Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0009953

Physical Location & Seq

Genomic Coordinates Reverse (-)

21986228 .. 21990205

Gene Structure 3978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G259400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCGGTGTCTCTGTCAACGAACGCAGTGAAGGTGTACTCACCAGTGACAGGTCAGTACTATGGAGAGTGCAAGGGCCACTCTGCAACTATCAACCACATCTCTTTCTCAGGTCCTTCAACTCCTCATGTCTTGCATTCATGTTCTTCTGACGGAACCATTAGAGCTTGGGACACCCGCACATTCCAACAGGTGTCTTCTTTTCATTCTGGTTCTTCTCAAGAGATTTTCAGCTTTTCATTTGGAGGATCAGCTAACAGTCTTCTTGCCGCCGGATGTAACACTCAGATACTATTCTGGGATTGGAGGAATGATAAACAAGTCGCATGCCTGGAGGACTCTCATGTAGAAGATGTTACCCAGGTTCACTTCATTCCTGACCATCAAAGCAAGCTTCTTTCTGCTTCTGTCGATGGATTGATATGTGTATTTGATACAGATGGGGATATCAATGATGATGATCATCTGGAATCAGTGCTTAATGTGGGAACTTCAGTTGGGAAGGTTGGGTTTTTTGGAGAGACGTATCAAAAGCTTTGGTGTTTGACCCATATTGAAACCTTAAGTATCTGGGACTGGAAAGATGCAAGTGAAACAAATTTCAAGGATGCTCGTTCTTTGGCTTCTGACTGCTGGACACTGGATGATGTTGATTATTTTGTTGATTGCCACTACTCGAGAGAAGCAGAACAATTATGGATAATTGGTGGCACAAATACTGGCACTCTGGGTTACTTTCCTGTAAGTTATAGAGGAACGAGAGCTATAGGGTCCCCTGAAGCAATTCTTGGAGGTGGACATACAGGTATTGTTCGAAGTGTGTTACCCATGTCAAGCATGCCGGGCAGGTCCAGCCAAGGTCAAGGCCATGGCATTTTTGGATGGACTGGTGGGGAAGATGGCCGCTTATGTTGCTGGTCATCCGACAATTCTCCTGAGATAAACCGATCATGGATTTCAAGCACACTGGTTTCGAGATCACCAAGGACCCGCCACACAGTAAGGCATCATCCCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0010029 GO:0040008 GO:0048580 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:1900140 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

340

Amino Acids

37.23

Weight (kDa)

5.49

Isoelectric Point (pI)

44.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47790
fragaria_vesca	FvH4_2g25530 FvH4_2g25530
malus_domestica	MD03G1286100.v1.1 MD11G1306000.v1.1
prunus_persica	Prupe.8G259400_v2.0.a1 Prupe.8G259600_v2.0.a1
pyrus_communis	pycom11g26780
rosa_chinensis	RchiOBHm_Chr6g0293741 RchiOBHm_Chr6g0293751
rosa_laevigata	RLG00000011927
rosa_multiflora	Rmu_co8509229.1_g000002 Rmu_sc0005641.1_g000008 Rmu_sc0040923.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173930
rosa_rugosa	Rorug06G0237800
rosa_samantha	Rh6AG350600 Rh6BG358000 Rh6CG364900 Rh6DG351800
rosa_wichuraiana	Rw6G030530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	837
AciI	CCGC	5 cut(s)	5, 178, 270, 904, 991
AclWI	GGATC	1 cut(s)	256
AcoI	YGGCCR	1 cut(s)	901
AcsI	RAATTY	1 cut(s)	598
AcuI	CTGAAG	2 cut(s)	477, 798
AfaI	GTAC	2 cut(s)	38, 59
AfiI	CCNNNNNNNGG	1 cut(s)	50
AflII	CTTAAG	1 cut(s)	562
AgsI	TTSAA	4 cut(s)	120, 557, 604, 960
AjnI	CCWGG	2 cut(s)	330, 360
AjuI	GAANNNNNNNTTGG	2 cut(s)	771, 803
AluBI	AGCT	6 cut(s)	167, 234, 254, 394, 535, 764
AluI	AGCT	6 cut(s)	167, 234, 254, 394, 535, 764
Alw26I	GTCTC	2 cut(s)	15, 515
AlwI	GGATC	1 cut(s)	256
Ama87I	CYCGRG	1 cut(s)	676
AoxI	GGCC	3 cut(s)	76, 865, 901
ApoI	RAATTY	1 cut(s)	598
Asp700I	GAANNNNTTC	1 cut(s)	783
AspS9I	GGNCC	5 cut(s)	76, 113, 771, 849, 987
AsuC2I	CCSGG	1 cut(s)	843
AsuHPI	GGTGA	2 cut(s)	33, 972
AsuII	TTCGAA	1 cut(s)	814
AvaI	CYCGRG	1 cut(s)	676
AvaII	GGWCC	4 cut(s)	113, 771, 849, 987
BbsI	GAAGAC	2 cut(s)	189, 254
BccI	CCATC	5 cut(s)	390, 407, 434, 876, 893
BciT130I	CCWGG	2 cut(s)	332, 362
BclI	TGATCA	1 cut(s)	460
BcnI	CCSGG	1 cut(s)	843
BcoDI	GTCTC	2 cut(s)	15, 515
BfaI	CTAG	1 cut(s)	1018
BfmI	CTRYAG	1 cut(s)	765
BfrI	CTTAAG	1 cut(s)	562
BfuAI	ACCTGC	1 cut(s)	837
BisI	GCNGC	2 cut(s)	270, 904
BlsI	GCNGC	2 cut(s)	271, 905
BmcAI	AGTACT	1 cut(s)	59
Bme1390I	CCNGG	3 cut(s)	332, 362, 843
Bme18I	GGWCC	4 cut(s)	113, 771, 849, 987
BmeT110I	CYCGRG	1 cut(s)	676
BmgT120I	GGNCC	5 cut(s)	76, 113, 771, 849, 987
BmiI	GGNNCC	4 cut(s)	157, 772, 773, 989
BmrFI	CCNGG	3 cut(s)	332, 362, 843
BmsI	GCATC	3 cut(s)	574, 598, 1015
BpiI	GAAGAC	2 cut(s)	189, 254
BpmI	CTGGAG	1 cut(s)	353
Bpu14I	TTCGAA	1 cut(s)	814
BpuEI	CTTGAG	1 cut(s)	204
BpuMI	CCSGG	1 cut(s)	843
BsaBI	GATNNNNATC	2 cut(s)	459, 462
BsaJI	CCNNGG	4 cut(s)	360, 856, 868, 983
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse1I	ACTGG	6 cut(s)	44, 581, 645, 724, 892, 972
Bse8I	GATNNNNATC	2 cut(s)	459, 462
BseBI	CCWGG	2 cut(s)	332, 362
BseDI	CCNNGG	4 cut(s)	360, 856, 868, 983
BseGI	GGATG	6 cut(s)	281, 613, 649, 887, 920, 1009
BseJI	GATNNNNATC	2 cut(s)	459, 462
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMII	CTCAG	3 cut(s)	123, 299, 927
BseNI	ACTGG	6 cut(s)	44, 581, 645, 724, 892, 972
BseRI	GAGGAG	1 cut(s)	114
BshFI	GGCC	3 cut(s)	78, 867, 903
BsiHKCI	CYCGRG	1 cut(s)	676
BsiSI	CCGG	2 cut(s)	273, 842
BslFI	GGGAC	3 cut(s)	185, 587, 757
BslI	CCNNNNNNNGG	1 cut(s)	50
BsmAI	GTCTC	2 cut(s)	15, 515
BsmBI	CGTCTC	1 cut(s)	515
BsmFI	GGGAC	3 cut(s)	185, 587, 757
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	3 cut(s)	78, 867, 903
BsoBI	CYCGRG	1 cut(s)	676
Bsp119I	TTCGAA	1 cut(s)	814
Bsp143I	GATC	4 cut(s)	248, 460, 947, 977
Bsp19I	CCATGG	1 cut(s)	868
BspACI	CCGC	5 cut(s)	5, 178, 270, 904, 991
BspANI	GGCC	3 cut(s)	78, 867, 903
BspCNI	CTCAG	3 cut(s)	122, 298, 928
BspLI	GGNNCC	4 cut(s)	157, 772, 773, 989
BspMI	ACCTGC	1 cut(s)	837
BspPI	GGATC	1 cut(s)	256
BspT104I	TTCGAA	1 cut(s)	814
BspTI	CTTAAG	1 cut(s)	562
BsrI	ACTGG	6 cut(s)	44, 581, 645, 724, 892, 972
BssECI	CCNNGG	4 cut(s)	360, 856, 868, 983
BssMI	GATC	4 cut(s)	248, 460, 947, 977
BssT1I	CCWWGG	3 cut(s)	856, 868, 983
Bst2UI	CCWGG	2 cut(s)	332, 362
Bst4CI	ACNGT	2 cut(s)	260, 1000
BstAFI	CTTAAG	1 cut(s)	562
BstBI	TTCGAA	1 cut(s)	814
BstC8I	GCNNGC	3 cut(s)	328, 392, 839
BstDEI	CTNAG	3 cut(s)	109, 285, 936
BstDSI	CCRYGG	1 cut(s)	868
BstF5I	GGATG	6 cut(s)	281, 613, 649, 887, 920, 1009
BstKTI	GATC	4 cut(s)	251, 463, 950, 980
BstMAI	GTCTC	2 cut(s)	15, 515
BstMBI	GATC	4 cut(s)	248, 460, 947, 977
BstMWI	GCNNNNNNNGC	3 cut(s)	843, 852, 912
BstNI	CCWGG	2 cut(s)	332, 362
BstNSI	RCATGY	2 cut(s)	330, 841
BstSCI	CCNGG	3 cut(s)	330, 360, 841
BstSFI	CTRYAG	1 cut(s)	765
BstV2I	GAAGAC	2 cut(s)	189, 254
BsuRI	GGCC	3 cut(s)	78, 867, 903
BtgI	CCRYGG	1 cut(s)	868
BtsCI	GGATG	6 cut(s)	281, 613, 649, 887, 920, 1009
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	5 cut(s)	33, 51, 480, 638, 965
BveI	ACCTGC	1 cut(s)	837
Cac8I	GCNNGC	3 cut(s)	328, 392, 839
Cfr13I	GGNCC	5 cut(s)	76, 113, 771, 849, 987
Csp6I	GTAC	2 cut(s)	37, 58
CviAII	CATG	8 cut(s)	128, 141, 327, 344, 829, 838, 869, 951
CviQI	GTAC	2 cut(s)	37, 58
DdeI	CTNAG	3 cut(s)	109, 285, 936
DpnI	GATC	4 cut(s)	250, 462, 949, 979
DpnII	GATC	4 cut(s)	248, 460, 947, 977
EaeI	YGGCCR	1 cut(s)	901
Eco130I	CCWWGG	3 cut(s)	856, 868, 983
Eco32I	GATATC	1 cut(s)	448
Eco47I	GGWCC	4 cut(s)	113, 771, 849, 987
Eco57I	CTGAAG	2 cut(s)	477, 798
Eco88I	CYCGRG	1 cut(s)	676
EcoO109I	RGGNCCY	3 cut(s)	113, 771, 987
EcoRII	CCWGG	2 cut(s)	330, 360
EcoRV	GATATC	1 cut(s)	448
EcoT14I	CCWWGG	3 cut(s)	856, 868, 983
ErhI	CCWWGG	3 cut(s)	856, 868, 983
Esp3I	CGTCTC	1 cut(s)	515
FaeI	CATG	8 cut(s)	131, 144, 330, 347, 832, 841, 872, 954
FalI	AAGNNNNNCTT	2 cut(s)	771, 803
FaqI	GGGAC	3 cut(s)	185, 587, 757
FatI	CATG	8 cut(s)	127, 140, 326, 343, 828, 837, 868, 950
FauI	CCCGC	2 cut(s)	185, 998
FbaI	TGATCA	1 cut(s)	460
Fnu4HI	GCNGC	2 cut(s)	270, 904
FokI	GGATG	6 cut(s)	288, 620, 656, 894, 907, 996
Fsp4HI	GCNGC	2 cut(s)	270, 904
FspBI	CTAG	1 cut(s)	1018
GluI	GCNGC	2 cut(s)	270, 904
GsuI	CTGGAG	1 cut(s)	353
HaeIII	GGCC	3 cut(s)	78, 867, 903
HapII	CCGG	2 cut(s)	273, 842
Hin1II	CATG	8 cut(s)	131, 144, 330, 347, 832, 841, 872, 954
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HindIII	AAGCTT	2 cut(s)	392, 533
HinfI	GANTC	2 cut(s)	338, 470
HpaII	CCGG	2 cut(s)	273, 842
HphI	GGTGA	2 cut(s)	33, 972
Hpy166II	GTNNAC	4 cut(s)	18, 37, 367, 797
Hpy188I	TCNGA	4 cut(s)	151, 288, 628, 925
Hpy188III	TCNNGA	6 cut(s)	221, 377, 467, 678, 935, 975
Hpy8I	GTNNAC	4 cut(s)	18, 37, 367, 797
HpyAV	CCTTC	3 cut(s)	25, 126, 496
HpyCH4III	ACNGT	2 cut(s)	260, 1000
HpyCH4IV	ACGT	1 cut(s)	524
HpyCH4V	TGCA	4 cut(s)	72, 86, 136, 587
HpyF10VI	GCNNNNNNNGC	3 cut(s)	843, 852, 912
HpyF3I	CTNAG	3 cut(s)	109, 285, 936
HpySE526I	ACGT	1 cut(s)	524
Hsp92II	CATG	8 cut(s)	131, 144, 330, 347, 832, 841, 872, 954
KflI	GGGWCCC	1 cut(s)	771
Ksp22I	TGATCA	1 cut(s)	460
Kzo9I	GATC	4 cut(s)	248, 460, 947, 977
LweI	GCATC	3 cut(s)	574, 598, 1015
MaeI	CTAG	1 cut(s)	1018
MaeII	ACGT	1 cut(s)	524
MaeIII	GTNAC	5 cut(s)	46, 278, 355, 731, 822
MalI	GATC	4 cut(s)	250, 462, 949, 979
MboI	GATC	4 cut(s)	248, 460, 947, 977
MboII	GAAGA	6 cut(s)	138, 189, 207, 254, 362, 908
MluCI	AATT	5 cut(s)	598, 692, 702, 783, 928
MlyI	GAGTC	1 cut(s)	332
MmeI	TCCRAC	2 cut(s)	211, 948
MnlI	CCTC	6 cut(s)	135, 239, 300, 328, 746, 785
MroXI	GAANNNNTTC	1 cut(s)	783
MseI	TTAA	2 cut(s)	480, 563
MspCI	CTTAAG	1 cut(s)	562
MspI	CCGG	2 cut(s)	273, 842
MspR9I	CCNGG	3 cut(s)	332, 362, 843
Mva1269I	GAATGC	1 cut(s)	136
MvaI	CCWGG	2 cut(s)	332, 362
MwoI	GCNNNNNNNGC	3 cut(s)	843, 852, 912
NciI	CCSGG	1 cut(s)	843
NcoI	CCATGG	1 cut(s)	868
NdeII	GATC	4 cut(s)	248, 460, 947, 977
NlaIII	CATG	8 cut(s)	131, 144, 330, 347, 832, 841, 872, 954
NlaIV	GGNNCC	4 cut(s)	157, 772, 773, 989
NmuCI	GTSAC	1 cut(s)	46
NspI	RCATGY	2 cut(s)	330, 841
NspV	TTCGAA	1 cut(s)	814
PaeI	GCATGC	2 cut(s)	330, 841
PaeR7I	CTCGAG	1 cut(s)	676
PctI	GAATGC	1 cut(s)	136
PdmI	GAANNNNTTC	1 cut(s)	783
PfeI	GAWTC	1 cut(s)	470
PkrI	GCNGC	2 cut(s)	271, 905
PleI	GAGTC	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	332
PpuMI	RGGWCCY	3 cut(s)	113, 771, 987
Psp5II	RGGWCCY	3 cut(s)	113, 771, 987
Psp6I	CCWGG	2 cut(s)	330, 360
PspGI	CCWGG	2 cut(s)	330, 360
PspN4I	GGNNCC	4 cut(s)	157, 772, 773, 989
PspPI	GGNCC	5 cut(s)	76, 113, 771, 849, 987
PspPPI	RGGWCCY	3 cut(s)	113, 771, 987
RsaI	GTAC	2 cut(s)	38, 59
RsaNI	GTAC	2 cut(s)	37, 58
SaqAI	TTAA	2 cut(s)	480, 563
SatI	GCNGC	2 cut(s)	270, 904
Sau3AI	GATC	4 cut(s)	248, 460, 947, 977
Sau96I	GGNCC	5 cut(s)	76, 113, 771, 849, 987
ScaI	AGTACT	1 cut(s)	59
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	3 cut(s)	332, 362, 843
SfaNI	GCATC	3 cut(s)	574, 598, 1015
SfcI	CTRYAG	1 cut(s)	765
Sfr274I	CTCGAG	1 cut(s)	676
SfuI	TTCGAA	1 cut(s)	814
SinI	GGWCC	4 cut(s)	113, 771, 849, 987
SlaI	CTCGAG	1 cut(s)	676
SmlI	CTYRAG	3 cut(s)	219, 562, 676
SmoI	CTYRAG	3 cut(s)	219, 562, 676
SphI	GCATGC	2 cut(s)	330, 841
Sse9I	AATT	5 cut(s)	598, 692, 702, 783, 928
SsiI	CCGC	5 cut(s)	5, 178, 270, 904, 991
SspMI	CTAG	1 cut(s)	1018
StyD4I	CCNGG	3 cut(s)	330, 360, 841
StyI	CCWWGG	3 cut(s)	856, 868, 983
TaaI	ACNGT	2 cut(s)	260, 1000
TaiI	ACGT	1 cut(s)	527
TaqI	TCGA	4 cut(s)	411, 677, 814, 974
TasI	AATT	5 cut(s)	598, 692, 702, 783, 928
TatI	WGTACW	2 cut(s)	36, 57
TauI	GCSGC	2 cut(s)	272, 906
TfiI	GAWTC	1 cut(s)	470
Tru1I	TTAA	2 cut(s)	480, 563
Tru9I	TTAA	2 cut(s)	480, 563
TscAI	CASTG	5 cut(s)	33, 51, 480, 645, 972
TseFI	GTSAC	1 cut(s)	46
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	4 cut(s)	129, 194, 228, 361
TspGWI	ACGGA	1 cut(s)	168
TspRI	CASTG	5 cut(s)	33, 51, 480, 645, 972
Vha464I	CTTAAG	1 cut(s)	562
VpaK11BI	GGWCC	4 cut(s)	113, 771, 849, 987
XapI	RAATTY	1 cut(s)	598
XceI	RCATGY	2 cut(s)	330, 841
XcmI	CCANNNNNNNNNTGG	1 cut(s)	875
XhoI	CTCGAG	1 cut(s)	676
XmnI	GAANNNNTTC	1 cut(s)	783
XspI	CTAG	1 cut(s)	1018
ZrmI	AGTACT	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.