Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004127.1

Orthogroup ID

OG0002645

Physical Location & Seq

Genomic Coordinates Reverse (-)

24620 .. 25335

Gene Structure 716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004127.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

atgcaaagacccctaccttcaagacgcattactaggcctcatgcaattgcctgggcatttactgctggcttagttggcactgctttgttggcaagcaaggctaatatgctggcagctggtcttgatgcttccaatttaatactttatgcatttctgtatactccattaaagcaaattcacccagtaaatacatgggttggcgctgttgttggtgctatcccaccacttctagggttgggtactgacgggattgttaacatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0015980 GO:0016740 GO:0016765 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00190 ko00860 ko01100 ko01110 ko04714 map00190 map00860 map01100 map01110 map04714

Pfam Domains

Protein Families

UbiA

Protein Analysis

87

Amino Acids

9.16

Weight (kDa)

10.42

Isoelectric Point (pI)

28.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44520
fragaria_vesca	FvH4_2g12720 FvH4_2g12720
malus_domestica	MD08G1235300.v1.1 MD15G1426600.v1.1
prunus_persica	Prupe.1G571600_v2.0.a1
pyrus_communis	pycom08g20360 pycom15g37750 pycom15g37820 pycom15g37850
rosa_chinensis	RchiOBHm_Chr6g0271171 RchiOBHm_Chr6g0273481 RchiOBHm_Chr7g0200821
rosa_laevigata	RLG00000007702 RLG00000013613 RLG00000030224
rosa_multiflora	Rmu_sc0000367.1_g000112 Rmu_sc0004127.1_g000003 Rmu_sc0005891.1_g000033 Rmu_sc0010380.1_g000010 Rmu_sc0010380.1_g000011
rosa_roxburghii	Rroxscaffold_166G00440760 Rroxscaffold_4G00302880 Rroxscaffold_6G00423080 Rroxscaffold_7G00195280
rosa_rugosa	Rorug03G0044000 Rorug06G0075700 Rorug06G0075800
rosa_samantha	Rh4DG151900 Rh6AG190400 Rh6BG193900 Rh6CG179300 Rh6CG193400 Rh6DG171000 Rh6DG185000 Rh7DG191800
rosa_wichuraiana	Rw0G020450 Rw1G038810 Rw6G016660 Rw7G013720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	158
AcsI	RAATTY	1 cut(s)	174
AfaI	GTAC	1 cut(s)	241
AfiI	CCNNNNNNNGG	1 cut(s)	230
AgsI	TTSAA	1 cut(s)	21
AjnI	CCWGG	1 cut(s)	50
AluBI	AGCT	1 cut(s)	116
AluI	AGCT	1 cut(s)	116
AoxI	GGCC	1 cut(s)	35
ApeKI	GCWGC	1 cut(s)	113
ApoI	RAATTY	1 cut(s)	174
AspLEI	GCGC	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	170
BbvI	GCAGC	1 cut(s)	125
BciT130I	CCWGG	1 cut(s)	52
BfaI	CTAG	2 cut(s)	33, 230
BfoI	RGCGCY	1 cut(s)	204
BisI	GCNGC	1 cut(s)	114
BlsI	GCNGC	1 cut(s)	115
Bme1390I	CCNGG	1 cut(s)	52
BmrFI	CCNGG	1 cut(s)	52
BmrI	ACTGGG	1 cut(s)	176
BmsI	GCATC	1 cut(s)	115
BmuI	ACTGGG	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse1I	ACTGG	1 cut(s)	182
BseBI	CCWGG	1 cut(s)	52
BseDI	CCNNGG	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseNI	ACTGG	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	125
BshFI	GGCC	1 cut(s)	37
BslI	CCNNNNNNNGG	1 cut(s)	230
BsnI	GGCC	1 cut(s)	37
BspANI	GGCC	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	182
BssECI	CCNNGG	1 cut(s)	51
BssNAI	GTATAC	1 cut(s)	159
Bst1107I	GTATAC	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	52
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstC8I	GCNNGC	3 cut(s)	67, 94, 111
BstDEI	CTNAG	1 cut(s)	70
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	203
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 75, 89, 98
BstNI	CCWGG	1 cut(s)	52
BstSCI	CCNGG	1 cut(s)	50
BstV1I	GCAGC	1 cut(s)	125
BstZ17I	GTATAC	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	37
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	3 cut(s)	67, 94, 111
CfoI	GCGC	1 cut(s)	203
CseI	GACGC	1 cut(s)	33
Csp6I	GTAC	1 cut(s)	240
CviAII	CATG	2 cut(s)	41, 192
CviJI	RGCY	4 cut(s)	37, 69, 101, 116
CviKI_1	RGCY	4 cut(s)	37, 69, 101, 116
CviQI	GTAC	1 cut(s)	240
DdeI	CTNAG	1 cut(s)	70
Eco147I	AGGCCT	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	50
EcoT22I	ATGCAT	1 cut(s)	151
FaeI	CATG	2 cut(s)	44, 195
FaiI	YATR	5 cut(s)	42, 107, 147, 159, 193
FatI	CATG	2 cut(s)	40, 191
FblI	GTMKAC	1 cut(s)	158
Fnu4HI	GCNGC	1 cut(s)	114
Fsp4HI	GCNGC	1 cut(s)	114
FspBI	CTAG	2 cut(s)	33, 230
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	1 cut(s)	114
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	1 cut(s)	37
HgaI	GACGC	1 cut(s)	33
HhaI	GCGC	1 cut(s)	203
Hin1II	CATG	2 cut(s)	44, 195
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HpaI	GTTAAC	1 cut(s)	256
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	2 cut(s)	159, 256
Hpy188I	TCNGA	1 cut(s)	263
Hpy188III	TCNNGA	2 cut(s)	21, 122
Hpy8I	GTNNAC	2 cut(s)	159, 256
HpyAV	CCTTC	1 cut(s)	27
HpyCH4V	TGCA	3 cut(s)	4, 44, 149
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 75, 89, 98
HpyF3I	CTNAG	1 cut(s)	70
Hsp92II	CATG	2 cut(s)	44, 195
HspAI	GCGC	1 cut(s)	201
KspAI	GTTAAC	1 cut(s)	256
LpnPI	CCDG	6 cut(s)	37, 51, 64, 95, 102, 195
Lsp1109I	GCAGC	1 cut(s)	125
LweI	GCATC	1 cut(s)	115
MaeI	CTAG	2 cut(s)	33, 230
MfeI	CAATTG	1 cut(s)	45
MluCI	AATT	3 cut(s)	45, 133, 174
MnlI	CCTC	1 cut(s)	48
Mph1103I	ATGCAT	1 cut(s)	151
MseI	TTAA	3 cut(s)	137, 167, 255
MspA1I	CMGCKG	1 cut(s)	116
MspR9I	CCNGG	1 cut(s)	52
MunI	CAATTG	1 cut(s)	45
MvaI	CCWGG	1 cut(s)	52
MwoI	GCNNNNNNNGC	4 cut(s)	62, 75, 89, 98
NlaIII	CATG	2 cut(s)	44, 195
NsiI	ATGCAT	1 cut(s)	151
PceI	AGGCCT	1 cut(s)	37
PkrI	GCNGC	1 cut(s)	115
Psp6I	CCWGG	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	50
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	1 cut(s)	241
RsaNI	GTAC	1 cut(s)	240
SaqAI	TTAA	3 cut(s)	137, 167, 255
SatI	GCNGC	1 cut(s)	114
ScrFI	CCNGG	1 cut(s)	52
SetI	ASST	2 cut(s)	19, 118
SfaNI	GCATC	1 cut(s)	115
Sse9I	AATT	3 cut(s)	45, 133, 174
SseBI	AGGCCT	1 cut(s)	37
SspMI	CTAG	2 cut(s)	33, 230
StuI	AGGCCT	1 cut(s)	37
StyD4I	CCNGG	1 cut(s)	50
TasI	AATT	3 cut(s)	45, 133, 174
Tru1I	TTAA	3 cut(s)	137, 167, 255
Tru9I	TTAA	3 cut(s)	137, 167, 255
TscAI	CASTG	1 cut(s)	85
TseI	GCWGC	1 cut(s)	113
TspRI	CASTG	1 cut(s)	85
XapI	RAATTY	1 cut(s)	174
XcmI	CCANNNNNNNNNTGG	1 cut(s)	189
XmiI	GTMKAC	1 cut(s)	158
XspI	CTAG	2 cut(s)	33, 230
Zsp2I	ATGCAT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.