Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8509229.1

Orthogroup ID

OG0009953

Physical Location & Seq

Genomic Coordinates Reverse (-)

2050 .. 3536

Gene Structure 1487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8509229.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atgtgggattggaggaacgacaaacaagtagcatgcttagaggactctcatgtggaagatgttactcaggcaggctcttatgcatttgcgatcatggaattgttagttcacttcattcctgaccatcaaagcaagctcctttctgcttctgtagatggattgatatgtatatttgatacagatggagatatcaacgaagatgatcatcttgagtcagtgctaaatgtgggcacttccattgggaaggtggggttttttggtgagacgtatcaaaagctttggtgtttgacccatattgaaaccttaagtatctgggactggaaggatgcaactgaaacaaatttccaggacgctcgtttgttggcttctaacagttggactctaggtgaagttgattattttgttgattgccactactcaagagaagcagaacgattatggcttattggtggcgccaacactggcactttaggttacttccctgtaacttacacaggaacgcgagccataggttcccctgaagcaattatggaaggtggccatacgggtgttgtccgaagtgtgttgcctatgtcaaacatgccaggtccccaaggcaaaagcatttttggatggactggcggtgaagatggccatttatgttgctggttatcagatgattctctggacaccataaaccgatcatggagttcaagcgaactggttttgagatcaccaaagatccgaaagtcaaaaaggcatagtccctactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0010029 GO:0040008 GO:0048580 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:1900140 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

250

Amino Acids

27.92

Weight (kDa)

4.81

Isoelectric Point (pI)

45.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47790
fragaria_vesca	FvH4_2g25530 FvH4_2g25530
malus_domestica	MD03G1286100.v1.1 MD11G1306000.v1.1
prunus_persica	Prupe.8G259400_v2.0.a1 Prupe.8G259600_v2.0.a1
pyrus_communis	pycom11g26780
rosa_chinensis	RchiOBHm_Chr6g0293741 RchiOBHm_Chr6g0293751
rosa_laevigata	RLG00000011927
rosa_multiflora	Rmu_co8509229.1_g000002 Rmu_sc0005641.1_g000008 Rmu_sc0040923.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173930
rosa_rugosa	Rorug06G0237800
rosa_samantha	Rh6AG350600 Rh6BG358000 Rh6CG364900 Rh6DG351800
rosa_wichuraiana	Rw6G030530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	452
AccII	CGCG	1 cut(s)	502
AciI	CCGC	1 cut(s)	621
AclWI	GGATC	1 cut(s)	715
AcoI	YGGCCR	2 cut(s)	538, 631
AcsI	RAATTY	1 cut(s)	340
AcuI	CTGAAG	1 cut(s)	540
AcyI	GRCGYC	1 cut(s)	453
AflII	CTTAAG	1 cut(s)	304
AgsI	TTSAA	2 cut(s)	299, 693
AjnI	CCWGG	2 cut(s)	345, 583
AluBI	AGCT	2 cut(s)	136, 277
AluI	AGCT	2 cut(s)	136, 277
Alw26I	GTCTC	1 cut(s)	257
AlwI	GGATC	1 cut(s)	715
AoxI	GGCC	2 cut(s)	538, 631
ApoI	RAATTY	1 cut(s)	340
AspLEI	GCGC	1 cut(s)	455
AspS9I	GGNCC	1 cut(s)	587
AsuHPI	GGTGA	4 cut(s)	272, 398, 635, 705
AvaII	GGWCC	1 cut(s)	587
BaeGI	GKGCMC	1 cut(s)	233
BalI	TGGCCA	2 cut(s)	540, 633
BanI	GGYRCC	1 cut(s)	452
BccI	CCATC	5 cut(s)	132, 149, 176, 606, 623
BciT130I	CCWGG	2 cut(s)	347, 585
BclI	TGATCA	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	257
BfaI	CTAG	2 cut(s)	383, 751
BfmI	CTRYAG	1 cut(s)	150
BfoI	RGCGCY	1 cut(s)	456
BfrI	CTTAAG	1 cut(s)	304
Bme1390I	CCNGG	2 cut(s)	347, 585
Bme18I	GGWCC	1 cut(s)	587
BmgT120I	GGNCC	1 cut(s)	587
BmiI	GGNNCC	3 cut(s)	454, 514, 589
BmrFI	CCNGG	2 cut(s)	347, 585
BmsI	GCATC	1 cut(s)	316
BpuEI	CTTGAG	2 cut(s)	230, 403
BsaBI	GATNNNNATC	1 cut(s)	204
BsaHI	GRCGYC	1 cut(s)	453
BsaJI	CCNNGG	1 cut(s)	592
Bse1I	ACTGG	4 cut(s)	323, 466, 622, 705
Bse8I	GATNNNNATC	1 cut(s)	204
BseBI	CCWGG	2 cut(s)	347, 585
BseDI	CCNNGG	1 cut(s)	592
BseGI	GGATG	2 cut(s)	331, 617
BseJI	GATNNNNATC	1 cut(s)	204
BseMII	CTCAG	1 cut(s)	80
BseNI	ACTGG	4 cut(s)	323, 466, 622, 705
BseSI	GKGCMC	1 cut(s)	233
Bsh1236I	CGCG	1 cut(s)	502
BshFI	GGCC	2 cut(s)	540, 633
BshNI	GGYRCC	1 cut(s)	452
BslFI	GGGAC	3 cut(s)	329, 573, 729
BsmAI	GTCTC	1 cut(s)	257
BsmBI	CGTCTC	1 cut(s)	257
BsmFI	GGGAC	3 cut(s)	329, 573, 729
BsnI	GGCC	2 cut(s)	540, 633
Bsp1286I	GDGCHC	1 cut(s)	233
Bsp143I	GATC	5 cut(s)	90, 202, 680, 710, 720
BspACI	CCGC	1 cut(s)	621
BspANI	GGCC	2 cut(s)	540, 633
BspCNI	CTCAG	1 cut(s)	79
BspFNI	CGCG	1 cut(s)	502
BspLI	GGNNCC	3 cut(s)	454, 514, 589
BspPI	GGATC	1 cut(s)	715
BspT107I	GGYRCC	1 cut(s)	452
BspTI	CTTAAG	1 cut(s)	304
BsrI	ACTGG	4 cut(s)	323, 466, 622, 705
BssECI	CCNNGG	1 cut(s)	592
BssMI	GATC	5 cut(s)	90, 202, 680, 710, 720
BssNI	GRCGYC	1 cut(s)	453
BssT1I	CCWWGG	1 cut(s)	592
Bst2UI	CCWGG	2 cut(s)	347, 585
Bst4CI	ACNGT	1 cut(s)	374
BstACI	GRCGYC	1 cut(s)	453
BstAFI	CTTAAG	1 cut(s)	304
BstC8I	GCNNGC	4 cut(s)	34, 73, 134, 504
BstDEI	CTNAG	2 cut(s)	37, 66
BstF5I	GGATG	2 cut(s)	331, 617
BstFNI	CGCG	1 cut(s)	502
BstH2I	RGCGCY	1 cut(s)	456
BstHHI	GCGC	1 cut(s)	455
BstKTI	GATC	5 cut(s)	93, 205, 683, 713, 723
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	5 cut(s)	90, 202, 680, 710, 720
BstNI	CCWGG	2 cut(s)	347, 585
BstNSI	RCATGY	2 cut(s)	36, 583
BstSCI	CCNGG	2 cut(s)	345, 583
BstSFI	CTRYAG	1 cut(s)	150
BstSLI	GKGCMC	1 cut(s)	233
BstUI	CGCG	1 cut(s)	502
BstX2I	RGATCY	1 cut(s)	720
BstYI	RGATCY	1 cut(s)	720
BsuRI	GGCC	2 cut(s)	540, 633
BtsCI	GGATG	2 cut(s)	331, 617
BtsIMutI	CAGTG	2 cut(s)	222, 459
Cac8I	GCNNGC	4 cut(s)	34, 73, 134, 504
CfoI	GCGC	1 cut(s)	455
Cfr13I	GGNCC	1 cut(s)	587
CseI	GACGC	1 cut(s)	359
CviAII	CATG	5 cut(s)	33, 50, 94, 580, 684
CviJI	RGCY	8 cut(s)	75, 136, 277, 365, 442, 506, 540, 633
CviKI_1	RGCY	8 cut(s)	75, 136, 277, 365, 442, 506, 540, 633
DdeI	CTNAG	2 cut(s)	37, 66
DinI	GGCGCC	1 cut(s)	454
DpnI	GATC	5 cut(s)	92, 204, 682, 712, 722
DpnII	GATC	5 cut(s)	90, 202, 680, 710, 720
EaeI	YGGCCR	2 cut(s)	538, 631
Eco130I	CCWWGG	1 cut(s)	592
Eco32I	GATATC	1 cut(s)	190
Eco47I	GGWCC	1 cut(s)	587
Eco57I	CTGAAG	1 cut(s)	540
EcoO109I	RGGNCCY	1 cut(s)	587
EcoRII	CCWGG	2 cut(s)	345, 583
EcoRV	GATATC	1 cut(s)	190
EcoT14I	CCWWGG	1 cut(s)	592
EcoT22I	ATGCAT	1 cut(s)	85
EgeI	GGCGCC	1 cut(s)	454
EheI	GGCGCC	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	592
Esp3I	CGTCTC	1 cut(s)	257
FaeI	CATG	5 cut(s)	36, 53, 97, 583, 687
FaqI	GGGAC	3 cut(s)	329, 573, 729
FatI	CATG	5 cut(s)	32, 49, 93, 579, 683
FbaI	TGATCA	1 cut(s)	202
FokI	GGATG	2 cut(s)	338, 624
FspBI	CTAG	2 cut(s)	383, 751
GlaI	GCGC	1 cut(s)	454
HaeII	RGCGCY	1 cut(s)	456
HaeIII	GGCC	2 cut(s)	540, 633
HgaI	GACGC	1 cut(s)	359
HhaI	GCGC	1 cut(s)	455
Hin1I	GRCGYC	1 cut(s)	453
Hin1II	CATG	5 cut(s)	36, 53, 97, 583, 687
Hin6I	GCGC	1 cut(s)	453
HinP1I	GCGC	1 cut(s)	453
HindIII	AAGCTT	1 cut(s)	275
HinfI	GANTC	4 cut(s)	44, 212, 379, 659
HphI	GGTGA	4 cut(s)	272, 398, 635, 705
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	3 cut(s)	557, 655, 725
Hpy188III	TCNNGA	4 cut(s)	119, 209, 420, 665
Hpy8I	GTNNAC	1 cut(s)	109
HpyAV	CCTTC	3 cut(s)	238, 316, 527
HpyCH4III	ACNGT	1 cut(s)	374
HpyCH4IV	ACGT	1 cut(s)	266
HpyCH4V	TGCA	2 cut(s)	83, 329
HpyF3I	CTNAG	2 cut(s)	37, 66
HpySE526I	ACGT	1 cut(s)	266
Hsp92I	GRCGYC	1 cut(s)	453
Hsp92II	CATG	5 cut(s)	36, 53, 97, 583, 687
HspAI	GCGC	1 cut(s)	453
KasI	GGCGCC	1 cut(s)	452
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	5 cut(s)	90, 202, 680, 710, 720
LmnI	GCTCC	1 cut(s)	141
LweI	GCATC	1 cut(s)	316
MaeI	CTAG	2 cut(s)	383, 751
MaeII	ACGT	1 cut(s)	266
MaeIII	GTNAC	3 cut(s)	61, 473, 484
MalI	GATC	5 cut(s)	92, 204, 682, 712, 722
MboI	GATC	5 cut(s)	90, 202, 680, 710, 720
MboII	GAAGA	3 cut(s)	68, 209, 638
MflI	RGATCY	1 cut(s)	720
MhlI	GDGCHC	1 cut(s)	233
MlsI	TGGCCA	2 cut(s)	540, 633
MluCI	AATT	3 cut(s)	98, 340, 525
MluNI	TGGCCA	2 cut(s)	540, 633
Mly113I	GGCGCC	1 cut(s)	453
MlyI	GAGTC	3 cut(s)	38, 221, 373
MmeI	TCCRAC	1 cut(s)	356
MnlI	CCTC	2 cut(s)	6, 34
Mox20I	TGGCCA	2 cut(s)	540, 633
Mph1103I	ATGCAT	1 cut(s)	85
MscI	TGGCCA	2 cut(s)	540, 633
MseI	TTAA	1 cut(s)	305
MslI	CAYNNNNRTG	1 cut(s)	546
Msp20I	TGGCCA	2 cut(s)	540, 633
MspCI	CTTAAG	1 cut(s)	304
MspR9I	CCNGG	2 cut(s)	347, 585
MvaI	CCWGG	2 cut(s)	347, 585
MvnI	CGCG	1 cut(s)	502
NarI	GGCGCC	1 cut(s)	453
NdeII	GATC	5 cut(s)	90, 202, 680, 710, 720
NlaIII	CATG	5 cut(s)	36, 53, 97, 583, 687
NlaIV	GGNNCC	3 cut(s)	454, 514, 589
NsiI	ATGCAT	1 cut(s)	85
NspI	RCATGY	2 cut(s)	36, 583
PaeI	GCATGC	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	659
PfoI	TCCNGGA	1 cut(s)	345
PleI	GAGTC	3 cut(s)	38, 220, 373
PluTI	GGCGCC	1 cut(s)	456
PpsI	GAGTC	3 cut(s)	38, 220, 373
PpuMI	RGGWCCY	1 cut(s)	587
Psp5II	RGGWCCY	1 cut(s)	587
Psp6I	CCWGG	2 cut(s)	345, 583
PspGI	CCWGG	2 cut(s)	345, 583
PspN4I	GGNNCC	3 cut(s)	454, 514, 589
PspPI	GGNCC	1 cut(s)	587
PspPPI	RGGWCCY	1 cut(s)	587
PsuI	RGATCY	1 cut(s)	720
RseI	CAYNNNNRTG	1 cut(s)	546
SaqAI	TTAA	1 cut(s)	305
Sau3AI	GATC	5 cut(s)	90, 202, 680, 710, 720
Sau96I	GGNCC	1 cut(s)	587
SchI	GAGTC	3 cut(s)	38, 221, 373
ScrFI	CCNGG	2 cut(s)	347, 585
SduI	GDGCHC	1 cut(s)	233
SfaNI	GCATC	1 cut(s)	316
SfcI	CTRYAG	1 cut(s)	150
SfoI	GGCGCC	1 cut(s)	454
SinI	GGWCC	1 cut(s)	587
SmiMI	CAYNNNNRTG	1 cut(s)	546
SmlI	CTYRAG	3 cut(s)	209, 304, 418
SmoI	CTYRAG	3 cut(s)	209, 304, 418
SphI	GCATGC	1 cut(s)	36
Sse9I	AATT	3 cut(s)	98, 340, 525
SsiI	CCGC	1 cut(s)	621
SspDI	GGCGCC	1 cut(s)	452
SspMI	CTAG	2 cut(s)	383, 751
StyD4I	CCNGG	2 cut(s)	345, 583
StyI	CCWWGG	1 cut(s)	592
TaaI	ACNGT	1 cut(s)	374
TaiI	ACGT	1 cut(s)	269
TasI	AATT	3 cut(s)	98, 340, 525
TfiI	GAWTC	1 cut(s)	659
Tru1I	TTAA	1 cut(s)	305
Tru9I	TTAA	1 cut(s)	305
TscAI	CASTG	2 cut(s)	222, 466
TspDTI	ATGAA	1 cut(s)	103
TspRI	CASTG	2 cut(s)	222, 466
Vha464I	CTTAAG	1 cut(s)	304
VpaK11BI	GGWCC	1 cut(s)	587
XapI	RAATTY	1 cut(s)	340
XceI	RCATGY	2 cut(s)	36, 583
XcmI	CCANNNNNNNNNTGG	1 cut(s)	244
XspI	CTAG	2 cut(s)	383, 751
Zsp2I	ATGCAT	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.