Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040923.1

Orthogroup ID

OG0009953

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 928

Gene Structure 927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040923.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 497 bp

atggaagccatggacttggatatggaatcgaaacctcaaccgcaagactcatccaagcgtttcggcctcaaaacctctatcccaaccaactttggagacgattacgtcttccaaattgtgcccaaggatgattggactgcaatggcggtgtcactgtcaaccaacgcagtgaagctctactcaccggtgactggtcagtactacggagagtgcaaaggccactctgcaactatcaatcaaatttcatttgcagacccatcatccccacatgttttgcactcctgctcttccgatggaaccattagactttgggactcccgcacgtttcaacaggtgtcatcttttcattccggttcgagtgaggagattttcagcttttcgtttggtggatcatctaataatcttctggccgcaggatgtaattctcagatactaatgtgggattggaggaacgacaaacaagtagcatgcttagaggactctcatgtggaagatgt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0010029 GO:0040008 GO:0048580 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:1900140 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

166

Amino Acids

18.36

Weight (kDa)

4.69

Isoelectric Point (pI)

51.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47790
fragaria_vesca	FvH4_2g25530 FvH4_2g25530
malus_domestica	MD03G1286100.v1.1 MD11G1306000.v1.1
prunus_persica	Prupe.8G259400_v2.0.a1 Prupe.8G259600_v2.0.a1
pyrus_communis	pycom11g26780
rosa_chinensis	RchiOBHm_Chr6g0293741 RchiOBHm_Chr6g0293751
rosa_laevigata	RLG00000011927
rosa_multiflora	Rmu_co8509229.1_g000002 Rmu_sc0005641.1_g000008 Rmu_sc0040923.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173930
rosa_rugosa	Rorug06G0237800
rosa_samantha	Rh6AG350600 Rh6BG358000 Rh6CG364900 Rh6DG351800
rosa_wichuraiana	Rw6G030530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	104
AciI	CCGC	4 cut(s)	41, 146, 319, 411
AclWI	GGATC	1 cut(s)	397
AcoI	YGGCCR	1 cut(s)	408
AcsI	RAATTY	1 cut(s)	240
AfaI	GTAC	1 cut(s)	200
AfiI	CCNNNNNNNGG	1 cut(s)	191
AflIII	ACRYGT	1 cut(s)	268
AgeI	ACCGGT	1 cut(s)	184
AgsI	TTSAA	1 cut(s)	329
AluBI	AGCT	2 cut(s)	175, 375
AluI	AGCT	2 cut(s)	175, 375
Alw26I	GTCTC	1 cut(s)	90
AlwI	GGATC	1 cut(s)	397
AoxI	GGCC	3 cut(s)	64, 217, 408
ApoI	RAATTY	1 cut(s)	240
AsiGI	ACCGGT	1 cut(s)	184
AsuHPI	GGTGA	2 cut(s)	174, 199
BaeGI	GKGCMC	1 cut(s)	123
BaeI	ACNNNNGTAYC	2 cut(s)	422, 455
BbsI	GAAGAC	1 cut(s)	100
BccI	CCATC	2 cut(s)	265, 287
BcoDI	GTCTC	1 cut(s)	90
BisI	GCNGC	1 cut(s)	411
BlsI	GCNGC	1 cut(s)	412
BmcAI	AGTACT	1 cut(s)	200
BmiI	GGNNCC	1 cut(s)	298
BpiI	GAAGAC	1 cut(s)	100
BsaJI	CCNNGG	2 cut(s)	9, 123
BsaWI	WCCGGW	2 cut(s)	184, 350
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse118I	RCCGGY	1 cut(s)	184
Bse1I	ACTGG	1 cut(s)	196
Bse3DI	GCAATG	1 cut(s)	147
BseDI	CCNNGG	2 cut(s)	9, 123
BseGI	GGATG	4 cut(s)	50, 133, 260, 422
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseMI	GCAATG	1 cut(s)	147
BseMII	CTCAG	1 cut(s)	440
BseNI	ACTGG	1 cut(s)	196
BseRI	GAGGAG	1 cut(s)	377
BseSI	GKGCMC	1 cut(s)	123
BshFI	GGCC	3 cut(s)	66, 219, 410
BshTI	ACCGGT	1 cut(s)	184
BsiSI	CCGG	2 cut(s)	185, 351
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	1 cut(s)	191
BsmAI	GTCTC	1 cut(s)	90
BsmBI	CGTCTC	1 cut(s)	90
BsmFI	GGGAC	1 cut(s)	326
BsnI	GGCC	3 cut(s)	66, 219, 410
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	1 cut(s)	389
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	4 cut(s)	41, 146, 319, 411
BspANI	GGCC	3 cut(s)	66, 219, 410
BspCNI	CTCAG	1 cut(s)	439
BspLI	GGNNCC	1 cut(s)	298
BspPI	GGATC	1 cut(s)	397
BspQI	GCTCTTC	1 cut(s)	292
BsrDI	GCAATG	1 cut(s)	147
BsrFI	RCCGGY	1 cut(s)	184
BsrI	ACTGG	1 cut(s)	196
BssAI	RCCGGY	1 cut(s)	184
BssECI	CCNNGG	2 cut(s)	9, 123
BssMI	GATC	1 cut(s)	389
BssT1I	CCWWGG	2 cut(s)	9, 123
Bst4CI	ACNGT	1 cut(s)	156
Bst6I	CTCTTC	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	469
BstDEI	CTNAG	2 cut(s)	426, 472
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	4 cut(s)	50, 133, 260, 422
BstKTI	GATC	1 cut(s)	392
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	1 cut(s)	389
BstNSI	RCATGY	2 cut(s)	272, 471
BstSLI	GKGCMC	1 cut(s)	123
BstV2I	GAAGAC	1 cut(s)	100
BstXI	CCANNNNNNTGG	1 cut(s)	16
BsuRI	GGCC	3 cut(s)	66, 219, 410
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	4 cut(s)	50, 133, 260, 422
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	2 cut(s)	152, 174
Cac8I	GCNNGC	1 cut(s)	469
Cfr10I	RCCGGY	1 cut(s)	184
Csp6I	GTAC	1 cut(s)	199
CspAI	ACCGGT	1 cut(s)	184
CspCI	CAANNNNNGTGG	2 cut(s)	255, 290
CviAII	CATG	4 cut(s)	10, 269, 468, 485
CviJI	RGCY	6 cut(s)	8, 66, 175, 219, 375, 410
CviKI_1	RGCY	6 cut(s)	8, 66, 175, 219, 375, 410
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	2 cut(s)	426, 472
DpnI	GATC	1 cut(s)	391
DpnII	GATC	1 cut(s)	389
DrdI	GACNNNNNNGTC	1 cut(s)	104
DseDI	GACNNNNNNGTC	1 cut(s)	104
EaeI	YGGCCR	1 cut(s)	408
Eam1104I	CTCTTC	1 cut(s)	292
EarI	CTCTTC	1 cut(s)	292
Eco130I	CCWWGG	2 cut(s)	9, 123
EcoT14I	CCWWGG	2 cut(s)	9, 123
ErhI	CCWWGG	2 cut(s)	9, 123
Esp3I	CGTCTC	1 cut(s)	90
FaeI	CATG	4 cut(s)	13, 272, 471, 488
FaiI	YATR	5 cut(s)	11, 23, 270, 469, 486
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	4 cut(s)	9, 268, 467, 484
FauI	CCCGC	1 cut(s)	326
Fnu4HI	GCNGC	1 cut(s)	411
FokI	GGATG	4 cut(s)	37, 140, 247, 429
Fsp4HI	GCNGC	1 cut(s)	411
GluI	GCNGC	1 cut(s)	411
HaeIII	GGCC	3 cut(s)	66, 219, 410
HapII	CCGG	2 cut(s)	185, 351
Hin1II	CATG	4 cut(s)	13, 272, 471, 488
HincII	GTYRAC	1 cut(s)	159
HindII	GTYRAC	1 cut(s)	159
HinfI	GANTC	4 cut(s)	26, 47, 314, 479
HpaII	CCGG	2 cut(s)	185, 351
HphI	GGTGA	2 cut(s)	174, 199
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	2 cut(s)	292, 429
Hpy8I	GTNNAC	1 cut(s)	159
HpyCH4III	ACNGT	1 cut(s)	156
HpyCH4IV	ACGT	2 cut(s)	105, 323
HpyCH4V	TGCA	5 cut(s)	140, 213, 227, 251, 277
HpyF3I	CTNAG	2 cut(s)	426, 472
HpySE526I	ACGT	2 cut(s)	105, 323
Hsp92II	CATG	4 cut(s)	13, 272, 471, 488
Kzo9I	GATC	1 cut(s)	389
LguI	GCTCTTC	1 cut(s)	292
LpnPI	CCDG	7 cut(s)	177, 198, 295, 317, 364, 392, 399
MaeII	ACGT	2 cut(s)	105, 323
MaeIII	GTNAC	2 cut(s)	150, 187
MalI	GATC	1 cut(s)	391
MboI	GATC	1 cut(s)	389
MboII	GAAGA	3 cut(s)	100, 279, 395
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	3 cut(s)	114, 240, 421
MlyI	GAGTC	3 cut(s)	41, 308, 473
MnlI	CCTC	6 cut(s)	45, 77, 85, 355, 441, 469
MspI	CCGG	2 cut(s)	185, 351
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	1 cut(s)	389
NlaIII	CATG	4 cut(s)	13, 272, 471, 488
NlaIV	GGNNCC	1 cut(s)	298
NmuCI	GTSAC	2 cut(s)	150, 187
NspI	RCATGY	2 cut(s)	272, 471
PaeI	GCATGC	1 cut(s)	471
PciI	ACATGT	1 cut(s)	268
PciSI	GCTCTTC	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	26
PinAI	ACCGGT	1 cut(s)	184
PkrI	GCNGC	1 cut(s)	412
PleI	GAGTC	3 cut(s)	41, 308, 473
PpsI	GAGTC	3 cut(s)	41, 308, 473
PscI	ACATGT	1 cut(s)	268
PspN4I	GGNNCC	1 cut(s)	298
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
SapI	GCTCTTC	1 cut(s)	292
SatI	GCNGC	1 cut(s)	411
Sau3AI	GATC	1 cut(s)	389
ScaI	AGTACT	1 cut(s)	200
SchI	GAGTC	3 cut(s)	41, 308, 473
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	7 cut(s)	37, 77, 108, 177, 326, 336, 377
SgrAI	CRCCGGYG	1 cut(s)	184
SphI	GCATGC	1 cut(s)	471
Sse9I	AATT	3 cut(s)	114, 240, 421
SsiI	CCGC	4 cut(s)	41, 146, 319, 411
StyI	CCWWGG	2 cut(s)	9, 123
TaaI	ACNGT	1 cut(s)	156
TaiI	ACGT	2 cut(s)	108, 326
TaqI	TCGA	2 cut(s)	29, 356
TasI	AATT	3 cut(s)	114, 240, 421
TatI	WGTACW	1 cut(s)	198
TauI	GCSGC	1 cut(s)	413
TfiI	GAWTC	1 cut(s)	26
TscAI	CASTG	2 cut(s)	159, 174
TseFI	GTSAC	2 cut(s)	150, 187
Tsp45I	GTSAC	2 cut(s)	150, 187
TspDTI	ATGAA	2 cut(s)	234, 335
TspGWI	ACGGA	1 cut(s)	219
TspRI	CASTG	2 cut(s)	159, 174
XapI	RAATTY	1 cut(s)	240
XceI	RCATGY	2 cut(s)	272, 471
ZrmI	AGTACT	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.