Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002645

Physical Location & Seq

Genomic Coordinates Reverse (-)

44000544 .. 44004327

Gene Structure 3784 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00423080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGCTAGTTGCTGCTACTTCTGGAACTGGATTTGTTCTTGGAAGTGGCAGTGCCGTCGATTTTGCTGGACTTTGTTGGATATGTGTTGGTACCATGATGTTTGCAGCATCTGCTAACTCTTTAAATCAGGTGTTCGAGAAGTATAATGATGCCAAACTGAAGAGAACGATGCAAAGACCCCTACCTTCAGGACGCATTACTAGGCCTCATGCAATTGCGGTAGTGGTATCTTCTACACTAGCCTTAAAGGATCATGGATCCATTCCTTCTAGGAAGGGAGGACTTCCTCTTATAGCTAAAGGAAATCCCCATTTAGTGGCCTCACGGCAAGATACCGGCCGAACTCCACCATGGCGAGGTAGCTCGGGTGTCGGTCTACCGGATGCATATTGTAGGCGGGACCTACCATGTCGCGGGGCCTACCTACGAGGTTGTTGCTTATGCTTGGCGGTATGTAATATAGGCGGTATGTACAAGTCCACCAAGTCCCGCAGTAAGAGGCGCTTCTTGGTTGAGGAGTTTAAATATGATGCCGCCAAGTATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0015980 GO:0016740 GO:0016765 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00190 ko00860 ko01100 ko01110 ko04714 map00190 map00860 map01100 map01110 map04714

Pfam Domains

Protein Families

UbiA

Protein Analysis

182

Amino Acids

19.6

Weight (kDa)

9.84

Isoelectric Point (pI)

37.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UbiA	PF01040	6 - 80	9.9e-16	UbiA prenyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44520
fragaria_vesca	FvH4_2g12720 FvH4_2g12720
malus_domestica	MD08G1235300.v1.1 MD15G1426600.v1.1
prunus_persica	Prupe.1G571600_v2.0.a1
pyrus_communis	pycom08g20360 pycom15g37750 pycom15g37820 pycom15g37850
rosa_chinensis	RchiOBHm_Chr6g0271171 RchiOBHm_Chr6g0273481 RchiOBHm_Chr7g0200821
rosa_laevigata	RLG00000007702 RLG00000013613 RLG00000030224
rosa_multiflora	Rmu_sc0000367.1_g000112 Rmu_sc0004127.1_g000003 Rmu_sc0005891.1_g000033 Rmu_sc0010380.1_g000010 Rmu_sc0010380.1_g000011
rosa_roxburghii	Rroxscaffold_166G00440760 Rroxscaffold_4G00302880 Rroxscaffold_6G00423080 Rroxscaffold_7G00195280
rosa_rugosa	Rorug03G0044000 Rorug06G0075700 Rorug06G0075800
rosa_samantha	Rh4DG151900 Rh6AG190400 Rh6BG193900 Rh6CG179300 Rh6CG193400 Rh6DG171000 Rh6DG185000 Rh7DG191800
rosa_wichuraiana	Rw0G020450 Rw1G038810 Rw6G016660 Rw7G013720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	89
AccB1I	GGYRCC	1 cut(s)	89
AccB7I	CCANNNNNTGG	1 cut(s)	316
AccI	GTMKAC	1 cut(s)	376
AccII	CGCG	1 cut(s)	414
AciI	CCGC	7 cut(s)	218, 397, 414, 449, 465, 490, 534
AclWI	GGATC	3 cut(s)	252, 258, 265
AcoI	YGGCCR	1 cut(s)	337
AcuI	CTGAAG	2 cut(s)	171, 179
AfaI	GTAC	2 cut(s)	91, 473
AfiI	CCNNNNNNNGG	3 cut(s)	316, 356, 413
AluBI	AGCT	2 cut(s)	296, 363
AluI	AGCT	2 cut(s)	296, 363
AlwI	GGATC	3 cut(s)	252, 258, 265
AlwNI	CAGNNNCTG	1 cut(s)	110
Ama87I	CYCGRG	1 cut(s)	364
AoxI	GGCC	4 cut(s)	203, 318, 337, 417
ApeKI	GCWGC	2 cut(s)	11, 104
Asp718I	GGTACC	1 cut(s)	89
AspLEI	GCGC	1 cut(s)	504
AspS9I	GGNCC	2 cut(s)	400, 417
AvaI	CYCGRG	1 cut(s)	364
AvaII	GGWCC	1 cut(s)	400
BamHI	GGATCC	1 cut(s)	257
BanI	GGYRCC	1 cut(s)	89
BbvI	GCAGC	1 cut(s)	116
BceAI	ACGGC	2 cut(s)	38, 341
BcgI	CGANNNNNNTGC	4 cut(s)	37, 71, 417, 451
BfaI	CTAG	4 cut(s)	5, 201, 239, 270
BfoI	RGCGCY	1 cut(s)	505
BisI	GCNGC	3 cut(s)	12, 105, 534
BlsI	GCNGC	3 cut(s)	13, 106, 535
Bme18I	GGWCC	1 cut(s)	400
BmeT110I	CYCGRG	1 cut(s)	364
BmgT120I	GGNCC	2 cut(s)	400, 417
BmiI	GGNNCC	4 cut(s)	91, 259, 401, 418
BmsI	GCATC	5 cut(s)	116, 139, 159, 373, 520
BsaJI	CCNNGG	1 cut(s)	350
BsaWI	WCCGGW	1 cut(s)	379
Bsc4I	CCNNNNNNNGG	3 cut(s)	316, 356, 413
Bse118I	RCCGGY	1 cut(s)	335
Bse1I	ACTGG	1 cut(s)	31
BseDI	CCNNGG	1 cut(s)	350
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	3 cut(s)	316, 356, 413
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	1 cut(s)	530
BseX3I	CGGCCG	1 cut(s)	337
BseXI	GCAGC	1 cut(s)	116
Bsh1236I	CGCG	1 cut(s)	414
Bsh1285I	CGRYCG	1 cut(s)	340
BshFI	GGCC	4 cut(s)	205, 320, 339, 419
BshNI	GGYRCC	1 cut(s)	89
BsiEI	CGRYCG	1 cut(s)	340
BsiHKCI	CYCGRG	1 cut(s)	364
BsiSI	CCGG	2 cut(s)	336, 380
BslFI	GGGAC	2 cut(s)	413, 472
BslI	CCNNNNNNNGG	3 cut(s)	316, 356, 413
BsmFI	GGGAC	2 cut(s)	413, 472
BsnI	GGCC	4 cut(s)	205, 320, 339, 419
BsoBI	CYCGRG	1 cut(s)	364
Bsp1407I	TGTACA	1 cut(s)	471
Bsp143I	GATC	2 cut(s)	250, 257
Bsp19I	CCATGG	1 cut(s)	350
BspACI	CCGC	7 cut(s)	218, 397, 414, 449, 465, 490, 534
BspANI	GGCC	4 cut(s)	205, 320, 339, 419
BspFNI	CGCG	1 cut(s)	414
BspLI	GGNNCC	4 cut(s)	91, 259, 401, 418
BspPI	GGATC	3 cut(s)	252, 258, 265
BspT107I	GGYRCC	1 cut(s)	89
BsrFI	RCCGGY	1 cut(s)	335
BsrGI	TGTACA	1 cut(s)	471
BsrI	ACTGG	1 cut(s)	31
BssAI	RCCGGY	1 cut(s)	335
BssECI	CCNNGG	1 cut(s)	350
BssMI	GATC	2 cut(s)	250, 257
BssT1I	CCWWGG	1 cut(s)	350
Bst6I	CTCTTC	1 cut(s)	155
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstAUI	TGTACA	1 cut(s)	471
BstDSI	CCRYGG	1 cut(s)	350
BstF5I	GGATG	1 cut(s)	388
BstFNI	CGCG	1 cut(s)	414
BstH2I	RGCGCY	1 cut(s)	505
BstHHI	GCGC	1 cut(s)	504
BstKTI	GATC	2 cut(s)	253, 260
BstMBI	GATC	2 cut(s)	250, 257
BstMCI	CGRYCG	1 cut(s)	340
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstUI	CGCG	1 cut(s)	414
BstV1I	GCAGC	1 cut(s)	116
BstX2I	RGATCY	1 cut(s)	257
BstYI	RGATCY	1 cut(s)	257
BstZI	CGGCCG	1 cut(s)	337
BsuRI	GGCC	4 cut(s)	205, 320, 339, 419
BtgI	CCRYGG	1 cut(s)	350
BtsCI	GGATG	1 cut(s)	388
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	55
CaiI	CAGNNNCTG	1 cut(s)	110
CfoI	GCGC	1 cut(s)	504
Cfr10I	RCCGGY	1 cut(s)	335
Cfr13I	GGNCC	2 cut(s)	400, 417
CseI	GACGC	1 cut(s)	201
Csp6I	GTAC	2 cut(s)	90, 472
CviAII	CATG	5 cut(s)	94, 209, 254, 351, 408
CviJI	RGCY	7 cut(s)	205, 242, 296, 320, 339, 363, 419
CviKI_1	RGCY	7 cut(s)	205, 242, 296, 320, 339, 363, 419
CviQI	GTAC	2 cut(s)	90, 472
DpnI	GATC	2 cut(s)	252, 259
DpnII	GATC	2 cut(s)	250, 257
DraI	TTTAAA	2 cut(s)	123, 523
EaeI	YGGCCR	1 cut(s)	337
EagI	CGGCCG	1 cut(s)	337
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
EclXI	CGGCCG	1 cut(s)	337
Eco130I	CCWWGG	1 cut(s)	350
Eco147I	AGGCCT	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	400
Eco52I	CGGCCG	1 cut(s)	337
Eco57I	CTGAAG	2 cut(s)	171, 179
Eco88I	CYCGRG	1 cut(s)	364
EcoO109I	RGGNCCY	2 cut(s)	400, 417
EcoT14I	CCWWGG	1 cut(s)	350
EcoT22I	ATGCAT	1 cut(s)	388
ErhI	CCWWGG	1 cut(s)	350
FaeI	CATG	5 cut(s)	97, 212, 257, 354, 411
FalI	AAGNNNNNCTT	2 cut(s)	488, 520
FaqI	GGGAC	2 cut(s)	413, 472
FatI	CATG	5 cut(s)	93, 208, 253, 350, 407
FauI	CCCGC	3 cut(s)	390, 407, 497
FblI	GTMKAC	1 cut(s)	376
Fnu4HI	GCNGC	3 cut(s)	12, 105, 534
FokI	GGATG	1 cut(s)	395
Fsp4HI	GCNGC	3 cut(s)	12, 105, 534
FspBI	CTAG	4 cut(s)	5, 201, 239, 270
GlaI	GCGC	1 cut(s)	503
GluI	GCNGC	3 cut(s)	12, 105, 534
HaeII	RGCGCY	1 cut(s)	505
HaeIII	GGCC	4 cut(s)	205, 320, 339, 419
HapII	CCGG	2 cut(s)	336, 380
HgaI	GACGC	1 cut(s)	201
HhaI	GCGC	1 cut(s)	504
Hin1II	CATG	5 cut(s)	97, 212, 257, 354, 411
Hin6I	GCGC	1 cut(s)	502
HinP1I	GCGC	1 cut(s)	502
HpaII	CCGG	2 cut(s)	336, 380
Hpy166II	GTNNAC	2 cut(s)	377, 480
Hpy188III	TCNNGA	3 cut(s)	21, 136, 189
Hpy8I	GTNNAC	2 cut(s)	377, 480
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	3 cut(s)	195, 268, 276
HpyCH4V	TGCA	4 cut(s)	104, 172, 212, 386
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
Hsp92II	CATG	5 cut(s)	97, 212, 257, 354, 411
HspAI	GCGC	1 cut(s)	502
KpnI	GGTACC	1 cut(s)	93
Kzo9I	GATC	2 cut(s)	250, 257
LpnPI	CCDG	7 cut(s)	6, 12, 51, 113, 174, 349, 393
Lsp1109I	GCAGC	1 cut(s)	116
LweI	GCATC	5 cut(s)	116, 139, 159, 373, 520
MaeI	CTAG	4 cut(s)	5, 201, 239, 270
MalI	GATC	2 cut(s)	252, 259
MboI	GATC	2 cut(s)	250, 257
MboII	GAAGA	2 cut(s)	172, 222
MfeI	CAATTG	1 cut(s)	213
MflI	RGATCY	1 cut(s)	257
MluCI	AATT	1 cut(s)	213
MmeI	TCCRAC	1 cut(s)	56
MnlI	CCTC	8 cut(s)	216, 272, 297, 331, 350, 422, 492, 508
Mph1103I	ATGCAT	1 cut(s)	388
MseI	TTAA	3 cut(s)	122, 245, 522
MspI	CCGG	2 cut(s)	336, 380
MunI	CAATTG	1 cut(s)	213
MvnI	CGCG	1 cut(s)	414
MwoI	GCNNNNNNNGC	1 cut(s)	110
NcoI	CCATGG	1 cut(s)	350
NdeII	GATC	2 cut(s)	250, 257
NlaIII	CATG	5 cut(s)	97, 212, 257, 354, 411
NlaIV	GGNNCC	4 cut(s)	91, 259, 401, 418
NsiI	ATGCAT	1 cut(s)	388
PceI	AGGCCT	1 cut(s)	205
PflMI	CCANNNNNTGG	1 cut(s)	316
PkrI	GCNGC	3 cut(s)	13, 106, 535
PpuMI	RGGWCCY	1 cut(s)	400
Psp5II	RGGWCCY	1 cut(s)	400
PspN4I	GGNNCC	4 cut(s)	91, 259, 401, 418
PspPI	GGNCC	2 cut(s)	400, 417
PspPPI	RGGWCCY	1 cut(s)	400
PstNI	CAGNNNCTG	1 cut(s)	110
PsuI	RGATCY	1 cut(s)	257
RsaI	GTAC	2 cut(s)	91, 473
RsaNI	GTAC	2 cut(s)	90, 472
SaqAI	TTAA	3 cut(s)	122, 245, 522
SatI	GCNGC	3 cut(s)	12, 105, 534
Sau3AI	GATC	2 cut(s)	250, 257
Sau96I	GGNCC	2 cut(s)	400, 417
SetI	ASST	8 cut(s)	132, 187, 298, 361, 365, 405, 426, 433
SfaNI	GCATC	5 cut(s)	116, 139, 159, 373, 520
SinI	GGWCC	1 cut(s)	400
Sse9I	AATT	1 cut(s)	213
SseBI	AGGCCT	1 cut(s)	205
SsiI	CCGC	7 cut(s)	218, 397, 414, 449, 465, 490, 534
SspMI	CTAG	4 cut(s)	5, 201, 239, 270
StuI	AGGCCT	1 cut(s)	205
StyI	CCWWGG	1 cut(s)	350
TaqI	TCGA	2 cut(s)	57, 135
TaqII	GACCGA	1 cut(s)	362
TasI	AATT	1 cut(s)	213
TatI	WGTACW	1 cut(s)	471
TauI	GCSGC	1 cut(s)	536
Tru1I	TTAA	3 cut(s)	122, 245, 522
Tru9I	TTAA	3 cut(s)	122, 245, 522
TscAI	CASTG	1 cut(s)	55
TseI	GCWGC	2 cut(s)	11, 104
TspRI	CASTG	1 cut(s)	55
Van91I	CCANNNNNTGG	1 cut(s)	316
VpaK11BI	GGWCC	1 cut(s)	400
XmiI	GTMKAC	1 cut(s)	376
XspI	CTAG	4 cut(s)	5, 201, 239, 270
Zsp2I	ATGCAT	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.