Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002645

Physical Location & Seq

Genomic Coordinates Reverse (-)

46589085 .. 46594461

Gene Structure 5377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G571600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGTGGAGGAACTCGCTGAGATTCTCGCCCAAGCTCGTAACATCTAACAACTCATTGCACCTCTCTTCCATTTCCTCCTCGGCAGCGAACGACGTCGCTCGACCACCACTGCTCTCTCACTCTTTCTCCCAATCCTACTCTTACTCCCCCTCACCTTCACCTTCACCTTCAGATTCTCTGAAGCTAGGGTTTCAGCGCCCCGATGGATTCCGAGCACTCTCGGCGGCTACTGCTGTTGATCTCGCGTCTGGGGCCTCCAAAGCTTCGTACTGGGCTCGCCACTATGGTCGCTGCTATTGGGAGCTCTCCAAAGCTCGCCTCAGCATGCTAGTTGTTGCAACTTCTGGAACTGGATTTGTTCTTGGAAGTGGCCATGCCATTGATTTTTCTGGACTTTGTTGGACATGTGCTGGTACCATGATGGTTGCAGCATCTGCTAATTCTTTAAATCAGGTGTTTGAGAAGAATAATGATGCCAAAATGAATAGAACGAAGCAAAGACCACTTCCATCGGGACGCATTACGATACCTCATGCAGTCACCTGGGCATCTGCTGCTGGTTTAGCTGGCACTGCTTTGTTGGCAAGCCAGGCTAATATGTTGGCAGCTGGACTTGCAGCTTCAAATTTAATACTTTATGCATTTGTATATACTCCGTTGAAGCAGATTCACCCAGTAAATACATGGGTTGGTGCGGTTGTTGGTGCTATTCCTCCACTTTTAGGTTGGGCTGCAGCTGCTGGCCAGGTTTCCCTCAATGCAATGCTTCTCCCAGCTGCTTTATACTTTTGGCAAATACCTCATTTTATGGCCCTTGCATACTTGTGCCGTAATGACTATGCCGCTGGAGGGTTTAGGATGCTCTCCCTTGCTGATGCTTCTGGTCAGAAAACAGCCTTAGTAGCTTTAAGGAATTGTGTATACCTGATCCCTTTGGGATTCTTGGCCTATGATTGGGGTATGACTTCTGGATGGTTTTGTCTTGAATCTACTCTTCTTACTCTCGCAATAACTGCAACGGCATTTTCGTTCCATCAGGACCGCACTACACATAAAGCTAGGAAGATGTTTCATGCCAGCCTTCTGTATCTTCCTGTATTCATGTCTGGGATTATGTTTCACCGTCTCTCTGATAATCAACAATGCCTTACTGAAGAGAATTCAGAGAGTAGTGTTGAGCTTTCATTGTCCTCACAAGATAGAAATGTCAACTCGAAGAATAAGTTGAGGAATTCCACAGATAGAACACAAGTGCGGCCACCTGTATCATATGCCTCTGTTGCACCATTTCCATTTCTCCCGGTTCCTTCGTATGTTTCTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0015980 GO:0016740 GO:0016765 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00190 ko00860 ko01100 ko01110 ko04714 map00190 map00860 map01100 map01110 map04714

Pfam Domains

Protein Families

UbiA

Protein Analysis

442

Amino Acids

47.66

Weight (kDa)

9.56

Isoelectric Point (pI)

39.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44520
fragaria_vesca	FvH4_2g12720 FvH4_2g12720
malus_domestica	MD08G1235300.v1.1 MD15G1426600.v1.1
prunus_persica	Prupe.1G571600_v2.0.a1
pyrus_communis	pycom08g20360 pycom15g37750 pycom15g37820 pycom15g37850
rosa_chinensis	RchiOBHm_Chr6g0271171 RchiOBHm_Chr6g0273481 RchiOBHm_Chr7g0200821
rosa_laevigata	RLG00000007702 RLG00000013613 RLG00000030224
rosa_multiflora	Rmu_sc0000367.1_g000112 Rmu_sc0004127.1_g000003 Rmu_sc0005891.1_g000033 Rmu_sc0010380.1_g000010 Rmu_sc0010380.1_g000011
rosa_roxburghii	Rroxscaffold_166G00440760 Rroxscaffold_4G00302880 Rroxscaffold_6G00423080 Rroxscaffold_7G00195280
rosa_rugosa	Rorug03G0044000 Rorug06G0075700 Rorug06G0075800
rosa_samantha	Rh4DG151900 Rh6AG190400 Rh6BG193900 Rh6CG179300 Rh6CG193400 Rh6DG171000 Rh6DG185000 Rh7DG191800
rosa_wichuraiana	Rw0G020450 Rw1G038810 Rw6G016660 Rw7G013720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	96
Acc65I	GGTACC	1 cut(s)	413
AccB1I	GGYRCC	1 cut(s)	413
AccI	GTMKAC	1 cut(s)	921
AccII	CGCG	1 cut(s)	245
AciI	CCGC	5 cut(s)	224, 695, 843, 1042, 1255
AclWI	GGATC	1 cut(s)	922
AcoI	YGGCCR	3 cut(s)	370, 742, 1256
AcsI	RAATTY	3 cut(s)	625, 1159, 1231
AcuI	CTGAAG	3 cut(s)	153, 200, 1173
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	2 cut(s)	269, 415
AfiI	CCNNNNNNNGG	3 cut(s)	722, 849, 954
AflIII	ACRYGT	1 cut(s)	404
AgsI	TTSAA	3 cut(s)	624, 661, 986
AjnI	CCWGG	3 cut(s)	542, 588, 744
Alw21I	GWGCWC	2 cut(s)	217, 306
Alw26I	GTCTC	1 cut(s)	1130
AlwI	GGATC	1 cut(s)	922
AlwNI	CAGNNNCTG	2 cut(s)	434, 740
AoxI	GGCC	6 cut(s)	252, 370, 742, 810, 945, 1256
ApoI	RAATTY	3 cut(s)	625, 1159, 1231
Asp718I	GGTACC	1 cut(s)	413
AspLEI	GCGC	1 cut(s)	198
AspS9I	GGNCC	3 cut(s)	252, 811, 1039
AsuC2I	CCSGG	1 cut(s)	1301
AsuHPI	GGTGA	6 cut(s)	144, 150, 156, 532, 662, 1112
AvaII	GGWCC	1 cut(s)	1039
BalI	TGGCCA	2 cut(s)	372, 744
BanI	GGYRCC	1 cut(s)	413
BanII	GRGCYC	2 cut(s)	277, 306
Bbv12I	GWGCWC	2 cut(s)	217, 306
BbvCI	CCTCAGC	1 cut(s)	320
BccI	CCATC	5 cut(s)	197, 415, 517, 966, 1041
BceAI	ACGGC	2 cut(s)	813, 1035
BciT130I	CCWGG	3 cut(s)	544, 590, 746
BcnI	CCSGG	1 cut(s)	1301
BcoDI	GTCTC	1 cut(s)	1130
BfaI	CTAG	3 cut(s)	185, 329, 1059
BfmI	CTRYAG	1 cut(s)	732
BfoI	RGCGCY	1 cut(s)	199
Bme1390I	CCNGG	4 cut(s)	544, 590, 746, 1301
Bme18I	GGWCC	1 cut(s)	1039
BmgT120I	GGNCC	3 cut(s)	252, 811, 1039
BmiI	GGNNCC	3 cut(s)	253, 415, 1305
BmrFI	CCNGG	4 cut(s)	544, 590, 746, 1301
BmrI	ACTGGG	2 cut(s)	280, 668
BmsI	GCATC	5 cut(s)	440, 463, 557, 849, 865
BmuI	ACTGGG	2 cut(s)	280, 668
BpmI	CTGGAG	1 cut(s)	867
Bpu10I	CCTNAGC	1 cut(s)	320
BpuMI	CCSGG	1 cut(s)	1301
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	78, 543
BsaXI	ACNNNNNCTCC	4 cut(s)	110, 128, 140, 158
Bsc4I	CCNNNNNNNGG	3 cut(s)	722, 849, 954
Bse1I	ACTGG	3 cut(s)	275, 355, 674
Bse3DI	GCAATG	2 cut(s)	53, 768
BseBI	CCWGG	3 cut(s)	544, 590, 746
BseDI	CCNNGG	2 cut(s)	78, 543
BseGI	GGATG	2 cut(s)	864, 977
BseLI	CCNNNNNNNGG	3 cut(s)	722, 849, 954
BseMI	GCAATG	2 cut(s)	53, 768
BseMII	CTCAG	2 cut(s)	8, 334
BseNI	ACTGG	3 cut(s)	275, 355, 674
BseRI	GAGGAG	1 cut(s)	67
BseYI	CCCAGC	1 cut(s)	772
Bsh1236I	CGCG	1 cut(s)	245
BshFI	GGCC	6 cut(s)	254, 372, 744, 812, 947, 1258
BshNI	GGYRCC	1 cut(s)	413
BsiHKAI	GWGCWC	2 cut(s)	217, 306
BsiSI	CCGG	1 cut(s)	1301
BslFI	GGGAC	1 cut(s)	528
BslI	CCNNNNNNNGG	3 cut(s)	722, 849, 954
BsmAI	GTCTC	1 cut(s)	1130
BsmBI	CGTCTC	1 cut(s)	1130
BsmFI	GGGAC	1 cut(s)	528
BsnI	GGCC	6 cut(s)	254, 372, 744, 812, 947, 1258
Bsp1286I	GDGCHC	3 cut(s)	217, 277, 306
Bsp143I	GATC	2 cut(s)	238, 927
BspACI	CCGC	5 cut(s)	224, 695, 843, 1042, 1255
BspANI	GGCC	6 cut(s)	254, 372, 744, 812, 947, 1258
BspCNI	CTCAG	2 cut(s)	9, 333
BspFNI	CGCG	1 cut(s)	245
BspLI	GGNNCC	3 cut(s)	253, 415, 1305
BspMAI	CTGCAG	1 cut(s)	736
BspPI	GGATC	1 cut(s)	922
BspT107I	GGYRCC	1 cut(s)	413
BsrDI	GCAATG	2 cut(s)	53, 768
BsrI	ACTGG	3 cut(s)	275, 355, 674
BssECI	CCNNGG	2 cut(s)	78, 543
BssMI	GATC	2 cut(s)	238, 927
BssNAI	GTATAC	1 cut(s)	922
BssNI	GRCGYC	1 cut(s)	93
Bst1107I	GTATAC	1 cut(s)	922
Bst2UI	CCWGG	3 cut(s)	544, 590, 746
Bst4CI	ACNGT	1 cut(s)	1124
Bst6I	CTCTTC	3 cut(s)	70, 999, 1149
BstACI	GRCGYC	1 cut(s)	93
BstAPI	GCANNNNNTGC	3 cut(s)	434, 554, 1013
BstC8I	GCNNGC	7 cut(s)	277, 316, 326, 568, 586, 742, 1078
BstDEI	CTNAG	3 cut(s)	17, 320, 898
BstF5I	GGATG	2 cut(s)	864, 977
BstFNI	CGCG	1 cut(s)	245
BstH2I	RGCGCY	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	2 cut(s)	241, 930
BstMAI	GTCTC	1 cut(s)	1130
BstMBI	GATC	2 cut(s)	238, 927
BstNI	CCWGG	3 cut(s)	544, 590, 746
BstNSI	RCATGY	2 cut(s)	328, 408
BstSCI	CCNGG	4 cut(s)	542, 588, 744, 1299
BstSFI	CTRYAG	1 cut(s)	732
BstUI	CGCG	1 cut(s)	245
BstZ17I	GTATAC	1 cut(s)	922
BsuRI	GGCC	6 cut(s)	254, 372, 744, 812, 947, 1258
BtsCI	GGATG	2 cut(s)	864, 977
BtsI	GCAGTG	2 cut(s)	107, 570
BtsIMutI	CAGTG	2 cut(s)	107, 570
Cac8I	GCNNGC	7 cut(s)	277, 316, 326, 568, 586, 742, 1078
CaiI	CAGNNNCTG	2 cut(s)	434, 740
CfoI	GCGC	1 cut(s)	198
Cfr13I	GGNCC	3 cut(s)	252, 811, 1039
CseI	GACGC	2 cut(s)	234, 525
Csp6I	GTAC	2 cut(s)	268, 414
CviAII	CATG	8 cut(s)	325, 374, 405, 418, 533, 684, 1073, 1102
CviQI	GTAC	2 cut(s)	268, 414
DdeI	CTNAG	3 cut(s)	17, 320, 898
DpnI	GATC	2 cut(s)	240, 929
DpnII	GATC	2 cut(s)	238, 927
DraI	TTTAAA	1 cut(s)	447
EaeI	YGGCCR	3 cut(s)	370, 742, 1256
Eam1104I	CTCTTC	3 cut(s)	70, 999, 1149
EarI	CTCTTC	3 cut(s)	70, 999, 1149
Ecl136II	GAGCTC	1 cut(s)	304
Eco24I	GRGCYC	2 cut(s)	277, 306
Eco47I	GGWCC	1 cut(s)	1039
Eco53kI	GAGCTC	1 cut(s)	304
Eco57I	CTGAAG	3 cut(s)	153, 200, 1173
EcoICRI	GAGCTC	1 cut(s)	304
EcoO109I	RGGNCCY	1 cut(s)	252
EcoRI	GAATTC	2 cut(s)	1159, 1231
EcoRII	CCWGG	3 cut(s)	542, 588, 744
EcoT22I	ATGCAT	1 cut(s)	643
EcoT38I	GRGCYC	2 cut(s)	277, 306
Esp3I	CGTCTC	1 cut(s)	1130
FaeI	CATG	8 cut(s)	328, 377, 408, 421, 536, 687, 1076, 1105
FaqI	GGGAC	1 cut(s)	528
FatI	CATG	8 cut(s)	324, 373, 404, 417, 532, 683, 1072, 1101
FauNDI	CATATG	1 cut(s)	1270
FblI	GTMKAC	1 cut(s)	921
FokI	GGATG	2 cut(s)	871, 984
FriOI	GRGCYC	2 cut(s)	277, 306
FspBI	CTAG	3 cut(s)	185, 329, 1059
GlaI	GCGC	1 cut(s)	197
GsaI	CCCAGC	1 cut(s)	776
GsuI	CTGGAG	1 cut(s)	867
HaeII	RGCGCY	1 cut(s)	199
HaeIII	GGCC	6 cut(s)	254, 372, 744, 812, 947, 1258
HapII	CCGG	1 cut(s)	1301
HgaI	GACGC	2 cut(s)	234, 525
HhaI	GCGC	1 cut(s)	198
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	8 cut(s)	328, 377, 408, 421, 536, 687, 1076, 1105
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HincII	GTYRAC	1 cut(s)	1210
HindII	GTYRAC	1 cut(s)	1210
HindIII	AAGCTT	1 cut(s)	261
HinfI	GANTC	6 cut(s)	21, 173, 207, 667, 939, 986
HpaII	CCGG	1 cut(s)	1301
HphI	GGTGA	6 cut(s)	144, 150, 156, 532, 662, 1112
Hpy166II	GTNNAC	2 cut(s)	922, 1210
Hpy188I	TCNGA	6 cut(s)	172, 180, 212, 888, 1132, 1165
Hpy188III	TCNNGA	7 cut(s)	345, 390, 513, 969, 983, 1037, 1323
Hpy8I	GTNNAC	2 cut(s)	922, 1210
Hpy99I	CGWCG	2 cut(s)	95, 98
HpyAV	CCTTC	5 cut(s)	165, 171, 177, 1091, 1317
HpyCH4III	ACNGT	1 cut(s)	1124
HpyCH4IV	ACGT	1 cut(s)	93
HpyF3I	CTNAG	3 cut(s)	17, 320, 898
HpySE526I	ACGT	1 cut(s)	93
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	8 cut(s)	328, 377, 408, 421, 536, 687, 1076, 1105
HspAI	GCGC	1 cut(s)	196
KpnI	GGTACC	1 cut(s)	417
Kzo9I	GATC	2 cut(s)	238, 927
LmnI	GCTCC	1 cut(s)	301
LweI	GCATC	5 cut(s)	440, 463, 557, 849, 865
MaeI	CTAG	3 cut(s)	185, 329, 1059
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	2 cut(s)	37, 538
MalI	GATC	2 cut(s)	240, 929
MboI	GATC	2 cut(s)	238, 927
MboII	GAAGA	8 cut(s)	57, 475, 986, 1075, 1082, 1166, 1228, 1311
MhlI	GDGCHC	3 cut(s)	217, 277, 306
MlsI	TGGCCA	2 cut(s)	372, 744
MluCI	AATT	5 cut(s)	439, 625, 913, 1159, 1231
MluNI	TGGCCA	2 cut(s)	372, 744
MmeI	TCCRAC	1 cut(s)	380
Mox20I	TGGCCA	2 cut(s)	372, 744
Mph1103I	ATGCAT	1 cut(s)	643
MscI	TGGCCA	2 cut(s)	372, 744
MseI	TTAA	3 cut(s)	446, 629, 908
MslI	CAYNNNNRTG	1 cut(s)	823
Msp20I	TGGCCA	2 cut(s)	372, 744
MspA1I	CMGCKG	4 cut(s)	608, 737, 776, 845
MspI	CCGG	1 cut(s)	1301
MspR9I	CCNGG	4 cut(s)	544, 590, 746, 1301
MvaI	CCWGG	3 cut(s)	544, 590, 746
MvnI	CGCG	1 cut(s)	245
NciI	CCSGG	1 cut(s)	1301
NdeI	CATATG	1 cut(s)	1270
NdeII	GATC	2 cut(s)	238, 927
NlaIII	CATG	8 cut(s)	328, 377, 408, 421, 536, 687, 1076, 1105
NlaIV	GGNNCC	3 cut(s)	253, 415, 1305
NmeAIII	GCCGAG	2 cut(s)	59, 200
NmuCI	GTSAC	1 cut(s)	538
NsiI	ATGCAT	1 cut(s)	643
NspI	RCATGY	2 cut(s)	328, 408
PaeI	GCATGC	1 cut(s)	328
PciI	ACATGT	1 cut(s)	404
PcsI	WCGNNNNNNNCGW	1 cut(s)	1025
PfeI	GAWTC	6 cut(s)	21, 173, 207, 667, 939, 986
PscI	ACATGT	1 cut(s)	404
Psp124BI	GAGCTC	1 cut(s)	306
Psp6I	CCWGG	3 cut(s)	542, 588, 744
PspFI	CCCAGC	1 cut(s)	772
PspGI	CCWGG	3 cut(s)	542, 588, 744
PspN4I	GGNNCC	3 cut(s)	253, 415, 1305
PspPI	GGNCC	3 cut(s)	252, 811, 1039
PstI	CTGCAG	1 cut(s)	736
PstNI	CAGNNNCTG	2 cut(s)	434, 740
PvuII	CAGCTG	3 cut(s)	608, 737, 776
RsaI	GTAC	2 cut(s)	269, 415
RsaNI	GTAC	2 cut(s)	268, 414
RseI	CAYNNNNRTG	1 cut(s)	823
SacI	GAGCTC	1 cut(s)	306
SaqAI	TTAA	3 cut(s)	446, 629, 908
Sau3AI	GATC	2 cut(s)	238, 927
Sau96I	GGNCC	3 cut(s)	252, 811, 1039
ScrFI	CCNGG	4 cut(s)	544, 590, 746, 1301
SduI	GDGCHC	3 cut(s)	217, 277, 306
SfaNI	GCATC	5 cut(s)	440, 463, 557, 849, 865
SfcI	CTRYAG	1 cut(s)	732
SinI	GGWCC	1 cut(s)	1039
SmiMI	CAYNNNNRTG	1 cut(s)	823
SphI	GCATGC	1 cut(s)	328
Sse9I	AATT	5 cut(s)	439, 625, 913, 1159, 1231
SsiI	CCGC	5 cut(s)	224, 695, 843, 1042, 1255
SspMI	CTAG	3 cut(s)	185, 329, 1059
SstI	GAGCTC	1 cut(s)	306
StyD4I	CCNGG	4 cut(s)	542, 588, 744, 1299
TaaI	ACNGT	1 cut(s)	1124
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	2 cut(s)	100, 1214
TasI	AATT	5 cut(s)	439, 625, 913, 1159, 1231
TauI	GCSGC	3 cut(s)	227, 845, 1258
TfiI	GAWTC	6 cut(s)	21, 173, 207, 667, 939, 986
Tru1I	TTAA	3 cut(s)	446, 629, 908
Tru9I	TTAA	3 cut(s)	446, 629, 908
TscAI	CASTG	2 cut(s)	114, 577
TseFI	GTSAC	1 cut(s)	538
Tsp45I	GTSAC	1 cut(s)	538
TspDTI	ATGAA	4 cut(s)	497, 1061, 1090, 1173
TspGWI	ACGGA	1 cut(s)	645
TspRI	CASTG	2 cut(s)	114, 577
VpaK11BI	GGWCC	1 cut(s)	1039
XapI	RAATTY	3 cut(s)	625, 1159, 1231
XceI	RCATGY	2 cut(s)	328, 408
XcmI	CCANNNNNNNNNTGG	2 cut(s)	681, 723
XmiI	GTMKAC	1 cut(s)	921
XspI	CTAG	3 cut(s)	185, 329, 1059
ZraI	GACGTC	1 cut(s)	94
Zsp2I	ATGCAT	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.