AT2G47790

WD repeat-containing protein 89 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0009953
Physical Location & Seq
Reverse (-)
19570964 .. 19573027
2064 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G47790.1

Sequence Viewer

Length: 1179 bp
ATGGAAGAAGTGTCGTCGGAGATGGAAGTGGAGGTTCAAAATCGTCAGCTTTCGGATTCTTCTCCGGCTCAAAACGTGAAGAAATTTGGGCTCAAGAACTCTATTCAGACCAACTTCGGCTCTGACTACGTCTTCCAGATTGTCCCAAAAATCGATTGGACAGCAATCGCGGTTTCCTTATCAACCAACACCGTCAAGCTTTACTCGCCGGTGACTGGTCAGTACTACGGCGAATGTAAAGGCCACTCCGATACCGTCAATCAGATTGCGTTTTCCTCCGACTCGGCGGCGTCTCCTCACGTTTTGCACTCTTGTTCCTCCGATGGTACCATTAGATCTTGGGACACTCGAAGTTTCCAACAGGTTTCGCGTATTGATACTGGGAATGATCAGGAGATTTTCAGCTTCTCCTATGGAGGTGCTGCAGATAATCTTCTGGCTGGTGGATGCAAAGAGCAGGTTCTTTTGTGGGACTGGAGAAACTCAAAGCAAGTTGCTTGTTTAGAGGAATCCCACATGGACGACGTCACTCAGGTACACTTTGTTCCTAACAAGCCCAACAAGCTTCTTTCCGCTTCCGTGGATGGATTGATATGTCTTTTTAACACTGAAGGTGATATCAATGACGATGATCATCTGGAATCTGTCATCAACGTGGGAACTTCAATTGGCAAAATAGGTTTCCTCGGAGATGGCTATAAAAAGCTCTGGTGTCTCACTCATATAGAAACTCTAAGTATTTGGAATTGGGAAGACGGAAGCTGTGAAGTCAACCTAGAGAAAGCTCGGGAACTCGCATCAGATAGTTGGACTCAAGATAATGTTGATTATTTTGTTGATTGTCATTGTCCAGGAGGTGAAGATTTATGGGTGATCGGTGGAACGTGCGCAGGAACCGTTGGTTATTTTCCGGTGAACTACAAACAGCCTGGATCAATCGGTACCGCTGAAGCTATTCTTGGTGGAGGTCACATAGATGTAGTAAGGAGCGTTCTGCAGATGCCAGGCGAGTATGGAGGAGCTGCAGGGTTATTTGGATGGACTGGGGGTGAAGATGGGCGACTATGTTGCTGGAAGTCGGATGAGGATGCTACCGAGATTAACCGGTCTTGGACTTCAAGTGAGTTGGTTGTTAAGCCGCCAAGGAACCGCAAGAAAAACAGACACTCTCCTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0010029 GO:0040008 GO:0048580 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:1900140 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

392

Amino Acids

43.07

Weight (kDa)

4.76

Isoelectric Point (pI)

43.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 35 - 230 3.6e-14 CDC20/Fizzy WD40 domain
WD40_WDHD1_1st PF24817 42 - 203 4.3e-09 WDHD1 first WD40 domain
Beta-prop_WDR3_1st PF25173 43 - 126 1.4e-06 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 54 - 204 3.8e-23 WDR5 beta-propeller domain
WDR55 PF24796 54 - 251 5.6e-11 WDR55
Beta-prop_WDR3_2nd PF25172 56 - 158 2.1e-08 WDR3 second beta-propeller domain
Beta-prop_THOC3 PF25174 57 - 165 5.4e-13 THOC3 beta-propeller domain
WD40_Prp19 PF24814 63 - 131 8e-06 Prp19 WD40 domain
Beta-prop_EML_2 PF23414 101 - 271 1e-07 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st PF25173 102 - 204 2.2e-11 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 143 - 275 5.8e-07 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 528
Acc16I TGCGCA 1 cut(s) 889
Acc36I ACCTGC 1 cut(s) 448
Acc65I GGTACC 2 cut(s) 326, 941
AccB1I GGYRCC 2 cut(s) 326, 941
AccII CGCG 2 cut(s) 170, 370
AciI CCGC 6 cut(s) 170, 287, 573, 945, 1139, 1150
AclWI GGATC 1 cut(s) 940
AcsI RAATTY 1 cut(s) 83
AcuI CTGAAG 2 cut(s) 630, 969
AcyI GRCGYC 2 cut(s) 290, 525
AfaI GTAC 4 cut(s) 224, 328, 537, 943
AfiI CCNNNNNNNGG 1 cut(s) 215
AgeI ACCGGT 1 cut(s) 1104
AgsI TTSAA 3 cut(s) 38, 666, 1119
AjnI CCWGG 3 cut(s) 850, 928, 1003
AjuI GAANNNNNNNTTGG 2 cut(s) 942, 974
AluBI AGCT 9 cut(s) 49, 199, 405, 565, 706, 762, 785, 953, 1022
AluI AGCT 9 cut(s) 49, 199, 405, 565, 706, 762, 785, 953, 1022
Alw26I GTCTC 2 cut(s) 297, 719
AlwI GGATC 1 cut(s) 940
Ama87I CYCGRG 1 cut(s) 786
AoxI GGCC 1 cut(s) 241
ApeKI GCWGC 2 cut(s) 422, 1022
ApoI RAATTY 1 cut(s) 83
AsiGI ACCGGT 1 cut(s) 1104
Asp700I GAANNNNTTC 1 cut(s) 954
Asp718I GGTACC 2 cut(s) 326, 941
AspLEI GCGC 1 cut(s) 890
AsuHPI GGTGA 6 cut(s) 223, 626, 869, 883, 925, 1061
AvaI CYCGRG 1 cut(s) 786
BanI GGYRCC 2 cut(s) 326, 941
BanII GRGCYC 1 cut(s) 93
BbsI GAAGAC 2 cut(s) 124, 759
BbvI GCAGC 2 cut(s) 409, 1009
BccI CCATC 6 cut(s) 16, 317, 578, 686, 1032, 1049
BceAI ACGGC 1 cut(s) 244
BcgI CGANNNNNNTGC 2 cut(s) 1050, 1084
BciT130I CCWGG 3 cut(s) 852, 930, 1005
BclI TGATCA 2 cut(s) 388, 631
BcoDI GTCTC 2 cut(s) 297, 719
BfaI CTAG 2 cut(s) 776, 1177
BfmI CTRYAG 3 cut(s) 423, 995, 1023
BfuAI ACCTGC 1 cut(s) 448
BglII AGATCT 1 cut(s) 335
BisI GCNGC 4 cut(s) 288, 423, 1023, 1139
BlsI GCNGC 4 cut(s) 289, 424, 1024, 1140
BmcAI AGTACT 1 cut(s) 224
Bme1390I CCNGG 3 cut(s) 852, 930, 1005
BmeT110I CYCGRG 1 cut(s) 786
BmiI GGNNCC 4 cut(s) 328, 895, 943, 1148
BmrFI CCNGG 3 cut(s) 852, 930, 1005
BmrI ACTGGG 2 cut(s) 390, 1053
BmsI GCATC 4 cut(s) 437, 806, 990, 1078
BmuI ACTGGG 2 cut(s) 390, 1053
BpiI GAAGAC 2 cut(s) 124, 759
BpmI CTGGAG 1 cut(s) 496
BpuEI CTTGAG 2 cut(s) 77, 798
Bsa29I ATCGAT 1 cut(s) 153
BsaBI GATNNNNATC 1 cut(s) 633
BsaHI GRCGYC 2 cut(s) 290, 525
BsaJI CCNNGG 3 cut(s) 579, 685, 1142
BsaWI WCCGGW 2 cut(s) 910, 1104
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse118I RCCGGY 2 cut(s) 208, 1104
Bse1I ACTGG 4 cut(s) 220, 385, 479, 1048
Bse8I GATNNNNATC 1 cut(s) 633
BseBI CCWGG 3 cut(s) 852, 930, 1005
BseCI ATCGAT 1 cut(s) 153
BseDI CCNNGG 3 cut(s) 579, 685, 1142
BseGI GGATG 5 cut(s) 452, 589, 1043, 1087, 1093
BseJI GATNNNNATC 1 cut(s) 633
BseLI CCNNNNNNNGG 1 cut(s) 215
BseMII CTCAG 1 cut(s) 545
BseNI ACTGG 4 cut(s) 220, 385, 479, 1048
BseRI GAGGAG 2 cut(s) 285, 1032
BseXI GCAGC 2 cut(s) 409, 1009
Bsh1236I CGCG 2 cut(s) 170, 370
BshFI GGCC 1 cut(s) 243
BshNI GGYRCC 2 cut(s) 326, 941
BshTI ACCGGT 1 cut(s) 1104
BshVI ATCGAT 1 cut(s) 153
BsiHKCI CYCGRG 1 cut(s) 786
BsiSI CCGG 4 cut(s) 65, 209, 911, 1105
BslFI GGGAC 3 cut(s) 128, 356, 485
BslI CCNNNNNNNGG 1 cut(s) 215
BsmAI GTCTC 2 cut(s) 297, 719
BsmBI CGTCTC 1 cut(s) 297
BsmFI GGGAC 3 cut(s) 128, 356, 485
BsnI GGCC 1 cut(s) 243
BsoBI CYCGRG 1 cut(s) 786
Bsp1286I GDGCHC 1 cut(s) 93
Bsp143I GATC 5 cut(s) 335, 388, 631, 873, 932
BspACI CCGC 6 cut(s) 170, 287, 573, 945, 1139, 1150
BspANI GGCC 1 cut(s) 243
BspCNI CTCAG 1 cut(s) 544
BspDI ATCGAT 1 cut(s) 153
BspFNI CGCG 2 cut(s) 170, 370
BspLI GGNNCC 4 cut(s) 328, 895, 943, 1148
BspMAI CTGCAG 3 cut(s) 427, 999, 1027
BspMI ACCTGC 1 cut(s) 448
BspPI GGATC 1 cut(s) 940
BspT107I GGYRCC 2 cut(s) 326, 941
BsrFI RCCGGY 2 cut(s) 208, 1104
BsrI ACTGG 4 cut(s) 220, 385, 479, 1048
BssAI RCCGGY 2 cut(s) 208, 1104
BssECI CCNNGG 3 cut(s) 579, 685, 1142
BssMI GATC 5 cut(s) 335, 388, 631, 873, 932
BssNI GRCGYC 2 cut(s) 290, 525
BssT1I CCWWGG 1 cut(s) 1142
Bst2UI CCWGG 3 cut(s) 852, 930, 1005
Bst4CI ACNGT 3 cut(s) 193, 256, 898
BstACI GRCGYC 2 cut(s) 290, 525
BstDEI CTNAG 2 cut(s) 531, 734
BstDSI CCRYGG 1 cut(s) 579
BstF5I GGATG 5 cut(s) 452, 589, 1043, 1087, 1093
BstFNI CGCG 2 cut(s) 170, 370
BstHHI GCGC 1 cut(s) 890
BstKTI GATC 5 cut(s) 338, 391, 634, 876, 935
BstMAI GTCTC 2 cut(s) 297, 719
BstMBI GATC 5 cut(s) 335, 388, 631, 873, 932
BstMWI GCNNNNNNNGC 2 cut(s) 205, 562
BstNI CCWGG 3 cut(s) 852, 930, 1005
BstSCI CCNGG 3 cut(s) 850, 928, 1003
BstSFI CTRYAG 3 cut(s) 423, 995, 1023
BstUI CGCG 2 cut(s) 170, 370
BstV1I GCAGC 2 cut(s) 409, 1009
BstV2I GAAGAC 2 cut(s) 124, 759
BstX2I RGATCY 1 cut(s) 335
BstYI RGATCY 1 cut(s) 335
Bsu15I ATCGAT 1 cut(s) 153
BsuRI GGCC 1 cut(s) 243
BsuTUI ATCGAT 1 cut(s) 153
BtgI CCRYGG 1 cut(s) 579
BtsCI GGATG 5 cut(s) 452, 589, 1043, 1087, 1093
BtsIMutI CAGTG 1 cut(s) 606
BveI ACCTGC 1 cut(s) 448
CfoI GCGC 1 cut(s) 890
Cfr10I RCCGGY 2 cut(s) 208, 1104
ClaI ATCGAT 1 cut(s) 153
CseI GACGC 1 cut(s) 279
Csp6I GTAC 4 cut(s) 223, 327, 536, 942
CspAI ACCGGT 1 cut(s) 1104
CviAII CATG 1 cut(s) 517
CviQI GTAC 4 cut(s) 223, 327, 536, 942
DdeI CTNAG 2 cut(s) 531, 734
DpnI GATC 5 cut(s) 337, 390, 633, 875, 934
DpnII GATC 5 cut(s) 335, 388, 631, 873, 932
Eco130I CCWWGG 1 cut(s) 1142
Eco24I GRGCYC 1 cut(s) 93
Eco32I GATATC 1 cut(s) 619
Eco57I CTGAAG 2 cut(s) 630, 969
Eco88I CYCGRG 1 cut(s) 786
EcoRII CCWGG 3 cut(s) 850, 928, 1003
EcoRV GATATC 1 cut(s) 619
EcoT14I CCWWGG 1 cut(s) 1142
EcoT38I GRGCYC 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 1142
Esp3I CGTCTC 1 cut(s) 297
FaeI CATG 1 cut(s) 520
FalI AAGNNNNNCTT 2 cut(s) 942, 974
FaqI GGGAC 3 cut(s) 128, 356, 485
FatI CATG 1 cut(s) 516
FbaI TGATCA 2 cut(s) 388, 631
Fnu4HI GCNGC 4 cut(s) 288, 423, 1023, 1139
FokI GGATG 5 cut(s) 459, 596, 1050, 1094, 1100
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 4 cut(s) 288, 423, 1023, 1139
FspBI CTAG 2 cut(s) 776, 1177
FspI TGCGCA 1 cut(s) 889
GlaI GCGC 1 cut(s) 889
GluI GCNGC 4 cut(s) 288, 423, 1023, 1139
GsuI CTGGAG 1 cut(s) 496
HaeIII GGCC 1 cut(s) 243
HapII CCGG 4 cut(s) 65, 209, 911, 1105
HgaI GACGC 1 cut(s) 279
HhaI GCGC 1 cut(s) 890
Hin1I GRCGYC 2 cut(s) 290, 525
Hin1II CATG 1 cut(s) 520
Hin6I GCGC 1 cut(s) 888
HinP1I GCGC 1 cut(s) 888
HincII GTYRAC 1 cut(s) 772
HindII GTYRAC 1 cut(s) 772
HindIII AAGCTT 2 cut(s) 197, 563
HinfI GANTC 5 cut(s) 56, 281, 509, 641, 811
HpaII CCGG 4 cut(s) 65, 209, 911, 1105
HphI GGTGA 6 cut(s) 223, 626, 869, 883, 925, 1061
Hpy166II GTNNAC 3 cut(s) 538, 772, 916
Hpy188III TCNNGA 6 cut(s) 94, 136, 392, 638, 788, 815
Hpy8I GTNNAC 3 cut(s) 538, 772, 916
Hpy99I CGWCG 2 cut(s) 19, 527
HpyAV CCTTC 1 cut(s) 605
HpyCH4III ACNGT 3 cut(s) 193, 256, 898
HpyCH4IV ACGT 6 cut(s) 75, 129, 300, 525, 654, 884
HpyCH4V TGCA 5 cut(s) 307, 425, 450, 997, 1025
HpyF10VI GCNNNNNNNGC 2 cut(s) 205, 562
HpyF3I CTNAG 2 cut(s) 531, 734
HpySE526I ACGT 6 cut(s) 75, 129, 300, 525, 654, 884
Hsp92I GRCGYC 2 cut(s) 290, 525
Hsp92II CATG 1 cut(s) 520
HspAI GCGC 1 cut(s) 888
KpnI GGTACC 2 cut(s) 330, 945
Ksp22I TGATCA 2 cut(s) 388, 631
Kzo9I GATC 5 cut(s) 335, 388, 631, 873, 932
LmnI GCTCC 2 cut(s) 987, 1019
Lsp1109I GCAGC 2 cut(s) 409, 1009
LweI GCATC 4 cut(s) 437, 806, 990, 1078
MaeI CTAG 2 cut(s) 776, 1177
MaeII ACGT 6 cut(s) 75, 129, 300, 525, 654, 884
MaeIII GTNAC 3 cut(s) 211, 526, 968
MalI GATC 5 cut(s) 337, 390, 633, 875, 934
MboI GATC 5 cut(s) 335, 388, 631, 873, 932
MboII GAAGA 8 cut(s) 17, 51, 91, 124, 425, 764, 872, 1064
MfeI CAATTG 1 cut(s) 666
MflI RGATCY 1 cut(s) 335
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 3 cut(s) 83, 666, 745
MlyI GAGTC 2 cut(s) 275, 805
MmeI TCCRAC 4 cut(s) 303, 382, 788, 1059
MroXI GAANNNNTTC 1 cut(s) 954
MseI TTAA 3 cut(s) 603, 1101, 1134
MslI CAYNNNNRTG 2 cut(s) 653, 975
MspA1I CMGCKG 1 cut(s) 947
MspI CCGG 4 cut(s) 65, 209, 911, 1105
MspR9I CCNGG 3 cut(s) 852, 930, 1005
MunI CAATTG 1 cut(s) 666
MvaI CCWGG 3 cut(s) 852, 930, 1005
MvnI CGCG 2 cut(s) 170, 370
MwoI GCNNNNNNNGC 2 cut(s) 205, 562
NdeII GATC 5 cut(s) 335, 388, 631, 873, 932
NlaIII CATG 1 cut(s) 520
NlaIV GGNNCC 4 cut(s) 328, 895, 943, 1148
NmeAIII GCCGAG 1 cut(s) 263
NmuCI GTSAC 3 cut(s) 211, 526, 968
NsbI TGCGCA 1 cut(s) 889
PdmI GAANNNNTTC 1 cut(s) 954
PfeI GAWTC 3 cut(s) 56, 509, 641
PflFI GACNNNGTC 2 cut(s) 128, 524
PfoI TCCNGGA 1 cut(s) 850
PinAI ACCGGT 1 cut(s) 1104
PkrI GCNGC 4 cut(s) 289, 424, 1024, 1140
PleI GAGTC 2 cut(s) 275, 805
PpsI GAGTC 2 cut(s) 275, 805
Psp6I CCWGG 3 cut(s) 850, 928, 1003
PspGI CCWGG 3 cut(s) 850, 928, 1003
PspN4I GGNNCC 4 cut(s) 328, 895, 943, 1148
PsrI GAACNNNNNNTAC 4 cut(s) 528, 560, 975, 1007
PstI CTGCAG 3 cut(s) 427, 999, 1027
PsuI RGATCY 1 cut(s) 335
PsyI GACNNNGTC 2 cut(s) 128, 524
RsaI GTAC 4 cut(s) 224, 328, 537, 943
RsaNI GTAC 4 cut(s) 223, 327, 536, 942
RseI CAYNNNNRTG 2 cut(s) 653, 975
SaqAI TTAA 3 cut(s) 603, 1101, 1134
SatI GCNGC 4 cut(s) 288, 423, 1023, 1139
Sau3AI GATC 5 cut(s) 335, 388, 631, 873, 932
ScaI AGTACT 1 cut(s) 224
SchI GAGTC 2 cut(s) 275, 805
ScrFI CCNGG 3 cut(s) 852, 930, 1005
SduI GDGCHC 1 cut(s) 93
SfaNI GCATC 4 cut(s) 437, 806, 990, 1078
SfcI CTRYAG 3 cut(s) 423, 995, 1023
SgrAI CRCCGGYG 1 cut(s) 208
SmiMI CAYNNNNRTG 2 cut(s) 653, 975
SmlI CTYRAG 2 cut(s) 92, 813
SmoI CTYRAG 2 cut(s) 92, 813
Sse9I AATT 3 cut(s) 83, 666, 745
SsiI CCGC 6 cut(s) 170, 287, 573, 945, 1139, 1150
SspMI CTAG 2 cut(s) 776, 1177
StyD4I CCNGG 3 cut(s) 850, 928, 1003
StyI CCWWGG 1 cut(s) 1142
TaaI ACNGT 3 cut(s) 193, 256, 898
TaiI ACGT 6 cut(s) 78, 132, 303, 528, 657, 887
TaqI TCGA 2 cut(s) 153, 349
TasI AATT 3 cut(s) 83, 666, 745
TatI WGTACW 1 cut(s) 222
TauI GCSGC 2 cut(s) 290, 1141
TfiI GAWTC 3 cut(s) 56, 509, 641
Tru1I TTAA 3 cut(s) 603, 1101, 1134
Tru9I TTAA 3 cut(s) 603, 1101, 1134
TscAI CASTG 1 cut(s) 613
TseFI GTSAC 3 cut(s) 211, 526, 968
TseI GCWGC 2 cut(s) 422, 1022
Tsp45I GTSAC 3 cut(s) 211, 526, 968
TspGWI ACGGA 2 cut(s) 568, 771
TspRI CASTG 1 cut(s) 613
Tth111I GACNNNGTC 2 cut(s) 128, 524
XapI RAATTY 1 cut(s) 83
XcmI CCANNNNNNNNNTGG 1 cut(s) 153
XmnI GAANNNNTTC 1 cut(s) 954
XspI CTAG 2 cut(s) 776, 1177
ZraI GACGTC 1 cut(s) 526
ZrmI AGTACT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.