Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002645

Physical Location & Seq

Genomic Coordinates Forward (+)

52717218 .. 52721283

Gene Structure 4066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1426600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGATGGTTGCAGCATCTGCTAATTCCTTAAATCAGGCGTTTGAGAAGCAAAATGATGCCAAAATGAACAGAACGAAGAACAGACCACTACCTTCAGGACGCATTACGATCCCTCATGCAGTCACCTTGGCGTCTGCTGCTGGTTTAGCTGGCACTGCTTTGTTAGCAAGCAAGGCTAATATGTTGGCAGCTGGTCTTGGAGCTTCCAATCTAATACTTTATGCGTTTGTCTACACTCCATTGAAGCAGATTCACCCAGTGAACACATGGGTTGGTGCTGTTGTTGGTGCTATCCCTCCACTTCTAGGTTGGGCTGCAGCTTCCGGCCAGGTTTCCCTCAATGCAATGCTACTCCCAGCTGCTCTCTACTTTTGGCAAATACCTCATTTTATGGCCCTAGCATACTTGTGCCGTAATGACTATGCGCCGGAGGAACAGGAATTTAGGATGTTCTCCCTTGCTGATGCTTCTGGTCAGAGAACAGCCTCGGTAGCTTTAAGGAATTGCATATACATGATCCCTTTGGGGTTCTTGGCCTATGACTGGGGTATGACGTCTGGATGGTTTTGTCTTGAATCTACTCTTCTTACTCTCGCGATAGCTGCAACATCATTTTCGTTCTATCGAGACCGTACTACACATAAAGCAAGGAAGATGTTTCATGCCAGCCTTCTTTACCTTCCTGTATTTATGTCGGGGATTATGTTCCACCGCATCGTTGATAATCAACAAAGCCTTTCTGAAGAGAATTTAGAGAGTAGTGTTGAGGTTTCATTGTCCTCACAAGACGGCAATGTCAAACGGAAGAGTAGGTCGAGGAATTCCACAGATGGCTCCCAAGTTCGCCCACCTGTATCGTACGCCTCTATTGCACCGTTTCCTTTCCTCCCAGTTCCTTCGTATGCCGATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0015980 GO:0016740 GO:0016765 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00190 ko00860 ko01100 ko01110 ko04714 map00190 map00860 map01100 map01110 map04714

Pfam Domains

Protein Families

UbiA

Protein Analysis

305

Amino Acids

33.15

Weight (kDa)

9.26

Isoelectric Point (pI)

45.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UbiA	PF01040	2 - 223	1.7e-45	UbiA prenyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44520
fragaria_vesca	FvH4_2g12720 FvH4_2g12720
malus_domestica	MD08G1235300.v1.1 MD15G1426600.v1.1
prunus_persica	Prupe.1G571600_v2.0.a1
pyrus_communis	pycom08g20360 pycom15g37750 pycom15g37820 pycom15g37850
rosa_chinensis	RchiOBHm_Chr6g0271171 RchiOBHm_Chr6g0273481 RchiOBHm_Chr7g0200821
rosa_laevigata	RLG00000007702 RLG00000013613 RLG00000030224
rosa_multiflora	Rmu_sc0000367.1_g000112 Rmu_sc0004127.1_g000003 Rmu_sc0005891.1_g000033 Rmu_sc0010380.1_g000010 Rmu_sc0010380.1_g000011
rosa_roxburghii	Rroxscaffold_166G00440760 Rroxscaffold_4G00302880 Rroxscaffold_6G00423080 Rroxscaffold_7G00195280
rosa_rugosa	Rorug03G0044000 Rorug06G0075700 Rorug06G0075800
rosa_samantha	Rh4DG151900 Rh6AG190400 Rh6BG193900 Rh6CG179300 Rh6CG193400 Rh6DG171000 Rh6DG185000 Rh7DG191800
rosa_wichuraiana	Rw0G020450 Rw1G038810 Rw6G016660 Rw7G013720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	794
AatII	GACGTC	1 cut(s)	557
AccI	GTMKAC	1 cut(s)	231
AccII	CGCG	1 cut(s)	596
AciI	CCGC	1 cut(s)	712
AclWI	GGATC	3 cut(s)	103, 511, 902
AcoI	YGGCCR	1 cut(s)	325
AcsI	RAATTY	3 cut(s)	440, 748, 820
AcuI	CTGAAG	2 cut(s)	78, 762
AcyI	GRCGYC	2 cut(s)	131, 554
AdeI	CACNNNGTG	1 cut(s)	259
AfaI	GTAC	2 cut(s)	634, 860
AfiI	CCNNNNNNNGG	2 cut(s)	305, 543
AgsI	TTSAA	2 cut(s)	244, 575
AjnI	CCWGG	1 cut(s)	327
AluBI	AGCT	7 cut(s)	149, 191, 203, 320, 359, 494, 602
AluI	AGCT	7 cut(s)	149, 191, 203, 320, 359, 494, 602
Alw26I	GTCTC	1 cut(s)	621
AlwI	GGATC	3 cut(s)	103, 511, 902
AlwNI	CAGNNNCTG	1 cut(s)	17
AoxI	GGCC	3 cut(s)	325, 393, 534
ApeKI	GCWGC	7 cut(s)	11, 137, 188, 314, 317, 359, 602
ApoI	RAATTY	3 cut(s)	440, 748, 820
AspLEI	GCGC	1 cut(s)	427
AspS9I	GGNCC	1 cut(s)	394
AsuHPI	GGTGA	2 cut(s)	115, 245
BbvI	GCAGC	7 cut(s)	23, 124, 200, 301, 329, 346, 589
BccI	CCATC	2 cut(s)	555, 824
BceAI	ACGGC	2 cut(s)	396, 805
BciT130I	CCWGG	1 cut(s)	329
BcoDI	GTCTC	1 cut(s)	621
BfaI	CTAG	2 cut(s)	305, 398
BfmI	CTRYAG	1 cut(s)	315
BisI	GCNGC	7 cut(s)	12, 138, 189, 315, 318, 360, 603
BlsI	GCNGC	7 cut(s)	13, 139, 190, 316, 319, 361, 604
Bme1390I	CCNGG	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	394
BmiI	GGNNCC	1 cut(s)	835
BmrFI	CCNGG	1 cut(s)	329
BmrI	ACTGGG	3 cut(s)	251, 553, 884
BmsI	GCATC	4 cut(s)	23, 46, 454, 723
BmuI	ACTGGG	3 cut(s)	251, 553, 884
BsaHI	GRCGYC	2 cut(s)	131, 554
BsaI	GGTCTC	1 cut(s)	621
BsaJI	CCNNGG	2 cut(s)	126, 486
Bsc4I	CCNNNNNNNGG	2 cut(s)	305, 543
Bse1I	ACTGG	3 cut(s)	257, 548, 890
Bse3DI	GCAATG	2 cut(s)	351, 799
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	2 cut(s)	126, 486
BseGI	GGATG	2 cut(s)	453, 566
BseLI	CCNNNNNNNGG	2 cut(s)	305, 543
BseMI	GCAATG	2 cut(s)	351, 799
BseNI	ACTGG	3 cut(s)	257, 548, 890
BseXI	GCAGC	7 cut(s)	23, 124, 200, 301, 329, 346, 589
BseYI	CCCAGC	1 cut(s)	355
Bsh1236I	CGCG	1 cut(s)	596
BshFI	GGCC	3 cut(s)	327, 395, 536
BsiSI	CCGG	2 cut(s)	324, 428
BsiWI	CGTACG	1 cut(s)	858
BslI	CCNNNNNNNGG	2 cut(s)	305, 543
BsmAI	GTCTC	1 cut(s)	621
BsnI	GGCC	3 cut(s)	327, 395, 536
Bso31I	GGTCTC	1 cut(s)	621
Bsp143I	GATC	3 cut(s)	108, 516, 907
Bsp68I	TCGCGA	1 cut(s)	596
BspACI	CCGC	1 cut(s)	712
BspANI	GGCC	3 cut(s)	327, 395, 536
BspFNI	CGCG	1 cut(s)	596
BspLI	GGNNCC	1 cut(s)	835
BspMAI	CTGCAG	1 cut(s)	319
BspPI	GGATC	3 cut(s)	103, 511, 902
BspTNI	GGTCTC	1 cut(s)	621
BsrDI	GCAATG	2 cut(s)	351, 799
BsrI	ACTGG	3 cut(s)	257, 548, 890
BssECI	CCNNGG	2 cut(s)	126, 486
BssMI	GATC	3 cut(s)	108, 516, 907
BssNI	GRCGYC	2 cut(s)	131, 554
BssT1I	CCWWGG	1 cut(s)	126
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	2 cut(s)	632, 876
Bst6I	CTCTTC	3 cut(s)	588, 738, 800
BstACI	GRCGYC	2 cut(s)	131, 554
BstAPI	GCANNNNNTGC	1 cut(s)	17
BstC8I	GCNNGC	3 cut(s)	151, 169, 667
BstF5I	GGATG	2 cut(s)	453, 566
BstFNI	CGCG	1 cut(s)	596
BstHHI	GCGC	1 cut(s)	427
BstKTI	GATC	3 cut(s)	111, 519, 910
BstMAI	GTCTC	1 cut(s)	621
BstMBI	GATC	3 cut(s)	108, 516, 907
BstMWI	GCNNNNNNNGC	9 cut(s)	17, 137, 146, 155, 164, 173, 491, 602, 869
BstNI	CCWGG	1 cut(s)	329
BstSCI	CCNGG	1 cut(s)	327
BstSFI	CTRYAG	1 cut(s)	315
BstUI	CGCG	1 cut(s)	596
BstV1I	GCAGC	7 cut(s)	23, 124, 200, 301, 329, 346, 589
BsuRI	GGCC	3 cut(s)	327, 395, 536
BtsCI	GGATG	2 cut(s)	453, 566
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	2 cut(s)	153, 264
BtuMI	TCGCGA	1 cut(s)	596
Cac8I	GCNNGC	3 cut(s)	151, 169, 667
CaiI	CAGNNNCTG	1 cut(s)	17
CfoI	GCGC	1 cut(s)	427
Cfr13I	GGNCC	1 cut(s)	394
CseI	GACGC	2 cut(s)	108, 120
Csp6I	GTAC	2 cut(s)	633, 859
CviAII	CATG	5 cut(s)	116, 267, 514, 662, 912
CviQI	GTAC	2 cut(s)	633, 859
DpnI	GATC	3 cut(s)	110, 518, 909
DpnII	GATC	3 cut(s)	108, 516, 907
DraIII	CACNNNGTG	1 cut(s)	259
DrdI	GACNNNNNNGTC	1 cut(s)	794
DseDI	GACNNNNNNGTC	1 cut(s)	794
EaeI	YGGCCR	1 cut(s)	325
Eam1104I	CTCTTC	3 cut(s)	588, 738, 800
EarI	CTCTTC	3 cut(s)	588, 738, 800
Eco130I	CCWWGG	1 cut(s)	126
Eco31I	GGTCTC	1 cut(s)	621
Eco57I	CTGAAG	2 cut(s)	78, 762
EcoRI	GAATTC	1 cut(s)	820
EcoRII	CCWGG	1 cut(s)	327
EcoT14I	CCWWGG	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	5 cut(s)	119, 270, 517, 665, 915
FatI	CATG	5 cut(s)	115, 266, 513, 661, 911
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	7 cut(s)	12, 138, 189, 315, 318, 360, 603
FokI	GGATG	2 cut(s)	460, 573
Fsp4HI	GCNGC	7 cut(s)	12, 138, 189, 315, 318, 360, 603
FspBI	CTAG	2 cut(s)	305, 398
GlaI	GCGC	1 cut(s)	426
GluI	GCNGC	7 cut(s)	12, 138, 189, 315, 318, 360, 603
GsaI	CCCAGC	1 cut(s)	359
HaeIII	GGCC	3 cut(s)	327, 395, 536
HapII	CCGG	2 cut(s)	324, 428
HgaI	GACGC	2 cut(s)	108, 120
HhaI	GCGC	1 cut(s)	427
Hin1I	GRCGYC	2 cut(s)	131, 554
Hin1II	CATG	5 cut(s)	119, 270, 517, 665, 915
Hin6I	GCGC	1 cut(s)	425
HinP1I	GCGC	1 cut(s)	425
HinfI	GANTC	2 cut(s)	250, 575
HpaII	CCGG	2 cut(s)	324, 428
HphI	GGTGA	2 cut(s)	115, 245
Hpy166II	GTNNAC	2 cut(s)	232, 262
Hpy188I	TCNGA	2 cut(s)	477, 742
Hpy188III	TCNNGA	5 cut(s)	96, 558, 572, 595, 626
Hpy8I	GTNNAC	2 cut(s)	232, 262
HpyAV	CCTTC	4 cut(s)	102, 680, 689, 906
HpyCH4III	ACNGT	2 cut(s)	632, 876
HpyCH4IV	ACGT	1 cut(s)	554
HpyCH4V	TGCA	7 cut(s)	11, 119, 317, 344, 507, 605, 872
HpyF10VI	GCNNNNNNNGC	9 cut(s)	17, 137, 146, 155, 164, 173, 491, 602, 869
HpySE526I	ACGT	1 cut(s)	554
Hsp92I	GRCGYC	2 cut(s)	131, 554
Hsp92II	CATG	5 cut(s)	119, 270, 517, 665, 915
HspAI	GCGC	1 cut(s)	425
Kzo9I	GATC	3 cut(s)	108, 516, 907
LmnI	GCTCC	2 cut(s)	200, 839
Lsp1109I	GCAGC	7 cut(s)	23, 124, 200, 301, 329, 346, 589
LweI	GCATC	4 cut(s)	23, 46, 454, 723
MaeI	CTAG	2 cut(s)	305, 398
MaeII	ACGT	1 cut(s)	554
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	3 cut(s)	110, 518, 909
MboI	GATC	3 cut(s)	108, 516, 907
MboII	GAAGA	5 cut(s)	88, 575, 664, 755, 817
MluCI	AATT	5 cut(s)	22, 440, 502, 748, 820
MseI	TTAA	2 cut(s)	29, 497
MslI	CAYNNNNRTG	2 cut(s)	406, 512
MspA1I	CMGCKG	2 cut(s)	191, 359
MspI	CCGG	2 cut(s)	324, 428
MspR9I	CCNGG	1 cut(s)	329
MvaI	CCWGG	1 cut(s)	329
MvnI	CGCG	1 cut(s)	596
MwoI	GCNNNNNNNGC	9 cut(s)	17, 137, 146, 155, 164, 173, 491, 602, 869
NdeII	GATC	3 cut(s)	108, 516, 907
NlaIII	CATG	5 cut(s)	119, 270, 517, 665, 915
NlaIV	GGNNCC	1 cut(s)	835
NmuCI	GTSAC	1 cut(s)	121
NruI	TCGCGA	1 cut(s)	596
PfeI	GAWTC	2 cut(s)	250, 575
Pfl23II	CGTACG	1 cut(s)	858
PkrI	GCNGC	7 cut(s)	13, 139, 190, 316, 319, 361, 604
Psp6I	CCWGG	1 cut(s)	327
PspFI	CCCAGC	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	327
PspLI	CGTACG	1 cut(s)	858
PspN4I	GGNNCC	1 cut(s)	835
PspPI	GGNCC	1 cut(s)	394
PstI	CTGCAG	1 cut(s)	319
PstNI	CAGNNNCTG	1 cut(s)	17
PvuII	CAGCTG	2 cut(s)	191, 359
RruI	TCGCGA	1 cut(s)	596
RsaI	GTAC	2 cut(s)	634, 860
RsaNI	GTAC	2 cut(s)	633, 859
RseI	CAYNNNNRTG	2 cut(s)	406, 512
SaqAI	TTAA	2 cut(s)	29, 497
SatI	GCNGC	7 cut(s)	12, 138, 189, 315, 318, 360, 603
Sau3AI	GATC	3 cut(s)	108, 516, 907
Sau96I	GGNCC	1 cut(s)	394
ScrFI	CCNGG	1 cut(s)	329
SfaNI	GCATC	4 cut(s)	23, 46, 454, 723
SfcI	CTRYAG	1 cut(s)	315
SmiMI	CAYNNNNRTG	2 cut(s)	406, 512
Sse9I	AATT	5 cut(s)	22, 440, 502, 748, 820
SsiI	CCGC	1 cut(s)	712
SspMI	CTAG	2 cut(s)	305, 398
StyD4I	CCNGG	1 cut(s)	327
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	2 cut(s)	632, 876
TaiI	ACGT	1 cut(s)	557
TaqI	TCGA	2 cut(s)	625, 815
TasI	AATT	5 cut(s)	22, 440, 502, 748, 820
TfiI	GAWTC	2 cut(s)	250, 575
Tru1I	TTAA	2 cut(s)	29, 497
Tru9I	TTAA	2 cut(s)	29, 497
TscAI	CASTG	2 cut(s)	160, 264
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	7 cut(s)	11, 137, 188, 314, 317, 359, 602
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	3 cut(s)	80, 650, 762
TspGWI	ACGGA	1 cut(s)	817
TspRI	CASTG	2 cut(s)	160, 264
XapI	RAATTY	3 cut(s)	440, 748, 820
XcmI	CCANNNNNNNNNTGG	2 cut(s)	264, 306
XmiI	GTMKAC	1 cut(s)	231
XspI	CTAG	2 cut(s)	305, 398
ZraI	GACGTC	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.