Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010380.1

Orthogroup ID

OG0002645

Physical Location & Seq

Genomic Coordinates Forward (+)

29460 .. 31733

Gene Structure 2274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010380.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

atgcaaagacccctaccttcaggccgcattacgaggcctcatgcagtcgcctgggcatgtactgctggtttagctggcactgctttgttggcaagcaaggctaatatgctggcagctggtcttgctgcttccaatttaatactttatgcattcgtgtatactccattgaagcaaattcacccagtaaatacatgggttggcgctgttgttggcgctatcccaccacttctaggttgggcggcagcatctggccaggtttcactcaatgcaatgattctcccagctgctctatatttttggcaaatacctcattttatggcccttgcatacttatgccgcaatgactatgctgctggagggtttaggatgttctctcttgctgatgcttctggtcaaagaacagcttcagtggctttaaggaattgtgcttaccttatccctttgggatatgtggcatatgattggggtgtcacttctggatggttttgtattgaatctaccattcttactctcgcaataagtgcaacggcattttcattctataaagaccgtacgacacataaagctaggaggatgtttcacgccagccttctttatcttcctgtatttatgtcagggattctgtttcaccgtatctctgataatcagcaatgccttgttgaagagagttcacagagtattgctgagctttcaatgtcctcacaagatggaaatgtcatccagaaagacaagttaaagaagcatcgcccacctgtatcatatgcttctgttgcaccttttcctttccttccggttccatcatatgtgtcttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0015980 GO:0016740 GO:0016765 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00190 ko00860 ko01100 ko01110 ko04714 map00190 map00860 map01100 map01110 map04714

Pfam Domains

Protein Families

UbiA

Protein Analysis

271

Amino Acids

29.42

Weight (kDa)

9.44

Isoelectric Point (pI)

47.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44520
fragaria_vesca	FvH4_2g12720 FvH4_2g12720
malus_domestica	MD08G1235300.v1.1 MD15G1426600.v1.1
prunus_persica	Prupe.1G571600_v2.0.a1
pyrus_communis	pycom08g20360 pycom15g37750 pycom15g37820 pycom15g37850
rosa_chinensis	RchiOBHm_Chr6g0271171 RchiOBHm_Chr6g0273481 RchiOBHm_Chr7g0200821
rosa_laevigata	RLG00000007702 RLG00000013613 RLG00000030224
rosa_multiflora	Rmu_sc0000367.1_g000112 Rmu_sc0004127.1_g000003 Rmu_sc0005891.1_g000033 Rmu_sc0010380.1_g000010 Rmu_sc0010380.1_g000011
rosa_roxburghii	Rroxscaffold_166G00440760 Rroxscaffold_4G00302880 Rroxscaffold_6G00423080 Rroxscaffold_7G00195280
rosa_rugosa	Rorug03G0044000 Rorug06G0075700 Rorug06G0075800
rosa_samantha	Rh4DG151900 Rh6AG190400 Rh6BG193900 Rh6CG179300 Rh6CG193400 Rh6DG171000 Rh6DG185000 Rh7DG191800
rosa_wichuraiana	Rw0G020450 Rw1G038810 Rw6G016660 Rw7G013720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	158
AciI	CCGC	3 cut(s)	25, 239, 337
AcoI	YGGCCR	1 cut(s)	250
AcsI	RAATTY	1 cut(s)	174
AcuI	CTGAAG	1 cut(s)	390
AfaI	GTAC	2 cut(s)	61, 553
AfiI	CCNNNNNNNGG	1 cut(s)	230
AgsI	TTSAA	4 cut(s)	169, 494, 662, 693
AjnI	CCWGG	2 cut(s)	50, 252
AluBI	AGCT	6 cut(s)	74, 116, 284, 404, 566, 688
AluI	AGCT	6 cut(s)	74, 116, 284, 404, 566, 688
AlwNI	CAGNNNCTG	1 cut(s)	248
AoxI	GGCC	4 cut(s)	22, 35, 250, 318
ApeKI	GCWGC	5 cut(s)	113, 125, 242, 284, 350
ApoI	RAATTY	1 cut(s)	174
Asp700I	GAANNNNTTC	1 cut(s)	403
AspLEI	GCGC	2 cut(s)	203, 215
AspS9I	GGNCC	1 cut(s)	319
AsuHPI	GGTGA	2 cut(s)	170, 620
BalI	TGGCCA	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	801
BbvI	GCAGC	5 cut(s)	112, 125, 254, 271, 337
BccI	CCATC	3 cut(s)	474, 701, 805
BceAI	ACGGC	1 cut(s)	543
BciT130I	CCWGG	2 cut(s)	52, 254
BfaI	CTAG	2 cut(s)	230, 567
BfoI	RGCGCY	2 cut(s)	204, 216
BisI	GCNGC	8 cut(s)	25, 114, 126, 240, 243, 285, 337, 351
BlpI	GCTNAGC	1 cut(s)	684
BlsI	GCNGC	8 cut(s)	26, 115, 127, 241, 244, 286, 338, 352
Bme1390I	CCNGG	2 cut(s)	52, 254
BmgT120I	GGNCC	1 cut(s)	319
BmiI	GGNNCC	1 cut(s)	795
BmrFI	CCNGG	2 cut(s)	52, 254
BmrI	ACTGGG	1 cut(s)	176
BmsI	GCATC	3 cut(s)	254, 373, 751
BmuI	ACTGGG	1 cut(s)	176
BpiI	GAAGAC	1 cut(s)	801
BpmI	CTGGAG	1 cut(s)	375
Bpu1102I	GCTNAGC	1 cut(s)	684
BsaJI	CCNNGG	1 cut(s)	51
BsaWI	WCCGGW	1 cut(s)	790
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse1I	ACTGG	1 cut(s)	182
Bse3DI	GCAATG	3 cut(s)	276, 346, 656
BseBI	CCWGG	2 cut(s)	52, 254
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	4 cut(s)	372, 485, 579, 717
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseMI	GCAATG	3 cut(s)	276, 346, 656
BseMII	CTCAG	1 cut(s)	675
BseNI	ACTGG	1 cut(s)	182
BseXI	GCAGC	5 cut(s)	112, 125, 254, 271, 337
BseYI	CCCAGC	1 cut(s)	280
BshFI	GGCC	4 cut(s)	24, 37, 252, 320
BsiSI	CCGG	1 cut(s)	791
BsiWI	CGTACG	1 cut(s)	551
BslI	CCNNNNNNNGG	1 cut(s)	230
BsmI	GAATGC	1 cut(s)	149
BsnI	GGCC	4 cut(s)	24, 37, 252, 320
Bsp1720I	GCTNAGC	1 cut(s)	684
BspACI	CCGC	3 cut(s)	25, 239, 337
BspANI	GGCC	4 cut(s)	24, 37, 252, 320
BspCNI	CTCAG	1 cut(s)	676
BspHI	TCATGA	1 cut(s)	812
BspLI	GGNNCC	1 cut(s)	795
BsrDI	GCAATG	3 cut(s)	276, 346, 656
BsrI	ACTGG	1 cut(s)	182
BssECI	CCNNGG	1 cut(s)	51
BssNAI	GTATAC	1 cut(s)	159
Bst1107I	GTATAC	1 cut(s)	159
Bst2UI	CCWGG	2 cut(s)	52, 254
Bst4CI	ACNGT	2 cut(s)	551, 632
Bst6I	CTCTTC	1 cut(s)	657
BstAPI	GCANNNNNTGC	2 cut(s)	62, 521
BstC8I	GCNNGC	4 cut(s)	76, 94, 111, 586
BstDEI	CTNAG	1 cut(s)	684
BstF5I	GGATG	4 cut(s)	372, 485, 579, 717
BstH2I	RGCGCY	2 cut(s)	204, 216
BstHHI	GCGC	2 cut(s)	203, 215
BstMWI	GCNNNNNNNGC	9 cut(s)	62, 71, 80, 89, 98, 122, 410, 521, 770
BstNI	CCWGG	2 cut(s)	52, 254
BstNSI	RCATGY	1 cut(s)	60
BstSCI	CCNGG	2 cut(s)	50, 252
BstV1I	GCAGC	5 cut(s)	112, 125, 254, 271, 337
BstV2I	GAAGAC	1 cut(s)	801
BstZ17I	GTATAC	1 cut(s)	159
BsuRI	GGCC	4 cut(s)	24, 37, 252, 320
BtgZI	GCGATG	1 cut(s)	728
BtsCI	GGATG	4 cut(s)	372, 485, 579, 717
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	2 cut(s)	78, 414
Cac8I	GCNNGC	4 cut(s)	76, 94, 111, 586
CaiI	CAGNNNCTG	1 cut(s)	248
CciI	TCATGA	1 cut(s)	812
CfoI	GCGC	2 cut(s)	203, 215
Cfr13I	GGNCC	1 cut(s)	319
Csp6I	GTAC	2 cut(s)	60, 552
CviAII	CATG	4 cut(s)	41, 57, 192, 813
CviQI	GTAC	2 cut(s)	60, 552
DdeI	CTNAG	1 cut(s)	684
EaeI	YGGCCR	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	657
EarI	CTCTTC	1 cut(s)	657
Eco147I	AGGCCT	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	390
EcoRII	CCWGG	2 cut(s)	50, 252
EcoT22I	ATGCAT	1 cut(s)	151
FaeI	CATG	4 cut(s)	44, 60, 195, 816
FalI	AAGNNNNNCTT	2 cut(s)	388, 420
FatI	CATG	4 cut(s)	40, 56, 191, 812
FauNDI	CATATG	3 cut(s)	457, 760, 802
FblI	GTMKAC	1 cut(s)	158
Fnu4HI	GCNGC	8 cut(s)	25, 114, 126, 240, 243, 285, 337, 351
FokI	GGATG	4 cut(s)	379, 492, 586, 704
Fsp4HI	GCNGC	8 cut(s)	25, 114, 126, 240, 243, 285, 337, 351
FspBI	CTAG	2 cut(s)	230, 567
GlaI	GCGC	2 cut(s)	202, 214
GluI	GCNGC	8 cut(s)	25, 114, 126, 240, 243, 285, 337, 351
GsaI	CCCAGC	1 cut(s)	284
GsuI	CTGGAG	1 cut(s)	375
HaeII	RGCGCY	2 cut(s)	204, 216
HaeIII	GGCC	4 cut(s)	24, 37, 252, 320
HapII	CCGG	1 cut(s)	791
HhaI	GCGC	2 cut(s)	203, 215
Hin1II	CATG	4 cut(s)	44, 60, 195, 816
Hin6I	GCGC	2 cut(s)	201, 213
HinP1I	GCGC	2 cut(s)	201, 213
HinfI	GANTC	3 cut(s)	274, 494, 619
HpaII	CCGG	1 cut(s)	791
HphI	GGTGA	2 cut(s)	170, 620
Hpy166II	GTNNAC	2 cut(s)	159, 671
Hpy188I	TCNGA	1 cut(s)	640
Hpy188III	TCNNGA	3 cut(s)	477, 721, 813
Hpy8I	GTNNAC	2 cut(s)	159, 671
HpyAV	CCTTC	3 cut(s)	27, 599, 797
HpyCH4III	ACNGT	2 cut(s)	551, 632
HpyCH4V	TGCA	7 cut(s)	4, 44, 149, 269, 326, 524, 773
HpyF10VI	GCNNNNNNNGC	9 cut(s)	62, 71, 80, 89, 98, 122, 410, 521, 770
HpyF3I	CTNAG	1 cut(s)	684
Hsp92II	CATG	4 cut(s)	44, 60, 195, 816
HspAI	GCGC	2 cut(s)	201, 213
Lsp1109I	GCAGC	5 cut(s)	112, 125, 254, 271, 337
LweI	GCATC	3 cut(s)	254, 373, 751
MaeI	CTAG	2 cut(s)	230, 567
MaeIII	GTNAC	1 cut(s)	469
MboII	GAAGA	3 cut(s)	590, 674, 801
MlsI	TGGCCA	1 cut(s)	252
MluCI	AATT	3 cut(s)	133, 174, 421
MluNI	TGGCCA	1 cut(s)	252
MnlI	CCTC	6 cut(s)	27, 48, 318, 350, 564, 709
Mox20I	TGGCCA	1 cut(s)	252
Mph1103I	ATGCAT	1 cut(s)	151
MroXI	GAANNNNTTC	1 cut(s)	403
MscI	TGGCCA	1 cut(s)	252
MseI	TTAA	3 cut(s)	137, 416, 734
MslI	CAYNNNNRTG	1 cut(s)	331
Msp20I	TGGCCA	1 cut(s)	252
MspA1I	CMGCKG	2 cut(s)	116, 284
MspI	CCGG	1 cut(s)	791
MspR9I	CCNGG	2 cut(s)	52, 254
Mva1269I	GAATGC	1 cut(s)	149
MvaI	CCWGG	2 cut(s)	52, 254
MwoI	GCNNNNNNNGC	9 cut(s)	62, 71, 80, 89, 98, 122, 410, 521, 770
NdeI	CATATG	3 cut(s)	457, 760, 802
NlaIII	CATG	4 cut(s)	44, 60, 195, 816
NlaIV	GGNNCC	1 cut(s)	795
NmuCI	GTSAC	1 cut(s)	469
NsiI	ATGCAT	1 cut(s)	151
NspI	RCATGY	1 cut(s)	60
PagI	TCATGA	1 cut(s)	812
PceI	AGGCCT	1 cut(s)	37
PctI	GAATGC	1 cut(s)	149
PdmI	GAANNNNTTC	1 cut(s)	403
PfeI	GAWTC	3 cut(s)	274, 494, 619
Pfl23II	CGTACG	1 cut(s)	551
PkrI	GCNGC	8 cut(s)	26, 115, 127, 241, 244, 286, 338, 352
Psp6I	CCWGG	2 cut(s)	50, 252
PspFI	CCCAGC	1 cut(s)	280
PspGI	CCWGG	2 cut(s)	50, 252
PspLI	CGTACG	1 cut(s)	551
PspN4I	GGNNCC	1 cut(s)	795
PspPI	GGNCC	1 cut(s)	319
PstNI	CAGNNNCTG	1 cut(s)	248
PvuII	CAGCTG	2 cut(s)	116, 284
RsaI	GTAC	2 cut(s)	61, 553
RsaNI	GTAC	2 cut(s)	60, 552
RseI	CAYNNNNRTG	1 cut(s)	331
SaqAI	TTAA	3 cut(s)	137, 416, 734
SatI	GCNGC	8 cut(s)	25, 114, 126, 240, 243, 285, 337, 351
Sau96I	GGNCC	1 cut(s)	319
ScrFI	CCNGG	2 cut(s)	52, 254
SfaNI	GCATC	3 cut(s)	254, 373, 751
SmiMI	CAYNNNNRTG	1 cut(s)	331
Sse9I	AATT	3 cut(s)	133, 174, 421
SseBI	AGGCCT	1 cut(s)	37
SsiI	CCGC	3 cut(s)	25, 239, 337
SspMI	CTAG	2 cut(s)	230, 567
StuI	AGGCCT	1 cut(s)	37
StyD4I	CCNGG	2 cut(s)	50, 252
TaaI	ACNGT	2 cut(s)	551, 632
TasI	AATT	3 cut(s)	133, 174, 421
TatI	WGTACW	1 cut(s)	59
TauI	GCSGC	3 cut(s)	27, 242, 339
TfiI	GAWTC	3 cut(s)	274, 494, 619
Tru1I	TTAA	3 cut(s)	137, 416, 734
Tru9I	TTAA	3 cut(s)	137, 416, 734
TscAI	CASTG	2 cut(s)	85, 414
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	5 cut(s)	113, 125, 242, 284, 350
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	2 cut(s)	525, 801
TspRI	CASTG	2 cut(s)	85, 414
XapI	RAATTY	1 cut(s)	174
XceI	RCATGY	1 cut(s)	60
XcmI	CCANNNNNNNNNTGG	2 cut(s)	189, 231
XmiI	GTMKAC	1 cut(s)	158
XmnI	GAANNNNTTC	1 cut(s)	403
XspI	CTAG	2 cut(s)	230, 567
Zsp2I	ATGCAT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.