Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0009953

Physical Location & Seq

Genomic Coordinates Reverse (-)

29252332 .. 29253781

Gene Structure 1450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g26780.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGAAGCTACGGACATGGAGGTGGAGGAACTCCCTCCGTCCAATCCTGACCCCTTCAAGCGTATCTCCCTAAAAAATTCCATCCAAACCAACTTCGGCGACGACTATGTCTTCCAAATTGCCCCCAAGGATGATTGGACGGCAATGGCGGTGTCGCTTTCGACCAACGCCGTGAAGGTGTACTCTCCGGTGACGGGCCAGTACTACGGAGAGTGCAAGGGCCACTCTGCCACTATCAACCAAATTGCATTTTCAGGTCCATCAACTCCACATGTCCTGCACTCTTGTTCTTCTGATGGAACGATTCGAGCTTGGGACACGCGCACATTTCAACAGGTTTCATCTTTTCATTCTGGCTCTTCTCAGGAGATTTTCAGCTTTTCGTTCGGAGGATCAGGGAACAATCTTCTCGCCGCGGGATGTGATGCTCAGATACTATTCTGGGATTGGAGGAGCAATAAACAAGTAGCGTGCCTTGAGGATTCTCATGTAGAAGATGTTACCCAGGTTCACTTCATCCCGGATCGATCAAAGCAAGCTTCTTTCTGCTTCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0010029 GO:0040008 GO:0048580 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:1900140 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

186

Amino Acids

20.43

Weight (kDa)

4.94

Isoelectric Point (pI)

39.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47790
fragaria_vesca	FvH4_2g25530 FvH4_2g25530
malus_domestica	MD03G1286100.v1.1 MD11G1306000.v1.1
prunus_persica	Prupe.8G259400_v2.0.a1 Prupe.8G259600_v2.0.a1
pyrus_communis	pycom11g26780
rosa_chinensis	RchiOBHm_Chr6g0293741 RchiOBHm_Chr6g0293751
rosa_laevigata	RLG00000011927
rosa_multiflora	Rmu_co8509229.1_g000002 Rmu_sc0005641.1_g000008 Rmu_sc0040923.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173930
rosa_rugosa	Rorug06G0237800
rosa_samantha	Rh6AG350600 Rh6BG358000 Rh6CG364900 Rh6DG351800
rosa_wichuraiana	Rw6G030530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	107
AccII	CGCG	2 cut(s)	322, 416
AciI	CCGC	3 cut(s)	149, 414, 416
AclWI	GGATC	2 cut(s)	400, 531
AcsI	RAATTY	1 cut(s)	76
AfaI	GTAC	2 cut(s)	182, 203
AfiI	CCNNNNNNNGG	1 cut(s)	194
AflIII	ACRYGT	1 cut(s)	271
AgsI	TTSAA	2 cut(s)	58, 332
AjnI	CCWGG	1 cut(s)	504
AluBI	AGCT	4 cut(s)	8, 311, 378, 539
AluI	AGCT	4 cut(s)	8, 311, 378, 539
AlwI	GGATC	2 cut(s)	400, 531
AoxI	GGCC	2 cut(s)	196, 220
ApoI	RAATTY	1 cut(s)	76
AspLEI	GCGC	1 cut(s)	324
AspS9I	GGNCC	3 cut(s)	196, 220, 257
AsuC2I	CCSGG	1 cut(s)	521
AsuHPI	GGTGA	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	257
BbsI	GAAGAC	1 cut(s)	103
BccI	CCATC	3 cut(s)	89, 268, 290
BceAI	ACGGC	2 cut(s)	155, 156
BciT130I	CCWGG	1 cut(s)	506
BcnI	CCSGG	1 cut(s)	521
BisI	GCNGC	1 cut(s)	414
BlsI	GCNGC	1 cut(s)	415
BmcAI	AGTACT	1 cut(s)	203
Bme1390I	CCNGG	2 cut(s)	506, 521
Bme18I	GGWCC	1 cut(s)	257
BmgT120I	GGNCC	3 cut(s)	196, 220, 257
BmrFI	CCNGG	2 cut(s)	506, 521
BmsI	GCATC	1 cut(s)	415
BpiI	GAAGAC	1 cut(s)	103
BpuEI	CTTGAG	1 cut(s)	497
BpuMI	CCSGG	1 cut(s)	521
Bsa29I	ATCGAT	1 cut(s)	526
BsaJI	CCNNGG	3 cut(s)	126, 414, 504
BsaWI	WCCGGW	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	199
Bse3DI	GCAATG	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	506
BseCI	ATCGAT	1 cut(s)	526
BseDI	CCNNGG	3 cut(s)	126, 414, 504
BseGI	GGATG	4 cut(s)	81, 136, 425, 516
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	2 cut(s)	377, 443
BseNI	ACTGG	1 cut(s)	199
BseRI	GAGGAG	1 cut(s)	466
BsgI	GTGCAG	1 cut(s)	263
Bsh1236I	CGCG	2 cut(s)	322, 416
BshFI	GGCC	2 cut(s)	198, 222
BshVI	ATCGAT	1 cut(s)	526
BsiSI	CCGG	2 cut(s)	188, 521
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmFI	GGGAC	1 cut(s)	329
BsnI	GGCC	2 cut(s)	198, 222
Bsp143I	GATC	3 cut(s)	392, 523, 527
BspACI	CCGC	3 cut(s)	149, 414, 416
BspANI	GGCC	2 cut(s)	198, 222
BspCNI	CTCAG	2 cut(s)	376, 442
BspDI	ATCGAT	1 cut(s)	526
BspFNI	CGCG	2 cut(s)	322, 416
BspPI	GGATC	2 cut(s)	400, 531
BspQI	GCTCTTC	1 cut(s)	364
BsrDI	GCAATG	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	199
BssECI	CCNNGG	3 cut(s)	126, 414, 504
BssMI	GATC	3 cut(s)	392, 523, 527
BssT1I	CCWWGG	1 cut(s)	126
Bst2UI	CCWGG	1 cut(s)	506
Bst6I	CTCTTC	1 cut(s)	364
BstC8I	GCNNGC	2 cut(s)	472, 537
BstDEI	CTNAG	2 cut(s)	363, 429
BstDSI	CCRYGG	1 cut(s)	414
BstF5I	GGATG	4 cut(s)	81, 136, 425, 516
BstFNI	CGCG	2 cut(s)	322, 416
BstHHI	GCGC	1 cut(s)	324
BstKTI	GATC	3 cut(s)	395, 526, 530
BstMBI	GATC	3 cut(s)	392, 523, 527
BstNI	CCWGG	1 cut(s)	506
BstNSI	RCATGY	1 cut(s)	275
BstSCI	CCNGG	2 cut(s)	504, 519
BstUI	CGCG	2 cut(s)	322, 416
BstV2I	GAAGAC	1 cut(s)	103
Bsu15I	ATCGAT	1 cut(s)	526
BsuRI	GGCC	2 cut(s)	198, 222
BsuTUI	ATCGAT	1 cut(s)	526
BtgI	CCRYGG	1 cut(s)	414
BtsCI	GGATG	4 cut(s)	81, 136, 425, 516
Cac8I	GCNNGC	2 cut(s)	472, 537
CfoI	GCGC	1 cut(s)	324
Cfr13I	GGNCC	3 cut(s)	196, 220, 257
Cfr42I	CCGCGG	1 cut(s)	417
ClaI	ATCGAT	1 cut(s)	526
Csp6I	GTAC	2 cut(s)	181, 202
CviAII	CATG	3 cut(s)	16, 272, 488
CviJI	RGCY	7 cut(s)	8, 198, 222, 311, 357, 378, 539
CviKI_1	RGCY	7 cut(s)	8, 198, 222, 311, 357, 378, 539
CviQI	GTAC	2 cut(s)	181, 202
DdeI	CTNAG	2 cut(s)	363, 429
DpnI	GATC	3 cut(s)	394, 525, 529
DpnII	GATC	3 cut(s)	392, 523, 527
DrdI	GACNNNNNNGTC	1 cut(s)	107
DseDI	GACNNNNNNGTC	1 cut(s)	107
Eam1104I	CTCTTC	1 cut(s)	364
EarI	CTCTTC	1 cut(s)	364
Eco130I	CCWWGG	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	504
EcoT14I	CCWWGG	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	3 cut(s)	19, 275, 491
FaiI	YATR	4 cut(s)	17, 108, 273, 489
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	3 cut(s)	15, 271, 487
FauI	CCCGC	1 cut(s)	409
Fnu4HI	GCNGC	1 cut(s)	414
FokI	GGATG	4 cut(s)	68, 143, 432, 503
Fsp4HI	GCNGC	1 cut(s)	414
GlaI	GCGC	1 cut(s)	323
GluI	GCNGC	1 cut(s)	414
HaeIII	GGCC	2 cut(s)	198, 222
HapII	CCGG	2 cut(s)	188, 521
HhaI	GCGC	1 cut(s)	324
Hin1II	CATG	3 cut(s)	19, 275, 491
Hin6I	GCGC	1 cut(s)	322
HinP1I	GCGC	1 cut(s)	322
HindIII	AAGCTT	1 cut(s)	537
HinfI	GANTC	2 cut(s)	304, 482
HpaII	CCGG	2 cut(s)	188, 521
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	2 cut(s)	181, 511
Hpy188I	TCNGA	3 cut(s)	295, 389, 432
Hpy188III	TCNNGA	2 cut(s)	47, 365
Hpy8I	GTNNAC	2 cut(s)	181, 511
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	2 cut(s)	64, 169
HpyCH4V	TGCA	3 cut(s)	216, 248, 280
HpyF3I	CTNAG	2 cut(s)	363, 429
Hsp92II	CATG	3 cut(s)	19, 275, 491
HspAI	GCGC	1 cut(s)	322
KspI	CCGCGG	1 cut(s)	417
Kzo9I	GATC	3 cut(s)	392, 523, 527
LguI	GCTCTTC	1 cut(s)	364
LmnI	GCTCC	1 cut(s)	453
LweI	GCATC	1 cut(s)	415
MaeIII	GTNAC	2 cut(s)	190, 499
MalI	GATC	3 cut(s)	394, 525, 529
MboI	GATC	3 cut(s)	392, 523, 527
MboII	GAAGA	5 cut(s)	103, 282, 351, 398, 506
MluCI	AATT	3 cut(s)	76, 117, 243
MnlI	CCTC	6 cut(s)	13, 19, 45, 383, 444, 472
MslI	CAYNNNNRTG	1 cut(s)	20
MspA1I	CMGCKG	1 cut(s)	416
MspI	CCGG	2 cut(s)	188, 521
MspR9I	CCNGG	2 cut(s)	506, 521
MvaI	CCWGG	1 cut(s)	506
MvnI	CGCG	2 cut(s)	322, 416
NciI	CCSGG	1 cut(s)	521
NdeII	GATC	3 cut(s)	392, 523, 527
NlaIII	CATG	3 cut(s)	19, 275, 491
NmuCI	GTSAC	1 cut(s)	190
NspI	RCATGY	1 cut(s)	275
PciI	ACATGT	1 cut(s)	271
PciSI	GCTCTTC	1 cut(s)	364
PfeI	GAWTC	2 cut(s)	304, 482
PflFI	GACNNNGTC	1 cut(s)	107
PfoI	TCCNGGA	1 cut(s)	519
PkrI	GCNGC	1 cut(s)	415
PscI	ACATGT	1 cut(s)	271
Psp6I	CCWGG	1 cut(s)	504
PspGI	CCWGG	1 cut(s)	504
PspPI	GGNCC	3 cut(s)	196, 220, 257
PsyI	GACNNNGTC	1 cut(s)	107
RsaI	GTAC	2 cut(s)	182, 203
RsaNI	GTAC	2 cut(s)	181, 202
RseI	CAYNNNNRTG	1 cut(s)	20
SacII	CCGCGG	1 cut(s)	417
SapI	GCTCTTC	1 cut(s)	364
SatI	GCNGC	1 cut(s)	414
Sau3AI	GATC	3 cut(s)	392, 523, 527
Sau96I	GGNCC	3 cut(s)	196, 220, 257
ScaI	AGTACT	1 cut(s)	203
ScrFI	CCNGG	2 cut(s)	506, 521
SetI	ASST	9 cut(s)	10, 24, 180, 259, 313, 339, 380, 510, 541
SfaNI	GCATC	1 cut(s)	415
Sfr303I	CCGCGG	1 cut(s)	417
SgrBI	CCGCGG	1 cut(s)	417
SinI	GGWCC	1 cut(s)	257
SmiMI	CAYNNNNRTG	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	3 cut(s)	76, 117, 243
SsiI	CCGC	3 cut(s)	149, 414, 416
StyD4I	CCNGG	2 cut(s)	504, 519
StyI	CCWWGG	1 cut(s)	126
TaqI	TCGA	3 cut(s)	161, 307, 526
TasI	AATT	3 cut(s)	76, 117, 243
TatI	WGTACW	2 cut(s)	180, 201
TauI	GCSGC	1 cut(s)	416
TfiI	GAWTC	2 cut(s)	304, 482
TseFI	GTSAC	1 cut(s)	190
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	3 cut(s)	330, 338, 505
TspGWI	ACGGA	3 cut(s)	26, 27, 222
Tth111I	GACNNNGTC	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	257
XapI	RAATTY	1 cut(s)	76
XceI	RCATGY	1 cut(s)	275
ZrmI	AGTACT	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.