Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002645

Physical Location & Seq

Genomic Coordinates Reverse (-)

10075507 .. 10078133

Gene Structure 2627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0075800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

ATGGAAACCAAAACAGATCAGCAGCTTCACATTTTCTTCCTTCCATACATGGCTCATGGCCACACTTTACCCCTCATAGACATAGCCAAACTATTCGCTTCCCATGGTTCCAAGTCCACCATCATAACCACCCCTCTCAATGCACCACTCATCTCTAAATCAATCCAATCAAGCAAAAGTTTGGGTTTAGAAATTGACCTTCTTGTCATCAAATTTCCATCTATTGAGGTTGGGTTGCCTGAAGGAATTGAAAGTGCTAACTTGGCTACAACCCGAGAGATGAAGGAAAAGCTCTACAAAGCCTGCACCCTGCTTGCACCACAGGTAGAGCAGATTTTAGAACAATATCATCCTCACTGCCTTGTTGCAGACAGTTTATATCATTGGGCTACAGATCTCGCTGCCAAGTTTGGGATTCCAAGGCTCATCTTTCATGGAATTAGTTTTTTCGCCTTGTGTGCTTCAATGAGTGTGATACTCTACCAACCTCACTTGAAGGTTTCATCTGATTCAGAATCTTTTGTTATTCCTAATCTTCCAGATGAGATCAAGACCACAAGAAACCAAGTACCAGCTTTTCTCAATCTAAATGGCAAAACAGAACTCATCAAGTTGGTCAAAGCATCTATAGAGGCTGAGGAAAGGAGCTATGGGAGTATTGTTAACAGCTTCTACGAACTTGAACCGGATTATGCAGATCATTATAGGAAAGTTTTGGGCAGGAAATCATGGCACATTGGCCCGGTTTCTCTATGCAACAAGGCAGAAACAGATAAATCAGAGAGGGGAAGGGGAGGATCTGTTGATGAAGTACATGAGTGCATGAATTGGCTTAATTCTAAGGAACCAAATACAGTTGTTTACATCTGTTTTGGAAGCCTCACCATTTTCAACGATTGTCAGCTCATAGAGATTGCCTTGGCTCTTGAGGCTTCTCAGCAGCAATTCATCTGGGTTGTGAGGAAGGAAAATAATGATAAAGAAGAGTGGTTGCCTAAAGAGTTTGAGCAGAGAATGGAAGGTAAGGGACTCATTATAAGAGGCTGGGCTCCCCAACTACTAATTCTTGAACATGAAGCAACTGGGGCCTTTGTCACTCATTGCGGGTGGAACTCGATCCTTGAAGGAGTTTCTGCTGGGGTTCCAATGATCACGTGGCCGGTGACCGGAGAGCAGTTTTACAATGAGAAGCTGGTGACTGAGTTACTTAGGATTGGGGTTGCTGTTGGTGCCGAAAAGTGGGCTACATTTGAGGAGGAAAGTGCGAAGAGCGAAGCCAGTGTGAAGAGGGAGGCCATAGAGAAGGCTGTGACTGAAATCATGGTGGGTGATGAAGCAGAGGAAATGAGAAGCAGAGCTAAAGCGCTTAGAGAGATGGCAAGCAGGGCTGTTGAAGAAGATGGTTCATCATTCTCCGATTTAACTGCTCTAATTGAAGAGTTAAAGTCCCTTGGGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0015980 GO:0016740 GO:0016765 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00190 ko00860 ko01100 ko01110 ko04714 map00190 map00860 map01100 map01110 map04714

Pfam Domains

Protein Families

UbiA

Protein Analysis

486

Amino Acids

54.3

Weight (kDa)

5.24

Isoelectric Point (pI)

46.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	273 - 400	5.6e-21	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44520
fragaria_vesca	FvH4_2g12720 FvH4_2g12720
malus_domestica	MD08G1235300.v1.1 MD15G1426600.v1.1
prunus_persica	Prupe.1G571600_v2.0.a1
pyrus_communis	pycom08g20360 pycom15g37750 pycom15g37820 pycom15g37850
rosa_chinensis	RchiOBHm_Chr6g0271171 RchiOBHm_Chr6g0273481 RchiOBHm_Chr7g0200821
rosa_laevigata	RLG00000007702 RLG00000013613 RLG00000030224
rosa_multiflora	Rmu_sc0000367.1_g000112 Rmu_sc0004127.1_g000003 Rmu_sc0005891.1_g000033 Rmu_sc0010380.1_g000010 Rmu_sc0010380.1_g000011
rosa_roxburghii	Rroxscaffold_166G00440760 Rroxscaffold_4G00302880 Rroxscaffold_6G00423080 Rroxscaffold_7G00195280
rosa_rugosa	Rorug03G0044000 Rorug06G0075700 Rorug06G0075800
rosa_samantha	Rh4DG151900 Rh6AG190400 Rh6BG193900 Rh6CG179300 Rh6CG193400 Rh6DG171000 Rh6DG185000 Rh7DG191800
rosa_wichuraiana	Rw0G020450 Rw1G038810 Rw6G016660 Rw7G013720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1037
AasI	GACNNNNNNGTC	1 cut(s)	203
AccB1I	GGYRCC	1 cut(s)	1229
AciI	CCGC	1 cut(s)	1104
AclWI	GGATC	2 cut(s)	805, 1111
AcoI	YGGCCR	2 cut(s)	58, 1157
AcsI	RAATTY	1 cut(s)	212
AcuI	CTGAAG	1 cut(s)	261
AcvI	CACGTG	1 cut(s)	1155
AfaI	GTAC	2 cut(s)	570, 813
AfeI	AGCGCT	1 cut(s)	1365
AfiI	CCNNNNNNNGG	3 cut(s)	411, 1166, 1239
AgsI	TTSAA	9 cut(s)	251, 465, 496, 683, 892, 1070, 1124, 1394, 1436
AjuI	GAANNNNNNNTTGG	2 cut(s)	1047, 1079
AluBI	AGCT	8 cut(s)	25, 292, 575, 648, 669, 904, 1192, 1358
AluI	AGCT	8 cut(s)	25, 292, 575, 648, 669, 904, 1192, 1358
AlwI	GGATC	2 cut(s)	805, 1111
Ama87I	CYCGRG	1 cut(s)	273
Aor51HI	AGCGCT	1 cut(s)	1365
AoxI	GGCC	5 cut(s)	58, 739, 1086, 1157, 1293
ApeKI	GCWGC	3 cut(s)	22, 401, 940
ApoI	RAATTY	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	1366
AspS9I	GGNCC	2 cut(s)	740, 1086
AsuC2I	CCSGG	1 cut(s)	743
AsuHPI	GGTGA	4 cut(s)	874, 1174, 1207, 1340
AvaI	CYCGRG	1 cut(s)	273
BalI	TGGCCA	1 cut(s)	60
BanI	GGYRCC	1 cut(s)	1229
BanII	GRGCYC	1 cut(s)	1051
BbrPI	CACGTG	1 cut(s)	1155
BbvCI	CCTCAGC	1 cut(s)	636
BbvI	GCAGC	3 cut(s)	34, 388, 952
BccI	CCATC	4 cut(s)	128, 226, 1369, 1394
BcgI	CGANNNNNNTGC	2 cut(s)	1406, 1440
BclI	TGATCA	1 cut(s)	1149
BcnI	CCSGG	1 cut(s)	743
BfmI	CTRYAG	2 cut(s)	390, 627
BfoI	RGCGCY	1 cut(s)	1367
BglII	AGATCT	1 cut(s)	394
BisI	GCNGC	3 cut(s)	23, 402, 941
BlsI	GCNGC	3 cut(s)	24, 403, 942
Bme1390I	CCNGG	1 cut(s)	743
BmeT110I	CYCGRG	1 cut(s)	273
BmgT120I	GGNCC	2 cut(s)	740, 1086
BmiI	GGNNCC	6 cut(s)	109, 846, 1050, 1087, 1143, 1231
BmrFI	CCNGG	1 cut(s)	743
BmrI	ACTGGG	1 cut(s)	1092
BmsI	GCATC	1 cut(s)	632
BmuI	ACTGGG	1 cut(s)	1092
Bpu10I	CCTNAGC	1 cut(s)	636
BpuEI	CTTGAG	1 cut(s)	947
BpuMI	CCSGG	1 cut(s)	743
BsaAI	YACGTR	1 cut(s)	1155
BsaJI	CCNNGG	4 cut(s)	103, 419, 918, 1450
BsaWI	WCCGGW	2 cut(s)	685, 1166
BsaXI	ACNNNNNCTCC	2 cut(s)	786, 816
Bsc4I	CCNNNNNNNGG	3 cut(s)	411, 1166, 1239
Bse118I	RCCGGY	1 cut(s)	1159
Bse1I	ACTGG	2 cut(s)	1087, 1278
Bse3DI	GCAATG	1 cut(s)	1099
BseDI	CCNNGG	4 cut(s)	103, 419, 918, 1450
BseGI	GGATG	1 cut(s)	349
BseLI	CCNNNNNNNGG	3 cut(s)	411, 1166, 1239
BseMI	GCAATG	1 cut(s)	1099
BseMII	CTCAG	3 cut(s)	627, 950, 1191
BseNI	ACTGG	2 cut(s)	1087, 1278
BseRI	GAGGAG	1 cut(s)	1268
BseXI	GCAGC	3 cut(s)	34, 388, 952
BseYI	CCCAGC	2 cut(s)	1044, 1136
BsgI	GTGCAG	1 cut(s)	289
BshFI	GGCC	5 cut(s)	60, 741, 1088, 1159, 1295
BshNI	GGYRCC	1 cut(s)	1229
BsiHKCI	CYCGRG	1 cut(s)	273
BsiSI	CCGG	4 cut(s)	686, 743, 1160, 1167
BslFI	GGGAC	2 cut(s)	1041, 1432
BslI	CCNNNNNNNGG	3 cut(s)	411, 1166, 1239
BsmFI	GGGAC	2 cut(s)	1041, 1432
BsnI	GGCC	5 cut(s)	60, 741, 1088, 1159, 1295
BsoBI	CYCGRG	1 cut(s)	273
Bsp1286I	GDGCHC	1 cut(s)	1051
Bsp143I	GATC	7 cut(s)	16, 394, 546, 697, 797, 1116, 1149
Bsp19I	CCATGG	1 cut(s)	103
BspACI	CCGC	1 cut(s)	1104
BspANI	GGCC	5 cut(s)	60, 741, 1088, 1159, 1295
BspCNI	CTCAG	3 cut(s)	628, 949, 1192
BspHI	TCATGA	1 cut(s)	1457
BspLI	GGNNCC	6 cut(s)	109, 846, 1050, 1087, 1143, 1231
BspPI	GGATC	2 cut(s)	805, 1111
BspQI	GCTCTTC	1 cut(s)	1262
BspT107I	GGYRCC	1 cut(s)	1229
BsrDI	GCAATG	1 cut(s)	1099
BsrFI	RCCGGY	1 cut(s)	1159
BsrI	ACTGG	2 cut(s)	1087, 1278
BssAI	RCCGGY	1 cut(s)	1159
BssECI	CCNNGG	4 cut(s)	103, 419, 918, 1450
BssMI	GATC	7 cut(s)	16, 394, 546, 697, 797, 1116, 1149
BssT1I	CCWWGG	4 cut(s)	103, 419, 918, 1450
Bst4CI	ACNGT	2 cut(s)	374, 856
Bst6I	CTCTTC	4 cut(s)	978, 1262, 1280, 1431
BstBAI	YACGTR	1 cut(s)	1155
BstC8I	GCNNGC	3 cut(s)	304, 315, 1381
BstDEI	CTNAG	6 cut(s)	636, 840, 936, 1200, 1208, 1367
BstDSI	CCRYGG	1 cut(s)	103
BstEII	GGTNACC	1 cut(s)	1162
BstF5I	GGATG	1 cut(s)	349
BstH2I	RGCGCY	1 cut(s)	1367
BstHHI	GCGC	1 cut(s)	1366
BstKTI	GATC	7 cut(s)	19, 397, 549, 700, 800, 1119, 1152
BstMBI	GATC	7 cut(s)	16, 394, 546, 697, 797, 1116, 1149
BstMWI	GCNNNNNNNGC	6 cut(s)	263, 458, 929, 1085, 1229, 1385
BstPI	GGTNACC	1 cut(s)	1162
BstSCI	CCNGG	1 cut(s)	741
BstSFI	CTRYAG	2 cut(s)	390, 627
BstV1I	GCAGC	3 cut(s)	34, 388, 952
BstX2I	RGATCY	2 cut(s)	394, 797
BstYI	RGATCY	2 cut(s)	394, 797
BsuRI	GGCC	5 cut(s)	60, 741, 1088, 1159, 1295
BtgI	CCRYGG	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	349
BtsI	GCAGTG	1 cut(s)	355
BtsIMutI	CAGTG	2 cut(s)	355, 1285
Cac8I	GCNNGC	3 cut(s)	304, 315, 1381
CciI	TCATGA	1 cut(s)	1457
CfoI	GCGC	1 cut(s)	1366
Cfr10I	RCCGGY	1 cut(s)	1159
Cfr13I	GGNCC	2 cut(s)	740, 1086
Csp6I	GTAC	2 cut(s)	569, 812
CviQI	GTAC	2 cut(s)	569, 812
DdeI	CTNAG	6 cut(s)	636, 840, 936, 1200, 1208, 1367
DpnI	GATC	7 cut(s)	18, 396, 548, 699, 799, 1118, 1151
DpnII	GATC	7 cut(s)	16, 394, 546, 697, 797, 1116, 1149
DrdI	GACNNNNNNGTC	1 cut(s)	203
DseDI	GACNNNNNNGTC	1 cut(s)	203
EaeI	YGGCCR	2 cut(s)	58, 1157
Eam1104I	CTCTTC	4 cut(s)	978, 1262, 1280, 1431
EarI	CTCTTC	4 cut(s)	978, 1262, 1280, 1431
Eco130I	CCWWGG	4 cut(s)	103, 419, 918, 1450
Eco24I	GRGCYC	1 cut(s)	1051
Eco47III	AGCGCT	1 cut(s)	1365
Eco57I	CTGAAG	1 cut(s)	261
Eco72I	CACGTG	1 cut(s)	1155
Eco88I	CYCGRG	1 cut(s)	273
Eco91I	GGTNACC	1 cut(s)	1162
EcoO109I	RGGNCCY	1 cut(s)	1086
EcoO65I	GGTNACC	1 cut(s)	1162
EcoT14I	CCWWGG	4 cut(s)	103, 419, 918, 1450
EcoT38I	GRGCYC	1 cut(s)	1051
ErhI	CCWWGG	4 cut(s)	103, 419, 918, 1450
FaqI	GGGAC	2 cut(s)	1041, 1432
FauI	CCCGC	1 cut(s)	1097
FbaI	TGATCA	1 cut(s)	1149
Fnu4HI	GCNGC	3 cut(s)	23, 402, 941
FokI	GGATG	1 cut(s)	336
FriOI	GRGCYC	1 cut(s)	1051
Fsp4HI	GCNGC	3 cut(s)	23, 402, 941
GlaI	GCGC	1 cut(s)	1365
GluI	GCNGC	3 cut(s)	23, 402, 941
GsaI	CCCAGC	2 cut(s)	1048, 1140
HaeII	RGCGCY	1 cut(s)	1367
HaeIII	GGCC	5 cut(s)	60, 741, 1088, 1159, 1295
HapII	CCGG	4 cut(s)	686, 743, 1160, 1167
HhaI	GCGC	1 cut(s)	1366
Hin6I	GCGC	1 cut(s)	1364
HinP1I	GCGC	1 cut(s)	1364
HincII	GTYRAC	1 cut(s)	664
HindII	GTYRAC	1 cut(s)	664
HinfI	GANTC	4 cut(s)	415, 509, 515, 1029
HpaI	GTTAAC	1 cut(s)	664
HpaII	CCGG	4 cut(s)	686, 743, 1160, 1167
HphI	GGTGA	4 cut(s)	874, 1174, 1207, 1340
Hpy166II	GTNNAC	3 cut(s)	117, 664, 862
Hpy188I	TCNGA	4 cut(s)	508, 514, 781, 1417
Hpy188III	TCNNGA	5 cut(s)	539, 550, 926, 1067, 1458
Hpy8I	GTNNAC	3 cut(s)	117, 664, 862
HpyCH4III	ACNGT	2 cut(s)	374, 856
HpyCH4IV	ACGT	1 cut(s)	1154
HpyCH4V	TGCA	7 cut(s)	143, 306, 317, 368, 695, 756, 822
HpyF10VI	GCNNNNNNNGC	6 cut(s)	263, 458, 929, 1085, 1229, 1385
HpyF3I	CTNAG	6 cut(s)	636, 840, 936, 1200, 1208, 1367
HpySE526I	ACGT	1 cut(s)	1154
HspAI	GCGC	1 cut(s)	1364
Ksp22I	TGATCA	1 cut(s)	1149
KspAI	GTTAAC	1 cut(s)	664
Kzo9I	GATC	7 cut(s)	16, 394, 546, 697, 797, 1116, 1149
LguI	GCTCTTC	1 cut(s)	1262
LmnI	GCTCC	2 cut(s)	645, 1054
Lsp1109I	GCAGC	3 cut(s)	34, 388, 952
LweI	GCATC	1 cut(s)	632
MaeII	ACGT	1 cut(s)	1154
MaeIII	GTNAC	5 cut(s)	1093, 1162, 1195, 1203, 1309
MalI	GATC	7 cut(s)	18, 396, 548, 699, 799, 1118, 1151
MboI	GATC	7 cut(s)	16, 394, 546, 697, 797, 1116, 1149
MboII	GAAGA	8 cut(s)	28, 527, 995, 1279, 1297, 1406, 1409, 1448
MflI	RGATCY	2 cut(s)	394, 797
MhlI	GDGCHC	1 cut(s)	1051
MlsI	TGGCCA	1 cut(s)	60
MluCI	AATT	9 cut(s)	192, 212, 246, 438, 826, 835, 944, 1062, 1431
MluNI	TGGCCA	1 cut(s)	60
MlyI	GAGTC	1 cut(s)	1023
Mox20I	TGGCCA	1 cut(s)	60
MscI	TGGCCA	1 cut(s)	60
MseI	TTAA	4 cut(s)	663, 834, 1421, 1442
Msp20I	TGGCCA	1 cut(s)	60
MspI	CCGG	4 cut(s)	686, 743, 1160, 1167
MspR9I	CCNGG	1 cut(s)	743
MwoI	GCNNNNNNNGC	6 cut(s)	263, 458, 929, 1085, 1229, 1385
NciI	CCSGG	1 cut(s)	743
NcoI	CCATGG	1 cut(s)	103
NdeII	GATC	7 cut(s)	16, 394, 546, 697, 797, 1116, 1149
NlaIV	GGNNCC	6 cut(s)	109, 846, 1050, 1087, 1143, 1231
NmuCI	GTSAC	4 cut(s)	1093, 1162, 1195, 1309
PagI	TCATGA	1 cut(s)	1457
PciSI	GCTCTTC	1 cut(s)	1262
PfeI	GAWTC	3 cut(s)	415, 509, 515
PkrI	GCNGC	3 cut(s)	24, 403, 942
PleI	GAGTC	1 cut(s)	1023
PmaCI	CACGTG	1 cut(s)	1155
PmlI	CACGTG	1 cut(s)	1155
PpsI	GAGTC	1 cut(s)	1023
Ppu21I	YACGTR	1 cut(s)	1155
PsiI	TTATAA	1 cut(s)	1037
PspCI	CACGTG	1 cut(s)	1155
PspEI	GGTNACC	1 cut(s)	1162
PspFI	CCCAGC	2 cut(s)	1044, 1136
PspN4I	GGNNCC	6 cut(s)	109, 846, 1050, 1087, 1143, 1231
PspPI	GGNCC	2 cut(s)	740, 1086
PsuI	RGATCY	2 cut(s)	394, 797
RsaI	GTAC	2 cut(s)	570, 813
RsaNI	GTAC	2 cut(s)	569, 812
SapI	GCTCTTC	1 cut(s)	1262
SaqAI	TTAA	4 cut(s)	663, 834, 1421, 1442
SatI	GCNGC	3 cut(s)	23, 402, 941
Sau3AI	GATC	7 cut(s)	16, 394, 546, 697, 797, 1116, 1149
Sau96I	GGNCC	2 cut(s)	740, 1086
SchI	GAGTC	1 cut(s)	1023
ScrFI	CCNGG	1 cut(s)	743
SduI	GDGCHC	1 cut(s)	1051
SfaNI	GCATC	1 cut(s)	632
SfcI	CTRYAG	2 cut(s)	390, 627
SmlI	CTYRAG	1 cut(s)	926
SmoI	CTYRAG	1 cut(s)	926
Sse9I	AATT	9 cut(s)	192, 212, 246, 438, 826, 835, 944, 1062, 1431
SsiI	CCGC	1 cut(s)	1104
StyD4I	CCNGG	1 cut(s)	741
StyI	CCWWGG	4 cut(s)	103, 419, 918, 1450
TaaI	ACNGT	2 cut(s)	374, 856
TaiI	ACGT	1 cut(s)	1157
TaqI	TCGA	1 cut(s)	1115
TasI	AATT	9 cut(s)	192, 212, 246, 438, 826, 835, 944, 1062, 1431
TatI	WGTACW	1 cut(s)	811
TfiI	GAWTC	3 cut(s)	415, 509, 515
Tru1I	TTAA	4 cut(s)	663, 834, 1421, 1442
Tru9I	TTAA	4 cut(s)	663, 834, 1421, 1442
TscAI	CASTG	2 cut(s)	362, 1285
TseFI	GTSAC	4 cut(s)	1093, 1162, 1195, 1309
TseI	GCWGC	3 cut(s)	22, 401, 940
Tsp45I	GTSAC	4 cut(s)	1093, 1162, 1195, 1309
TspDTI	ATGAA	9 cut(s)	296, 422, 492, 822, 839, 937, 1089, 1347, 1395
TspRI	CASTG	2 cut(s)	362, 1285
XapI	RAATTY	1 cut(s)	212
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.