Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002645

Physical Location & Seq

Genomic Coordinates Reverse (-)

66352120 .. 66356299

Gene Structure 4180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G038810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGTCCTCATCCCTTCTGCTTTGGGTGGAGTTCTTAATAGGGATAATATTTCATCACATGCTAGTTGCTGCAACTTCTGGAACTGGATTTGTTCTTGGAAGTGGCAGTGCCGTCGATTTTGCTGGACTTTGTTGGATATGTGTTGGTACCATGATGTTTGCAGCATCTGCTAACTCTTTAAATCAGGTGTTCGAGAAGTATAATGATGCCAAACTGAAGAGAACGATGCAAAGACCCCTACCTTCAGGACACATTACTAGGCCTCATGCAATTGCTAATATGCTGGCAGCTGGTCTTGATGCTTCCAATTTAATACTTTATGCATTTCTGTATACTCCATTAAAGCAAATTCACCCAGTAAATACATGGGTTGGCGCTGTTGTTGGTGCTATCCCACCACTTCTAGGGCACACGACATACTTCTGTTATGACGCCTCCTCAGATTCTTTTGGATGCCTTAAGAAAGGCATTCTTGACCATAGAAGCAGTATGCTTGATGCAGCTGCTATCAAGAGGTTTCTGGTGAGGAACATTGTTGAGCAAGCTGCTGTTAGGGATGTCCAGGAGGCTTGTGTTTATGAAGGCGCCGGAGCTTGGGAAGTGCCTGACAAATGGTTTTTCTCTGAATCAGAGGATCAGCCTAGGCCTAGCGCACCAGGTGGACCTGGTCAGGCTCCACGCCCTGCCGCTGGAGTGGCAACTGCCCGTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0015980 GO:0016740 GO:0016765 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00190 ko00860 ko01100 ko01110 ko04714 map00190 map00860 map01100 map01110 map04714

Pfam Domains

Protein Families

UbiA

Protein Analysis

237

Amino Acids

25.47

Weight (kDa)

7.04

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UbiA	PF01040	25 - 97	3.8e-14	UbiA prenyltransferase family
UbiA	PF01040	91 - 137	5.1e-09	UbiA prenyltransferase family
Ribosomal_S26e	PF01283	168 - 202	2.2e-07	Ribosomal protein S26e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44520
fragaria_vesca	FvH4_2g12720 FvH4_2g12720
malus_domestica	MD08G1235300.v1.1 MD15G1426600.v1.1
prunus_persica	Prupe.1G571600_v2.0.a1
pyrus_communis	pycom08g20360 pycom15g37750 pycom15g37820 pycom15g37850
rosa_chinensis	RchiOBHm_Chr6g0271171 RchiOBHm_Chr6g0273481 RchiOBHm_Chr7g0200821
rosa_laevigata	RLG00000007702 RLG00000013613 RLG00000030224
rosa_multiflora	Rmu_sc0000367.1_g000112 Rmu_sc0004127.1_g000003 Rmu_sc0005891.1_g000033 Rmu_sc0010380.1_g000010 Rmu_sc0010380.1_g000011
rosa_roxburghii	Rroxscaffold_166G00440760 Rroxscaffold_4G00302880 Rroxscaffold_6G00423080 Rroxscaffold_7G00195280
rosa_rugosa	Rorug03G0044000 Rorug06G0075700 Rorug06G0075800
rosa_samantha	Rh4DG151900 Rh6AG190400 Rh6BG193900 Rh6CG179300 Rh6CG193400 Rh6DG171000 Rh6DG185000 Rh7DG191800
rosa_wichuraiana	Rw0G020450 Rw1G038810 Rw6G016660 Rw7G013720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	146
AccB1I	GGYRCC	2 cut(s)	146, 584
AccI	GTMKAC	1 cut(s)	332
AciI	CCGC	1 cut(s)	687
AclWI	GGATC	1 cut(s)	642
AcsI	RAATTY	1 cut(s)	348
AcuI	CTGAAG	2 cut(s)	228, 236
AcyI	GRCGYC	2 cut(s)	432, 585
AdeI	CACNNNGTG	1 cut(s)	659
AfaI	GTAC	1 cut(s)	148
AfiI	CCNNNNNNNGG	3 cut(s)	404, 594, 689
AflII	CTTAAG	1 cut(s)	458
AjnI	CCWGG	3 cut(s)	561, 655, 664
AluBI	AGCT	4 cut(s)	290, 503, 545, 593
AluI	AGCT	4 cut(s)	290, 503, 545, 593
AlwI	GGATC	1 cut(s)	642
AlwNI	CAGNNNCTG	1 cut(s)	167
AoxI	GGCC	2 cut(s)	260, 644
ApeKI	GCWGC	6 cut(s)	68, 161, 287, 500, 503, 545
ApoI	RAATTY	1 cut(s)	348
Asp718I	GGTACC	1 cut(s)	146
AspA2I	CCTAGG	1 cut(s)	641
AspLEI	GCGC	3 cut(s)	377, 587, 653
AspS9I	GGNCC	1 cut(s)	662
AsuHPI	GGTGA	2 cut(s)	344, 535
AvaII	GGWCC	1 cut(s)	662
AvrII	CCTAGG	1 cut(s)	641
BaeGI	GKGCMC	1 cut(s)	411
BanI	GGYRCC	2 cut(s)	146, 584
BbvI	GCAGC	6 cut(s)	55, 173, 299, 490, 512, 532
BceAI	ACGGC	1 cut(s)	95
BcgI	CGANNNNNNTGC	2 cut(s)	94, 128
BciT130I	CCWGG	3 cut(s)	563, 657, 666
BfaI	CTAG	5 cut(s)	62, 258, 404, 642, 648
BfoI	RGCGCY	2 cut(s)	378, 588
BfrI	CTTAAG	1 cut(s)	458
BisI	GCNGC	7 cut(s)	69, 162, 288, 501, 504, 546, 687
BlnI	CCTAGG	1 cut(s)	641
BlsI	GCNGC	7 cut(s)	70, 163, 289, 502, 505, 547, 688
Bme1390I	CCNGG	3 cut(s)	563, 657, 666
Bme18I	GGWCC	1 cut(s)	662
BmgT120I	GGNCC	1 cut(s)	662
BmiI	GGNNCC	3 cut(s)	148, 586, 675
BmrFI	CCNGG	3 cut(s)	563, 657, 666
BmrI	ACTGGG	1 cut(s)	350
BmsI	GCATC	6 cut(s)	173, 196, 216, 289, 443, 487
BmuI	ACTGGG	1 cut(s)	350
BpmI	CTGGAG	1 cut(s)	711
BsaHI	GRCGYC	2 cut(s)	432, 585
BsaJI	CCNNGG	1 cut(s)	641
Bsc4I	CCNNNNNNNGG	3 cut(s)	404, 594, 689
Bse1I	ACTGG	2 cut(s)	88, 356
BseBI	CCWGG	3 cut(s)	563, 657, 666
BseDI	CCNNGG	1 cut(s)	641
BseGI	GGATG	3 cut(s)	8, 458, 562
BseLI	CCNNNNNNNGG	3 cut(s)	404, 594, 689
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	2 cut(s)	88, 356
BseRI	GAGGAG	1 cut(s)	427
BseSI	GKGCMC	1 cut(s)	411
BseXI	GCAGC	6 cut(s)	55, 173, 299, 490, 512, 532
BshFI	GGCC	2 cut(s)	262, 646
BshNI	GGYRCC	2 cut(s)	146, 584
BsiSI	CCGG	1 cut(s)	588
BslI	CCNNNNNNNGG	3 cut(s)	404, 594, 689
BsmI	GAATGC	1 cut(s)	468
BsnI	GGCC	2 cut(s)	262, 646
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp143I	GATC	1 cut(s)	634
BspACI	CCGC	1 cut(s)	687
BspANI	GGCC	2 cut(s)	262, 646
BspCNI	CTCAG	1 cut(s)	452
BspLI	GGNNCC	3 cut(s)	148, 586, 675
BspPI	GGATC	1 cut(s)	642
BspT107I	GGYRCC	2 cut(s)	146, 584
BspTI	CTTAAG	1 cut(s)	458
BsrI	ACTGG	2 cut(s)	88, 356
BssECI	CCNNGG	1 cut(s)	641
BssMI	GATC	1 cut(s)	634
BssNAI	GTATAC	1 cut(s)	333
BssNI	GRCGYC	2 cut(s)	432, 585
BssT1I	CCWWGG	1 cut(s)	641
Bst1107I	GTATAC	1 cut(s)	333
Bst2UI	CCWGG	3 cut(s)	563, 657, 666
Bst6I	CTCTTC	1 cut(s)	212
BstACI	GRCGYC	2 cut(s)	432, 585
BstAFI	CTTAAG	1 cut(s)	458
BstAPI	GCANNNNNTGC	1 cut(s)	167
BstC8I	GCNNGC	2 cut(s)	285, 543
BstDEI	CTNAG	1 cut(s)	439
BstF5I	GGATG	3 cut(s)	8, 458, 562
BstH2I	RGCGCY	2 cut(s)	378, 588
BstHHI	GCGC	3 cut(s)	377, 587, 653
BstKTI	GATC	1 cut(s)	637
BstMBI	GATC	1 cut(s)	634
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 695
BstNI	CCWGG	3 cut(s)	563, 657, 666
BstNSI	RCATGY	1 cut(s)	61
BstSCI	CCNGG	3 cut(s)	561, 655, 664
BstSLI	GKGCMC	1 cut(s)	411
BstV1I	GCAGC	6 cut(s)	55, 173, 299, 490, 512, 532
BstZ17I	GTATAC	1 cut(s)	333
BsuRI	GGCC	2 cut(s)	262, 646
BtsCI	GGATG	3 cut(s)	8, 458, 562
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	112
Cac8I	GCNNGC	2 cut(s)	285, 543
CaiI	CAGNNNCTG	1 cut(s)	167
CfoI	GCGC	3 cut(s)	377, 587, 653
Cfr13I	GGNCC	1 cut(s)	662
CseI	GACGC	1 cut(s)	440
CsiI	ACCWGGT	2 cut(s)	655, 664
Csp6I	GTAC	1 cut(s)	147
CviAII	CATG	5 cut(s)	58, 151, 266, 366, 711
CviJI	RGCY	9 cut(s)	262, 290, 503, 545, 569, 593, 640, 646, 674
CviKI_1	RGCY	9 cut(s)	262, 290, 503, 545, 569, 593, 640, 646, 674
CviQI	GTAC	1 cut(s)	147
DdeI	CTNAG	1 cut(s)	439
DinI	GGCGCC	1 cut(s)	586
DpnI	GATC	1 cut(s)	636
DpnII	GATC	1 cut(s)	634
DraI	TTTAAA	1 cut(s)	180
DraIII	CACNNNGTG	1 cut(s)	659
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	641
Eco147I	AGGCCT	2 cut(s)	262, 646
Eco47I	GGWCC	1 cut(s)	662
Eco57I	CTGAAG	2 cut(s)	228, 236
EcoRII	CCWGG	3 cut(s)	561, 655, 664
EcoT14I	CCWWGG	1 cut(s)	641
EcoT22I	ATGCAT	1 cut(s)	325
EgeI	GGCGCC	1 cut(s)	586
EheI	GGCGCC	1 cut(s)	586
ErhI	CCWWGG	1 cut(s)	641
FaeI	CATG	5 cut(s)	61, 154, 269, 369, 714
FalI	AAGNNNNNCTT	2 cut(s)	456, 488
FatI	CATG	5 cut(s)	57, 150, 265, 365, 710
FblI	GTMKAC	1 cut(s)	332
Fnu4HI	GCNGC	7 cut(s)	69, 162, 288, 501, 504, 546, 687
FokI	GGATG	2 cut(s)	465, 569
Fsp4HI	GCNGC	7 cut(s)	69, 162, 288, 501, 504, 546, 687
FspBI	CTAG	5 cut(s)	62, 258, 404, 642, 648
GlaI	GCGC	3 cut(s)	376, 586, 652
GluI	GCNGC	7 cut(s)	69, 162, 288, 501, 504, 546, 687
GsuI	CTGGAG	1 cut(s)	711
HaeII	RGCGCY	2 cut(s)	378, 588
HaeIII	GGCC	2 cut(s)	262, 646
HapII	CCGG	1 cut(s)	588
HgaI	GACGC	1 cut(s)	440
HhaI	GCGC	3 cut(s)	377, 587, 653
Hin1I	GRCGYC	2 cut(s)	432, 585
Hin1II	CATG	5 cut(s)	61, 154, 269, 369, 714
Hin6I	GCGC	3 cut(s)	375, 585, 651
HinP1I	GCGC	3 cut(s)	375, 585, 651
HinfI	GANTC	2 cut(s)	443, 626
HpaII	CCGG	1 cut(s)	588
HphI	GGTGA	2 cut(s)	344, 535
Hpy166II	GTNNAC	2 cut(s)	333, 662
Hpy188I	TCNGA	3 cut(s)	442, 625, 631
Hpy188III	TCNNGA	6 cut(s)	78, 193, 246, 296, 473, 511
Hpy8I	GTNNAC	2 cut(s)	333, 662
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	3 cut(s)	23, 252, 575
HpyCH4V	TGCA	6 cut(s)	71, 161, 229, 269, 323, 500
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 695
HpyF3I	CTNAG	1 cut(s)	439
Hsp92I	GRCGYC	2 cut(s)	432, 585
Hsp92II	CATG	5 cut(s)	61, 154, 269, 369, 714
HspAI	GCGC	3 cut(s)	375, 585, 651
KasI	GGCGCC	1 cut(s)	584
KpnI	GGTACC	1 cut(s)	150
Kzo9I	GATC	1 cut(s)	634
LmnI	GCTCC	2 cut(s)	590, 679
Lsp1109I	GCAGC	6 cut(s)	55, 173, 299, 490, 512, 532
LweI	GCATC	6 cut(s)	173, 196, 216, 289, 443, 487
MabI	ACCWGGT	2 cut(s)	655, 664
MaeI	CTAG	5 cut(s)	62, 258, 404, 642, 648
MalI	GATC	1 cut(s)	636
MboI	GATC	1 cut(s)	634
MboII	GAAGA	1 cut(s)	229
MfeI	CAATTG	1 cut(s)	270
MhlI	GDGCHC	1 cut(s)	411
MluCI	AATT	3 cut(s)	270, 307, 348
Mly113I	GGCGCC	1 cut(s)	585
MmeI	TCCRAC	1 cut(s)	113
MnlI	CCTC	8 cut(s)	16, 273, 445, 448, 507, 519, 559, 625
Mph1103I	ATGCAT	1 cut(s)	325
MseI	TTAA	5 cut(s)	35, 179, 311, 341, 459
MspA1I	CMGCKG	3 cut(s)	290, 503, 689
MspCI	CTTAAG	1 cut(s)	458
MspI	CCGG	1 cut(s)	588
MspR9I	CCNGG	3 cut(s)	563, 657, 666
MunI	CAATTG	1 cut(s)	270
Mva1269I	GAATGC	1 cut(s)	468
MvaI	CCWGG	3 cut(s)	563, 657, 666
MwoI	GCNNNNNNNGC	2 cut(s)	167, 695
NarI	GGCGCC	1 cut(s)	585
NdeII	GATC	1 cut(s)	634
NlaIII	CATG	5 cut(s)	61, 154, 269, 369, 714
NlaIV	GGNNCC	3 cut(s)	148, 586, 675
NsiI	ATGCAT	1 cut(s)	325
NspI	RCATGY	1 cut(s)	61
PceI	AGGCCT	2 cut(s)	262, 646
PctI	GAATGC	1 cut(s)	468
PfeI	GAWTC	2 cut(s)	443, 626
PflFI	GACNNNGTC	1 cut(s)	666
PfoI	TCCNGGA	1 cut(s)	561
PkrI	GCNGC	7 cut(s)	70, 163, 289, 502, 505, 547, 688
PluTI	GGCGCC	1 cut(s)	588
Psp6I	CCWGG	3 cut(s)	561, 655, 664
PspGI	CCWGG	3 cut(s)	561, 655, 664
PspN4I	GGNNCC	3 cut(s)	148, 586, 675
PspPI	GGNCC	1 cut(s)	662
PstNI	CAGNNNCTG	1 cut(s)	167
PsyI	GACNNNGTC	1 cut(s)	666
PvuII	CAGCTG	2 cut(s)	290, 503
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
SaqAI	TTAA	5 cut(s)	35, 179, 311, 341, 459
SatI	GCNGC	7 cut(s)	69, 162, 288, 501, 504, 546, 687
Sau3AI	GATC	1 cut(s)	634
Sau96I	GGNCC	1 cut(s)	662
ScrFI	CCNGG	3 cut(s)	563, 657, 666
SduI	GDGCHC	1 cut(s)	411
SetI	ASST	9 cut(s)	189, 244, 292, 505, 518, 547, 595, 661, 667
SexAI	ACCWGGT	2 cut(s)	655, 664
SfaNI	GCATC	6 cut(s)	173, 196, 216, 289, 443, 487
SfoI	GGCGCC	1 cut(s)	586
SinI	GGWCC	1 cut(s)	662
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	3 cut(s)	270, 307, 348
SseBI	AGGCCT	2 cut(s)	262, 646
SsiI	CCGC	1 cut(s)	687
SspDI	GGCGCC	1 cut(s)	584
SspI	AATATT	1 cut(s)	48
SspMI	CTAG	5 cut(s)	62, 258, 404, 642, 648
StuI	AGGCCT	2 cut(s)	262, 646
StyD4I	CCNGG	3 cut(s)	561, 655, 664
StyI	CCWWGG	1 cut(s)	641
TaqI	TCGA	2 cut(s)	114, 192
TasI	AATT	3 cut(s)	270, 307, 348
TauI	GCSGC	1 cut(s)	689
TfiI	GAWTC	2 cut(s)	443, 626
Tru1I	TTAA	5 cut(s)	35, 179, 311, 341, 459
Tru9I	TTAA	5 cut(s)	35, 179, 311, 341, 459
TscAI	CASTG	1 cut(s)	112
TseI	GCWGC	6 cut(s)	68, 161, 287, 500, 503, 545
TspDTI	ATGAA	2 cut(s)	41, 594
TspRI	CASTG	1 cut(s)	112
Tth111I	GACNNNGTC	1 cut(s)	666
Vha464I	CTTAAG	1 cut(s)	458
VpaK11BI	GGWCC	1 cut(s)	662
XapI	RAATTY	1 cut(s)	348
XceI	RCATGY	1 cut(s)	61
XcmI	CCANNNNNNNNNTGG	1 cut(s)	363
XmaJI	CCTAGG	1 cut(s)	641
XmiI	GTMKAC	1 cut(s)	332
XspI	CTAG	5 cut(s)	62, 258, 404, 642, 648
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.