Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002645

Physical Location & Seq

Genomic Coordinates Reverse (-)

23230768 .. 23239778

Gene Structure 9011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00302880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGATCGGCACAGCTATCATCATTTACTTGAAAATCAAACTAATTCTTCCGTACAAACAAGGGAGAACTCTCCAGCCTCATAAGCGACTAACTGGGTGTTTTTGCTCCGATTATTATGAACTACTTTCACATTGTTTGCACCACAATGCAATTTCTGCTACTGTTTGGGCCTCCAAATCTGTACAGATGGCTCGCTTCTTTGGTCGCTGTTATTGGGAGCTCTCGAAAGCGCGCCTCAGCATGCTAGTCGTTGCAACTAGTGGAACTGGATTTGTTCTCGGAAGTAGCAGTGGCTGCAGTACTGATTTTTCTAGACTTCTTTGGACATGCACCGCCACAATGATGGTTGCAGCTTCCGCTAATTCCTTAAACCAGGTATTCGAGAAGGATAACGATGCCAAAATGAAGAGGACGATGAAAAGACCCTTGCCTTCGGGACGCATTGGTAGGCCTCATGCGGTCGCCTGGGCATGTATTGCTGGTGTAGCTGACGTTACTTTGTTAGCAAGCAAGTCTAATATGTTGGCAGCTGGTCTTCCAGCTTCTACTCTGATACTCTACGCATTTGTGTACACTCCAATGAAGCAGATTCACCCGGTGAACACATGGATCGGCCCGATTGTTGGAGCGATCCCACCACTTCTAGGTTGGGCGGCAGCTTCTGGAGGCCGGGTTTCGCGTAAAGTAATGATTCTCCCAGTTGCTTTGTATTTTTGGCAAATACCTCATTTTATGACCCTCGCTTACTTGTGCCACAAGGATTACACTGCCGGAGGGTTTAGGATGTTGTCTTCTGGTCAAGGAACGGCCTCTGTGGCTTTGAGGAATTCTGCATACCTAATTCCGTTGGGATTCTTGGCATATGATTGGGGTGTCACTTCTGGATGGTTTTTTGTAGAGTCTACTTTTCTAACTCTAGCAATGAGCACGTCAGCATTTTCATTCTACCAAGATCCTTCTACAGGTAAAGCTAGGAGGTTGTTTTGCGCCAGCCTCGTTTATCTTCCTGTATTTATGTTAGGGATTCTGCTTCACCGTGTATCTGATAATAAACAATGCTTGGTTGAACGGAATTCGATGAGTATGATTGCTGATGATATTTCAATGTCGTGCTCACCAGTATCAAATACTTCTGTTGCCCCATTTCCTTCATGTGCTTTGAGTCCCTGTAGGTTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0015980 GO:0016740 GO:0016765 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00190 ko00860 ko01100 ko01110 ko04714 map00190 map00860 map01100 map01110 map04714

Pfam Domains

Protein Families

UbiA

Protein Analysis

393

Amino Acids

42.99

Weight (kDa)

9.55

Isoelectric Point (pI)

42.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UbiA	PF01040	93 - 328	1.9e-44	UbiA prenyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44520
fragaria_vesca	FvH4_2g12720 FvH4_2g12720
malus_domestica	MD08G1235300.v1.1 MD15G1426600.v1.1
prunus_persica	Prupe.1G571600_v2.0.a1
pyrus_communis	pycom08g20360 pycom15g37750 pycom15g37820 pycom15g37850
rosa_chinensis	RchiOBHm_Chr6g0271171 RchiOBHm_Chr6g0273481 RchiOBHm_Chr7g0200821
rosa_laevigata	RLG00000007702 RLG00000013613 RLG00000030224
rosa_multiflora	Rmu_sc0000367.1_g000112 Rmu_sc0004127.1_g000003 Rmu_sc0005891.1_g000033 Rmu_sc0010380.1_g000010 Rmu_sc0010380.1_g000011
rosa_roxburghii	Rroxscaffold_166G00440760 Rroxscaffold_4G00302880 Rroxscaffold_6G00423080 Rroxscaffold_7G00195280
rosa_rugosa	Rorug03G0044000 Rorug06G0075700 Rorug06G0075800
rosa_samantha	Rh4DG151900 Rh6AG190400 Rh6BG193900 Rh6CG179300 Rh6CG193400 Rh6DG171000 Rh6DG185000 Rh7DG191800
rosa_wichuraiana	Rw0G020450 Rw1G038810 Rw6G016660 Rw7G013720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	902
AccII	CGCG	2 cut(s)	232, 679
AciI	CCGC	4 cut(s)	333, 357, 458, 653
AclWI	GGATC	3 cut(s)	617, 625, 947
AcsI	RAATTY	2 cut(s)	826, 1072
AdeI	CACNNNGTG	1 cut(s)	598
AfaI	GTAC	4 cut(s)	53, 183, 301, 572
AfiI	CCNNNNNNNGG	3 cut(s)	623, 644, 962
AgsI	TTSAA	3 cut(s)	31, 1067, 1104
AhlI	ACTAGT	1 cut(s)	257
AjiI	CACGTC	1 cut(s)	930
AjnI	CCWGG	2 cut(s)	372, 464
AluBI	AGCT	8 cut(s)	14, 220, 353, 488, 530, 542, 659, 971
AluI	AGCT	8 cut(s)	14, 220, 353, 488, 530, 542, 659, 971
Alw21I	GWGCWC	3 cut(s)	222, 929, 1115
AlwI	GGATC	3 cut(s)	617, 625, 947
AlwNI	CAGNNNCTG	2 cut(s)	294, 662
AoxI	GGCC	5 cut(s)	168, 449, 613, 667, 807
ApeKI	GCWGC	4 cut(s)	294, 350, 527, 656
ApoI	RAATTY	2 cut(s)	826, 1072
AspLEI	GCGC	3 cut(s)	232, 234, 989
AspS9I	GGNCC	2 cut(s)	168, 614
AsuC2I	CCSGG	2 cut(s)	596, 671
AsuHPI	GGTGA	4 cut(s)	584, 610, 1025, 1107
BanII	GRGCYC	1 cut(s)	222
BbsI	GAAGAC	2 cut(s)	527, 783
Bbv12I	GWGCWC	3 cut(s)	222, 929, 1115
BbvCI	CCTCAGC	1 cut(s)	236
BbvI	GCAGC	4 cut(s)	281, 362, 539, 668
BccI	CCATC	3 cut(s)	181, 337, 879
BceAI	ACGGC	1 cut(s)	822
BcgI	CGANNNNNNTGC	2 cut(s)	229, 263
BciT130I	CCWGG	2 cut(s)	374, 466
BcnI	CCSGG	2 cut(s)	596, 671
BcuI	ACTAGT	1 cut(s)	257
BfaI	CTAG	6 cut(s)	245, 258, 312, 644, 917, 972
BfmI	CTRYAG	3 cut(s)	295, 960, 1168
BglI	GCCNNNNNGGC	1 cut(s)	815
BisI	GCNGC	5 cut(s)	295, 351, 528, 654, 657
BlsI	GCNGC	5 cut(s)	296, 352, 529, 655, 658
BmcAI	AGTACT	1 cut(s)	301
Bme1390I	CCNGG	4 cut(s)	374, 466, 596, 671
BmgBI	CACGTC	1 cut(s)	930
BmgT120I	GGNCC	2 cut(s)	168, 614
BmrFI	CCNGG	4 cut(s)	374, 466, 596, 671
BmrI	ACTGGG	2 cut(s)	102, 692
BmsI	GCATC	1 cut(s)	385
BmuI	ACTGGG	2 cut(s)	102, 692
BpiI	GAAGAC	2 cut(s)	527, 783
BpmI	CTGGAG	2 cut(s)	56, 684
Bpu10I	CCTNAGC	1 cut(s)	236
BpuMI	CCSGG	2 cut(s)	596, 671
BsaJI	CCNNGG	1 cut(s)	465
BsaXI	ACNNNNNCTCC	2 cut(s)	657, 687
Bsc4I	CCNNNNNNNGG	3 cut(s)	623, 644, 962
Bse1I	ACTGG	4 cut(s)	97, 271, 698, 1118
Bse3DI	GCAATG	1 cut(s)	927
BseBI	CCWGG	2 cut(s)	374, 466
BseDI	CCNNGG	1 cut(s)	465
BseGI	GGATG	2 cut(s)	789, 890
BseLI	CCNNNNNNNGG	3 cut(s)	623, 644, 962
BseMI	GCAATG	1 cut(s)	927
BseMII	CTCAG	1 cut(s)	250
BseNI	ACTGG	4 cut(s)	97, 271, 698, 1118
BsePI	GCGCGC	1 cut(s)	230
BseXI	GCAGC	4 cut(s)	281, 362, 539, 668
Bsh1236I	CGCG	2 cut(s)	232, 679
Bsh1285I	CGRYCG	1 cut(s)	462
BshFI	GGCC	5 cut(s)	170, 451, 615, 669, 809
BsiEI	CGRYCG	1 cut(s)	462
BsiHKAI	GWGCWC	3 cut(s)	222, 929, 1115
BsiSI	CCGG	3 cut(s)	596, 670, 771
BslFI	GGGAC	2 cut(s)	450, 1149
BslI	CCNNNNNNNGG	3 cut(s)	623, 644, 962
BsmFI	GGGAC	2 cut(s)	450, 1149
BsnI	GGCC	5 cut(s)	170, 451, 615, 669, 809
Bsp1286I	GDGCHC	3 cut(s)	222, 929, 1115
Bsp1407I	TGTACA	2 cut(s)	181, 570
Bsp143I	GATC	4 cut(s)	3, 609, 630, 952
BspACI	CCGC	4 cut(s)	333, 357, 458, 653
BspANI	GGCC	5 cut(s)	170, 451, 615, 669, 809
BspCNI	CTCAG	1 cut(s)	249
BspFNI	CGCG	2 cut(s)	232, 679
BspMAI	CTGCAG	1 cut(s)	299
BspPI	GGATC	3 cut(s)	617, 625, 947
BsrDI	GCAATG	1 cut(s)	927
BsrGI	TGTACA	2 cut(s)	181, 570
BsrI	ACTGG	4 cut(s)	97, 271, 698, 1118
BssECI	CCNNGG	1 cut(s)	465
BssHII	GCGCGC	1 cut(s)	230
BssMI	GATC	4 cut(s)	3, 609, 630, 952
Bst2UI	CCWGG	2 cut(s)	374, 466
Bst4CI	ACNGT	2 cut(s)	163, 1037
Bst6I	CTCTTC	1 cut(s)	401
BstAPI	GCANNNNNTGC	3 cut(s)	155, 294, 476
BstAUI	TGTACA	2 cut(s)	181, 570
BstC8I	GCNNGC	5 cut(s)	193, 232, 242, 508, 991
BstDEI	CTNAG	1 cut(s)	236
BstENI	CCTNNNNNAGG	1 cut(s)	960
BstF5I	GGATG	2 cut(s)	789, 890
BstFNI	CGCG	2 cut(s)	232, 679
BstHHI	GCGC	3 cut(s)	232, 234, 989
BstKTI	GATC	4 cut(s)	6, 612, 633, 955
BstMBI	GATC	4 cut(s)	3, 609, 630, 952
BstMCI	CGRYCG	1 cut(s)	462
BstMWI	GCNNNNNNNGC	7 cut(s)	82, 155, 294, 356, 476, 485, 815
BstNI	CCWGG	2 cut(s)	374, 466
BstNSI	RCATGY	3 cut(s)	244, 330, 474
BstSCI	CCNGG	4 cut(s)	372, 464, 594, 669
BstSFI	CTRYAG	3 cut(s)	295, 960, 1168
BstUI	CGCG	2 cut(s)	232, 679
BstV1I	GCAGC	4 cut(s)	281, 362, 539, 668
BstV2I	GAAGAC	2 cut(s)	527, 783
BstX2I	RGATCY	1 cut(s)	952
BstXI	CCANNNNNNTGG	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	952
BsuRI	GGCC	5 cut(s)	170, 451, 615, 669, 809
BtrI	CACGTC	1 cut(s)	930
BtsCI	GGATG	2 cut(s)	789, 890
BtsI	GCAGTG	2 cut(s)	295, 765
BtsIMutI	CAGTG	2 cut(s)	295, 765
Cac8I	GCNNGC	5 cut(s)	193, 232, 242, 508, 991
CaiI	CAGNNNCTG	2 cut(s)	294, 662
CfoI	GCGC	3 cut(s)	232, 234, 989
Cfr13I	GGNCC	2 cut(s)	168, 614
CseI	GACGC	1 cut(s)	447
CsiI	ACCWGGT	1 cut(s)	372
Csp6I	GTAC	4 cut(s)	52, 182, 300, 571
CviAII	CATG	6 cut(s)	241, 327, 455, 471, 606, 1152
CviQI	GTAC	4 cut(s)	52, 182, 300, 571
DdeI	CTNAG	1 cut(s)	236
DpnI	GATC	4 cut(s)	5, 611, 632, 954
DpnII	GATC	4 cut(s)	3, 609, 630, 952
DraIII	CACNNNGTG	1 cut(s)	598
Eam1104I	CTCTTC	1 cut(s)	401
EarI	CTCTTC	1 cut(s)	401
Ecl136II	GAGCTC	1 cut(s)	220
Eco147I	AGGCCT	1 cut(s)	451
Eco24I	GRGCYC	1 cut(s)	222
Eco53kI	GAGCTC	1 cut(s)	220
EcoICRI	GAGCTC	1 cut(s)	220
EcoNI	CCTNNNNNAGG	1 cut(s)	960
EcoRI	GAATTC	2 cut(s)	826, 1072
EcoRII	CCWGG	2 cut(s)	372, 464
EcoT38I	GRGCYC	1 cut(s)	222
FaeI	CATG	6 cut(s)	244, 330, 458, 474, 609, 1155
FaqI	GGGAC	2 cut(s)	450, 1149
FatI	CATG	6 cut(s)	240, 326, 454, 470, 605, 1151
FauNDI	CATATG	1 cut(s)	862
FblI	GTMKAC	1 cut(s)	902
Fnu4HI	GCNGC	5 cut(s)	295, 351, 528, 654, 657
FokI	GGATG	2 cut(s)	796, 897
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	5 cut(s)	295, 351, 528, 654, 657
FspBI	CTAG	6 cut(s)	245, 258, 312, 644, 917, 972
GlaI	GCGC	3 cut(s)	231, 233, 988
GluI	GCNGC	5 cut(s)	295, 351, 528, 654, 657
GsuI	CTGGAG	2 cut(s)	56, 684
HaeIII	GGCC	5 cut(s)	170, 451, 615, 669, 809
HapII	CCGG	3 cut(s)	596, 670, 771
HgaI	GACGC	1 cut(s)	447
HhaI	GCGC	3 cut(s)	232, 234, 989
Hin1II	CATG	6 cut(s)	244, 330, 458, 474, 609, 1155
Hin6I	GCGC	3 cut(s)	230, 232, 987
HinP1I	GCGC	3 cut(s)	230, 232, 987
HinfI	GANTC	6 cut(s)	589, 691, 852, 899, 1024, 1162
HpaII	CCGG	3 cut(s)	596, 670, 771
HphI	GGTGA	4 cut(s)	584, 610, 1025, 1107
Hpy166II	GTNNAC	4 cut(s)	571, 573, 601, 903
Hpy188I	TCNGA	4 cut(s)	109, 281, 552, 1045
Hpy188III	TCNNGA	6 cut(s)	223, 312, 382, 435, 663, 882
Hpy8I	GTNNAC	4 cut(s)	571, 573, 601, 903
HpyAV	CCTTC	4 cut(s)	379, 441, 966, 1158
HpyCH4III	ACNGT	2 cut(s)	163, 1037
HpyCH4IV	ACGT	2 cut(s)	492, 929
HpyCH4V	TGCA	7 cut(s)	139, 149, 254, 297, 330, 350, 833
HpyF10VI	GCNNNNNNNGC	7 cut(s)	82, 155, 294, 356, 476, 485, 815
HpyF3I	CTNAG	1 cut(s)	236
HpySE526I	ACGT	2 cut(s)	492, 929
Hsp92II	CATG	6 cut(s)	244, 330, 458, 474, 609, 1155
HspAI	GCGC	3 cut(s)	230, 232, 987
Kzo9I	GATC	4 cut(s)	3, 609, 630, 952
LmnI	GCTCC	3 cut(s)	110, 217, 626
Lsp1109I	GCAGC	4 cut(s)	281, 362, 539, 668
LweI	GCATC	1 cut(s)	385
MabI	ACCWGGT	1 cut(s)	372
MaeI	CTAG	6 cut(s)	245, 258, 312, 644, 917, 972
MaeII	ACGT	2 cut(s)	492, 929
MaeIII	GTNAC	2 cut(s)	493, 874
MalI	GATC	4 cut(s)	5, 611, 632, 954
MboI	GATC	4 cut(s)	3, 609, 630, 952
MboII	GAAGA	5 cut(s)	38, 418, 527, 783, 995
MflI	RGATCY	1 cut(s)	952
MhlI	GDGCHC	3 cut(s)	222, 929, 1115
MluCI	AATT	6 cut(s)	42, 150, 361, 826, 840, 1072
MlyI	GAGTC	2 cut(s)	908, 1171
MmeI	TCCRAC	1 cut(s)	604
MseI	TTAA	1 cut(s)	368
MslI	CAYNNNNRTG	3 cut(s)	144, 341, 578
MspA1I	CMGCKG	1 cut(s)	530
MspI	CCGG	3 cut(s)	596, 670, 771
MspR9I	CCNGG	4 cut(s)	374, 466, 596, 671
MvaI	CCWGG	2 cut(s)	374, 466
MvnI	CGCG	2 cut(s)	232, 679
MwoI	GCNNNNNNNGC	7 cut(s)	82, 155, 294, 356, 476, 485, 815
NciI	CCSGG	2 cut(s)	596, 671
NdeI	CATATG	1 cut(s)	862
NdeII	GATC	4 cut(s)	3, 609, 630, 952
NlaIII	CATG	6 cut(s)	244, 330, 458, 474, 609, 1155
NmuCI	GTSAC	1 cut(s)	874
NspI	RCATGY	3 cut(s)	244, 330, 474
PaeI	GCATGC	1 cut(s)	244
PauI	GCGCGC	1 cut(s)	230
PceI	AGGCCT	1 cut(s)	451
PfeI	GAWTC	4 cut(s)	589, 691, 852, 1024
PkrI	GCNGC	5 cut(s)	296, 352, 529, 655, 658
PleI	GAGTC	2 cut(s)	907, 1170
PpsI	GAGTC	2 cut(s)	907, 1170
Psp124BI	GAGCTC	1 cut(s)	222
Psp6I	CCWGG	2 cut(s)	372, 464
PspGI	CCWGG	2 cut(s)	372, 464
PspPI	GGNCC	2 cut(s)	168, 614
PstI	CTGCAG	1 cut(s)	299
PstNI	CAGNNNCTG	2 cut(s)	294, 662
PsuI	RGATCY	1 cut(s)	952
PteI	GCGCGC	1 cut(s)	230
PvuII	CAGCTG	1 cut(s)	530
RsaI	GTAC	4 cut(s)	53, 183, 301, 572
RsaNI	GTAC	4 cut(s)	52, 182, 300, 571
RseI	CAYNNNNRTG	3 cut(s)	144, 341, 578
SacI	GAGCTC	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	368
SatI	GCNGC	5 cut(s)	295, 351, 528, 654, 657
Sau3AI	GATC	4 cut(s)	3, 609, 630, 952
Sau96I	GGNCC	2 cut(s)	168, 614
ScaI	AGTACT	1 cut(s)	301
SchI	GAGTC	2 cut(s)	908, 1171
ScrFI	CCNGG	4 cut(s)	374, 466, 596, 671
SduI	GDGCHC	3 cut(s)	222, 929, 1115
SexAI	ACCWGGT	1 cut(s)	372
SfaNI	GCATC	1 cut(s)	385
SfcI	CTRYAG	3 cut(s)	295, 960, 1168
SmiMI	CAYNNNNRTG	3 cut(s)	144, 341, 578
SpeI	ACTAGT	1 cut(s)	257
SphI	GCATGC	1 cut(s)	244
Sse9I	AATT	6 cut(s)	42, 150, 361, 826, 840, 1072
SseBI	AGGCCT	1 cut(s)	451
SsiI	CCGC	4 cut(s)	333, 357, 458, 653
SspMI	CTAG	6 cut(s)	245, 258, 312, 644, 917, 972
SstI	GAGCTC	1 cut(s)	222
StuI	AGGCCT	1 cut(s)	451
StyD4I	CCNGG	4 cut(s)	372, 464, 594, 669
TaaI	ACNGT	2 cut(s)	163, 1037
TaiI	ACGT	2 cut(s)	495, 932
TaqI	TCGA	3 cut(s)	224, 381, 1076
TasI	AATT	6 cut(s)	42, 150, 361, 826, 840, 1072
TatI	WGTACW	3 cut(s)	181, 299, 570
TauI	GCSGC	1 cut(s)	656
TfiI	GAWTC	4 cut(s)	589, 691, 852, 1024
Tru1I	TTAA	1 cut(s)	368
Tru9I	TTAA	1 cut(s)	368
TscAI	CASTG	2 cut(s)	295, 772
TseFI	GTSAC	1 cut(s)	874
TseI	GCWGC	4 cut(s)	294, 350, 527, 656
Tsp45I	GTSAC	1 cut(s)	874
TspDTI	ATGAA	6 cut(s)	132, 419, 431, 596, 930, 1140
TspGWI	ACGGA	3 cut(s)	39, 834, 1084
TspRI	CASTG	2 cut(s)	295, 772
XagI	CCTNNNNNAGG	1 cut(s)	960
XapI	RAATTY	2 cut(s)	826, 1072
XbaI	TCTAGA	1 cut(s)	311
XceI	RCATGY	3 cut(s)	244, 330, 474
XcmI	CCANNNNNNNNNTGG	1 cut(s)	645
XmiI	GTMKAC	1 cut(s)	902
XspI	CTAG	6 cut(s)	245, 258, 312, 644, 917, 972
ZrmI	AGTACT	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.