011
rosa_roxburghii	Rroxscaffold_166G00440760 Rroxscaffold_4G00302880 Rroxscaffold_6G00423080 Rroxscaffold_7G00195280
rosa_rugosa	Rorug03G0044000 Rorug06G0075700 Rorug06G0075800
rosa_samantha	Rh4DG151900 Rh6AG190400 Rh6BG193900 Rh6CG179300 Rh6CG193400 Rh6DG171000 Rh6DG185000 Rh7DG191800
rosa_wichuraiana	Rw0G020450 Rw1G038810 Rw6G016660 Rw7G013720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	89
AccB1I	GGYRCC	1 cut(s)	89
AcuI	CTGAAG	2 cut(s)	171, 179
AfaI	GTAC	1 cut(s)	91
AjnI	CCWGG	1 cut(s)	218
AluBI	AGCT	1 cut(s)	242
AluI	AGCT	1 cut(s)	242
AlwNI	CAGNNNCTG	1 cut(s)	110
AoxI	GGCC	2 cut(s)	203, 270
ApeKI	GCWGC	2 cut(s)	11, 104
Asp718I	GGTACC	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	271
BanI	GGYRCC	1 cut(s)	89
BbvI	GCAGC	1 cut(s)	116
BceAI	ACGGC	1 cut(s)	38
BcgI	CGANNNNNNTGC	2 cut(s)	37, 71
BciT130I	CCWGG	1 cut(s)	220
BfaI	CTAG	2 cut(s)	5, 201
BisI	GCNGC	2 cut(s)	12, 105
BlpI	GCTNAGC	1 cut(s)	238
BlsI	GCNGC	2 cut(s)	13, 106
Bme1390I	CCNGG	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	2 cut(s)	91, 273
BmrFI	CCNGG	1 cut(s)	220
BmsI	GCATC	3 cut(s)	116, 139, 159
Bpu1102I	GCTNAGC	1 cut(s)	238
BsaJI	CCNNGG	1 cut(s)	219
Bse1I	ACTGG	1 cut(s)	31
Bse3DI	GCAATG	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	1 cut(s)	219
BseMI	GCAATG	1 cut(s)	55
BseNI	ACTGG	1 cut(s)	31
BseXI	GCAGC	1 cut(s)	116
BshFI	GGCC	2 cut(s)	205, 272
BshNI	GGYRCC	1 cut(s)	89
BsnI	GGCC	2 cut(s)	205, 272
Bsp1720I	GCTNAGC	1 cut(s)	238
BspANI	GGCC	2 cut(s)	205, 272
BspLI	GGNNCC	2 cut(s)	91, 273
BspT107I	GGYRCC	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	1 cut(s)	219
Bst2UI	CCWGG	1 cut(s)	220
Bst6I	CTCTTC	1 cut(s)	155
BstAPI	GCANNNNNTGC	2 cut(s)	110, 230
BstC8I	GCNNGC	3 cut(s)	235, 244, 262
BstDEI	CTNAG	1 cut(s)	238
BstMWI	GCNNNNNNNGC	6 cut(s)	110, 230, 239, 243, 248, 257
BstNI	CCWGG	1 cut(s)	220
BstSCI	CCNGG	1 cut(s)	218
BstV1I	GCAGC	1 cut(s)	116
BsuRI	GGCC	2 cut(s)	205, 272
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	3 cut(s)	235, 244, 262
CaiI	CAGNNNCTG	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	271
CseI	GACGC	1 cut(s)	201
Csp6I	GTAC	1 cut(s)	90
CspCI	CAANNNNNGTGG	1 cut(s)	249
CviAII	CATG	3 cut(s)	94, 209, 276
CviJI	RGCY	4 cut(s)	205, 237, 242, 272
CviKI_1	RGCY	4 cut(s)	205, 237, 242, 272
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	1 cut(s)	238
DraI	TTTAAA	1 cut(s)	123
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco147I	AGGCCT	1 cut(s)	205
Eco57I	CTGAAG	2 cut(s)	171, 179
EcoRII	CCWGG	1 cut(s)	218
FaeI	CATG	3 cut(s)	97, 212, 279
FaiI	YATR	5 cut(s)	82, 95, 144, 210, 277
FatI	CATG	3 cut(s)	93, 208, 275
Fnu4HI	GCNGC	2 cut(s)	12, 105
Fsp4HI	GCNGC	2 cut(s)	12, 105
FspBI	CTAG	2 cut(s)	5, 201
GluI	GCNGC	2 cut(s)	12, 105
HaeIII	GGCC	2 cut(s)	205, 272
HgaI	GACGC	1 cut(s)	201
Hin1II	CATG	3 cut(s)	97, 212, 279
Hpy188III	TCNNGA	3 cut(s)	21, 136, 189
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	1 cut(s)	195
HpyCH4V	TGCA	4 cut(s)	14, 104, 172, 212
HpyF10VI	GCNNNNNNNGC	6 cut(s)	110, 230, 239, 243, 248, 257
HpyF3I	CTNAG	1 cut(s)	238
Hsp92II	CATG	3 cut(s)	97, 212, 279
KpnI	GGTACC	1 cut(s)	93
LpnPI	CCDG	9 cut(s)	6, 12, 51, 113, 174, 205, 219, 228, 232
Lsp1109I	GCAGC	1 cut(s)	116
LweI	GCATC	3 cut(s)	116, 139, 159
MaeI	CTAG	2 cut(s)	5, 201
MboII	GAAGA	1 cut(s)	172
MfeI	CAATTG	1 cut(s)	213
MluCI	AATT	1 cut(s)	213
MmeI	TCCRAC	1 cut(s)	56
MnlI	CCTC	1 cut(s)	216
MseI	TTAA	1 cut(s)	122
MspR9I	CCNGG	1 cut(s)	220
MunI	CAATTG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	220
MwoI	GCNNNNNNNGC	6 cut(s)	110, 230, 239, 243, 248, 257
NlaIII	CATG	3 cut(s)	97, 212, 279
NlaIV	GGNNCC	2 cut(s)	91, 273
PceI	AGGCCT	1 cut(s)	205
PkrI	GCNGC	2 cut(s)	13, 106
Psp6I	CCWGG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	218
PspN4I	GGNNCC	2 cut(s)	91, 273
PspPI	GGNCC	1 cut(s)	271
PstNI	CAGNNNCTG	1 cut(s)	110
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	122
SatI	GCNGC	2 cut(s)	12, 105
Sau96I	GGNCC	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	220
SetI	ASST	4 cut(s)	132, 187, 244, 270
SfaNI	GCATC	3 cut(s)	116, 139, 159
Sse9I	AATT	1 cut(s)	213
SseBI	AGGCCT	1 cut(s)	205
SspMI	CTAG	2 cut(s)	5, 201
StuI	AGGCCT	1 cut(s)	205
StyD4I	CCNGG	1 cut(s)	218
TaqI	TCGA	2 cut(s)	57, 135
TasI	AATT	1 cut(s)	213
Tru1I	TTAA	1 cut(s)	122
Tru9I	TTAA	1 cut(s)	122
TscAI	CASTG	1 cut(s)	253
TseI	GCWGC	2 cut(s)	11, 104
TspRI	CASTG	1 cut(s)	253
XspI	CTAG	2 cut(s)	5, 201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.