Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002645

Physical Location & Seq

Genomic Coordinates Forward (+)

29685469 .. 29686870

Gene Structure 1402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24326

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGCTAGTTGCTGCAACTTCTGGAACTGGATTTGTTCTTGGAAGTGGCAGTGCCGTCGATTTTGCTGGACTTTGTTGGATATGTGTTGGTACCATGATGTTTGCAGCATCTGCTAACTCTTTAAATCAGGTGTTCGAGAAGTATAATGATGCCAAACTGAAGAGAACGATGCAAAGACCCCTACCTTCAGGACGCATTACTAGGCCTCATGCAATTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0015980 GO:0016740 GO:0016765 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00190 ko00860 ko01100 ko01110 ko04714 map00190 map00860 map01100 map01110 map04714

Pfam Domains

Protein Families

UbiA

Protein Analysis

73

Amino Acids

7.73

Weight (kDa)

9.69

Isoelectric Point (pI)

13.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UbiA	PF01040	6 - 72	1.6e-15	UbiA prenyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44520
fragaria_vesca	FvH4_2g12720 FvH4_2g12720
malus_domestica	MD08G1235300.v1.1 MD15G1426600.v1.1
prunus_persica	Prupe.1G571600_v2.0.a1
pyrus_communis	pycom08g20360 pycom15g37750 pycom15g37820 pycom15g37850
rosa_chinensis	RchiOBHm_Chr6g0271171 RchiOBHm_Chr6g0273481 RchiOBHm_Chr7g0200821
rosa_laevigata	RLG00000007702 RLG00000013613 RLG00000030224
rosa_multiflora	Rmu_sc0000367.1_g000112 Rmu_sc0004127.1_g000003 Rmu_sc0005891.1_g000033 Rmu_sc0010380.1_g000010 Rmu_sc0010380.1_g000011
rosa_roxburghii	Rroxscaffold_166G00440760 Rroxscaffold_4G00302880 Rroxscaffold_6G00423080 Rroxscaffold_7G00195280
rosa_rugosa	Rorug03G0044000 Rorug06G0075700 Rorug06G0075800
rosa_samantha	Rh4DG151900 Rh6AG190400 Rh6BG193900 Rh6CG179300 Rh6CG193400 Rh6DG171000 Rh6DG185000 Rh7DG191800
rosa_wichuraiana	Rw0G020450 Rw1G038810 Rw6G016660 Rw7G013720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	89
AccB1I	GGYRCC	1 cut(s)	89
AcuI	CTGAAG	2 cut(s)	171, 179
AfaI	GTAC	1 cut(s)	91
AlwNI	CAGNNNCTG	1 cut(s)	110
AoxI	GGCC	1 cut(s)	203
ApeKI	GCWGC	2 cut(s)	11, 104
Asp718I	GGTACC	1 cut(s)	89
BanI	GGYRCC	1 cut(s)	89
BbvI	GCAGC	1 cut(s)	116
BceAI	ACGGC	1 cut(s)	38
BcgI	CGANNNNNNTGC	2 cut(s)	37, 71
BfaI	CTAG	3 cut(s)	5, 201, 220
BisI	GCNGC	2 cut(s)	12, 105
BlsI	GCNGC	2 cut(s)	13, 106
BmiI	GGNNCC	1 cut(s)	91
BmsI	GCATC	3 cut(s)	116, 139, 159
Bse1I	ACTGG	1 cut(s)	31
BseNI	ACTGG	1 cut(s)	31
BseXI	GCAGC	1 cut(s)	116
BshFI	GGCC	1 cut(s)	205
BshNI	GGYRCC	1 cut(s)	89
BsnI	GGCC	1 cut(s)	205
BspANI	GGCC	1 cut(s)	205
BspLI	GGNNCC	1 cut(s)	91
BspT107I	GGYRCC	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	31
Bst6I	CTCTTC	1 cut(s)	155
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstV1I	GCAGC	1 cut(s)	116
BsuRI	GGCC	1 cut(s)	205
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	55
CaiI	CAGNNNCTG	1 cut(s)	110
CseI	GACGC	1 cut(s)	201
Csp6I	GTAC	1 cut(s)	90
CviAII	CATG	2 cut(s)	94, 209
CviJI	RGCY	1 cut(s)	205
CviKI_1	RGCY	1 cut(s)	205
CviQI	GTAC	1 cut(s)	90
DraI	TTTAAA	1 cut(s)	123
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco147I	AGGCCT	1 cut(s)	205
Eco57I	CTGAAG	2 cut(s)	171, 179
FaeI	CATG	2 cut(s)	97, 212
FaiI	YATR	4 cut(s)	82, 95, 144, 210
FatI	CATG	2 cut(s)	93, 208
Fnu4HI	GCNGC	2 cut(s)	12, 105
Fsp4HI	GCNGC	2 cut(s)	12, 105
FspBI	CTAG	3 cut(s)	5, 201, 220
GluI	GCNGC	2 cut(s)	12, 105
HaeIII	GGCC	1 cut(s)	205
HgaI	GACGC	1 cut(s)	201
Hin1II	CATG	2 cut(s)	97, 212
Hpy188III	TCNNGA	3 cut(s)	21, 136, 189
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	1 cut(s)	195
HpyCH4V	TGCA	4 cut(s)	14, 104, 172, 212
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
Hsp92II	CATG	2 cut(s)	97, 212
KpnI	GGTACC	1 cut(s)	93
LpnPI	CCDG	5 cut(s)	6, 12, 51, 113, 174
Lsp1109I	GCAGC	1 cut(s)	116
LweI	GCATC	3 cut(s)	116, 139, 159
MaeI	CTAG	3 cut(s)	5, 201, 220
MboII	GAAGA	1 cut(s)	172
MfeI	CAATTG	1 cut(s)	213
MluCI	AATT	1 cut(s)	213
MmeI	TCCRAC	1 cut(s)	56
MnlI	CCTC	1 cut(s)	216
MseI	TTAA	1 cut(s)	122
MunI	CAATTG	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	110
NlaIII	CATG	2 cut(s)	97, 212
NlaIV	GGNNCC	1 cut(s)	91
PceI	AGGCCT	1 cut(s)	205
PkrI	GCNGC	2 cut(s)	13, 106
PspN4I	GGNNCC	1 cut(s)	91
PstNI	CAGNNNCTG	1 cut(s)	110
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	122
SatI	GCNGC	2 cut(s)	12, 105
SetI	ASST	2 cut(s)	132, 187
SfaNI	GCATC	3 cut(s)	116, 139, 159
Sse9I	AATT	1 cut(s)	213
SseBI	AGGCCT	1 cut(s)	205
SspMI	CTAG	3 cut(s)	5, 201, 220
StuI	AGGCCT	1 cut(s)	205
TaqI	TCGA	2 cut(s)	57, 135
TasI	AATT	1 cut(s)	213
Tru1I	TTAA	1 cut(s)	122
Tru9I	TTAA	1 cut(s)	122
TscAI	CASTG	1 cut(s)	55
TseI	GCWGC	2 cut(s)	11, 104
TspRI	CASTG	1 cut(s)	55
XspI	CTAG	3 cut(s)	5, 201, 220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.