Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0009953

Physical Location & Seq

Genomic Coordinates Forward (+)

13845831 .. 13848560

Gene Structure 2730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011927

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGTGTGTTTCTTGTTTTGATTTTTCTGTGCTGCAGGTGTCATCTTTTCACTCTGGTTCGAGTGAGGAGATTTTCAGCTTTTCTTTTGGTGGATCATCAAATAATCTTCTGGCCGCAGGATGTAATTCTCAGATACTAATGTGGGATTGGAGGAACGACAAACAAGTAGCATGCTTAGAGGACTCTCATGTGGAAGATGTTACTCAGGTTCACTTCATTCCTGACCATCAAAGCAAGCTCCTTTCTGCTTCTGTAGATGGATTGATGTGTATATTTGATACAGATGGAGATATCAACGAAGATGATCATCTTGAGTCAGTGCTAAATGTGGGCACTTCCATTGGGAAGGTGGGGTTTTTCGGTGAGACGTATCAAAAGCTTTGGTGTTTGACCCATATTGAAACCTTAAGTATCTGGGACTGGAAGGATGCAACTGAAACAAATTTCCAGGATGCTCGTTCTTTGGCTTCTAATAGTTGGACTCTAGGTGAAGTTGATTATTTTGTTGATTGCCACTACTCAAGAGAAGTAGAACGATTATGGCTTATTGGTGGAGCTAACACTGGCACTTTAGGTTACTTCCCTGTAACCTACACAGGAACGCGAGCCATAGGTTCCCCTGAAGCAATTATGGAAGGTGGCCATACGGGTGTTGTCCGAAGTGTGTTGCCTATGTCCAACATGCCAGGTCCCCAAGGCCAAAGCATTTTTGGATGGACTGGTGGTGAAGATGGCCATTTATGTTGCTGGTTATCAGATGGTTCTCTGGACACCATAAACCGATCATGGAGTTCAAGCGAACTGGTTTTGAGATCACCAAAGATCCGAAAGTCAAAAAGGCATAGTCCCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0010029 GO:0040008 GO:0048580 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:1900140 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

285

Amino Acids

31.43

Weight (kDa)

4.76

Isoelectric Point (pI)

50.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_1st	PF25173	3 - 95	1e-08	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	5 - 95	2.3e-10	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47790
fragaria_vesca	FvH4_2g25530 FvH4_2g25530
malus_domestica	MD03G1286100.v1.1 MD11G1306000.v1.1
prunus_persica	Prupe.8G259400_v2.0.a1 Prupe.8G259600_v2.0.a1
pyrus_communis	pycom11g26780
rosa_chinensis	RchiOBHm_Chr6g0293741 RchiOBHm_Chr6g0293751
rosa_laevigata	RLG00000011927
rosa_multiflora	Rmu_co8509229.1_g000002 Rmu_sc0005641.1_g000008 Rmu_sc0040923.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173930
rosa_rugosa	Rorug06G0237800
rosa_samantha	Rh6AG350600 Rh6BG358000 Rh6CG364900 Rh6DG351800
rosa_wichuraiana	Rw6G030530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	25
Acc36I	ACCTGC	1 cut(s)	25
AccII	CGCG	1 cut(s)	604
AciI	CCGC	1 cut(s)	114
AclWI	GGATC	2 cut(s)	100, 817
AcoI	YGGCCR	3 cut(s)	111, 640, 733
AcsI	RAATTY	1 cut(s)	442
AcuI	CTGAAG	1 cut(s)	642
AflII	CTTAAG	1 cut(s)	406
AgsI	TTSAA	2 cut(s)	401, 795
AjnI	CCWGG	2 cut(s)	447, 685
AluBI	AGCT	4 cut(s)	78, 238, 379, 557
AluI	AGCT	4 cut(s)	78, 238, 379, 557
Alw26I	GTCTC	1 cut(s)	359
AlwI	GGATC	2 cut(s)	100, 817
AoxI	GGCC	4 cut(s)	111, 640, 697, 733
ApeKI	GCWGC	1 cut(s)	31
ApoI	RAATTY	1 cut(s)	442
AspS9I	GGNCC	1 cut(s)	689
AsuHPI	GGTGA	4 cut(s)	374, 500, 737, 807
AvaII	GGWCC	1 cut(s)	689
BaeGI	GKGCMC	1 cut(s)	335
BaeI	ACNNNNGTAYC	2 cut(s)	125, 158
BalI	TGGCCA	2 cut(s)	642, 735
BbvI	GCAGC	1 cut(s)	18
BccI	CCATC	6 cut(s)	234, 251, 278, 708, 725, 752
BciT130I	CCWGG	2 cut(s)	449, 687
BclI	TGATCA	1 cut(s)	304
BcoDI	GTCTC	1 cut(s)	359
BfaI	CTAG	2 cut(s)	485, 853
BfmI	CTRYAG	2 cut(s)	32, 252
BfrI	CTTAAG	1 cut(s)	406
BfuAI	ACCTGC	1 cut(s)	25
BisI	GCNGC	2 cut(s)	32, 114
BlsI	GCNGC	2 cut(s)	33, 115
Bme1390I	CCNGG	2 cut(s)	449, 687
Bme18I	GGWCC	1 cut(s)	689
BmgT120I	GGNCC	1 cut(s)	689
BmiI	GGNNCC	2 cut(s)	616, 691
BmrFI	CCNGG	2 cut(s)	449, 687
BmsI	GCATC	2 cut(s)	418, 442
BpuEI	CTTGAG	2 cut(s)	332, 505
BsaBI	GATNNNNATC	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	694
Bse1I	ACTGG	4 cut(s)	425, 568, 724, 807
Bse8I	GATNNNNATC	1 cut(s)	306
BseBI	CCWGG	2 cut(s)	449, 687
BseDI	CCNNGG	1 cut(s)	694
BseGI	GGATG	4 cut(s)	125, 433, 457, 719
BseJI	GATNNNNATC	1 cut(s)	306
BseMII	CTCAG	2 cut(s)	143, 218
BseNI	ACTGG	4 cut(s)	425, 568, 724, 807
BseRI	GAGGAG	1 cut(s)	80
BseSI	GKGCMC	1 cut(s)	335
BseXI	GCAGC	1 cut(s)	18
Bsh1236I	CGCG	1 cut(s)	604
BshFI	GGCC	4 cut(s)	113, 642, 699, 735
BslFI	GGGAC	3 cut(s)	431, 675, 831
BsmAI	GTCTC	1 cut(s)	359
BsmBI	CGTCTC	1 cut(s)	359
BsmFI	GGGAC	3 cut(s)	431, 675, 831
BsnI	GGCC	4 cut(s)	113, 642, 699, 735
Bsp1286I	GDGCHC	1 cut(s)	335
Bsp143I	GATC	5 cut(s)	92, 304, 782, 812, 822
BspACI	CCGC	1 cut(s)	114
BspANI	GGCC	4 cut(s)	113, 642, 699, 735
BspCNI	CTCAG	2 cut(s)	142, 217
BspFNI	CGCG	1 cut(s)	604
BspLI	GGNNCC	2 cut(s)	616, 691
BspMAI	CTGCAG	1 cut(s)	36
BspMI	ACCTGC	1 cut(s)	25
BspPI	GGATC	2 cut(s)	100, 817
BspTI	CTTAAG	1 cut(s)	406
BsrI	ACTGG	4 cut(s)	425, 568, 724, 807
BssECI	CCNNGG	1 cut(s)	694
BssMI	GATC	5 cut(s)	92, 304, 782, 812, 822
BssT1I	CCWWGG	1 cut(s)	694
Bst2UI	CCWGG	2 cut(s)	449, 687
BstAFI	CTTAAG	1 cut(s)	406
BstC8I	GCNNGC	3 cut(s)	172, 236, 606
BstDEI	CTNAG	3 cut(s)	129, 175, 204
BstF5I	GGATG	4 cut(s)	125, 433, 457, 719
BstFNI	CGCG	1 cut(s)	604
BstKTI	GATC	5 cut(s)	95, 307, 785, 815, 825
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	5 cut(s)	92, 304, 782, 812, 822
BstNI	CCWGG	2 cut(s)	449, 687
BstNSI	RCATGY	2 cut(s)	174, 685
BstSCI	CCNGG	2 cut(s)	447, 685
BstSFI	CTRYAG	2 cut(s)	32, 252
BstSLI	GKGCMC	1 cut(s)	335
BstUI	CGCG	1 cut(s)	604
BstV1I	GCAGC	1 cut(s)	18
BstX2I	RGATCY	1 cut(s)	822
BstYI	RGATCY	1 cut(s)	822
BsuRI	GGCC	4 cut(s)	113, 642, 699, 735
BtsCI	GGATG	4 cut(s)	125, 433, 457, 719
BtsIMutI	CAGTG	2 cut(s)	324, 561
BveI	ACCTGC	1 cut(s)	25
Cac8I	GCNNGC	3 cut(s)	172, 236, 606
Cfr13I	GGNCC	1 cut(s)	689
CviAII	CATG	4 cut(s)	171, 188, 682, 786
DdeI	CTNAG	3 cut(s)	129, 175, 204
DpnI	GATC	5 cut(s)	94, 306, 784, 814, 824
DpnII	GATC	5 cut(s)	92, 304, 782, 812, 822
EaeI	YGGCCR	3 cut(s)	111, 640, 733
Eco130I	CCWWGG	1 cut(s)	694
Eco32I	GATATC	1 cut(s)	292
Eco47I	GGWCC	1 cut(s)	689
Eco57I	CTGAAG	1 cut(s)	642
EcoO109I	RGGNCCY	1 cut(s)	689
EcoRII	CCWGG	2 cut(s)	447, 685
EcoRV	GATATC	1 cut(s)	292
EcoT14I	CCWWGG	1 cut(s)	694
ErhI	CCWWGG	1 cut(s)	694
Esp3I	CGTCTC	1 cut(s)	359
FaeI	CATG	4 cut(s)	174, 191, 685, 789
FaqI	GGGAC	3 cut(s)	431, 675, 831
FatI	CATG	4 cut(s)	170, 187, 681, 785
FbaI	TGATCA	1 cut(s)	304
Fnu4HI	GCNGC	2 cut(s)	32, 114
FokI	GGATG	4 cut(s)	132, 440, 464, 726
Fsp4HI	GCNGC	2 cut(s)	32, 114
FspBI	CTAG	2 cut(s)	485, 853
GluI	GCNGC	2 cut(s)	32, 114
HaeIII	GGCC	4 cut(s)	113, 642, 699, 735
Hin1II	CATG	4 cut(s)	174, 191, 685, 789
HindIII	AAGCTT	1 cut(s)	377
HinfI	GANTC	3 cut(s)	182, 314, 481
HphI	GGTGA	4 cut(s)	374, 500, 737, 807
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	4 cut(s)	132, 659, 757, 827
Hpy188III	TCNNGA	4 cut(s)	221, 311, 522, 767
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	3 cut(s)	340, 418, 629
HpyCH4IV	ACGT	1 cut(s)	368
HpyCH4V	TGCA	2 cut(s)	34, 431
HpyF3I	CTNAG	3 cut(s)	129, 175, 204
HpySE526I	ACGT	1 cut(s)	368
Hsp92II	CATG	4 cut(s)	174, 191, 685, 789
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	5 cut(s)	92, 304, 782, 812, 822
LmnI	GCTCC	2 cut(s)	243, 554
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	2 cut(s)	418, 442
MaeI	CTAG	2 cut(s)	485, 853
MaeII	ACGT	1 cut(s)	368
MaeIII	GTNAC	3 cut(s)	199, 575, 586
MalI	GATC	5 cut(s)	94, 306, 784, 814, 824
MboI	GATC	5 cut(s)	92, 304, 782, 812, 822
MboII	GAAGA	4 cut(s)	98, 206, 311, 740
MflI	RGATCY	1 cut(s)	822
MhlI	GDGCHC	1 cut(s)	335
MlsI	TGGCCA	2 cut(s)	642, 735
MluCI	AATT	3 cut(s)	124, 442, 627
MluNI	TGGCCA	2 cut(s)	642, 735
MlyI	GAGTC	3 cut(s)	176, 323, 475
MmeI	TCCRAC	2 cut(s)	458, 702
MnlI	CCTC	3 cut(s)	58, 144, 172
Mox20I	TGGCCA	2 cut(s)	642, 735
MscI	TGGCCA	2 cut(s)	642, 735
MseI	TTAA	1 cut(s)	407
MslI	CAYNNNNRTG	1 cut(s)	648
Msp20I	TGGCCA	2 cut(s)	642, 735
MspCI	CTTAAG	1 cut(s)	406
MspR9I	CCNGG	2 cut(s)	449, 687
MvaI	CCWGG	2 cut(s)	449, 687
MvnI	CGCG	1 cut(s)	604
NdeII	GATC	5 cut(s)	92, 304, 782, 812, 822
NlaIII	CATG	4 cut(s)	174, 191, 685, 789
NlaIV	GGNNCC	2 cut(s)	616, 691
NspI	RCATGY	2 cut(s)	174, 685
PaeI	GCATGC	1 cut(s)	174
PaqCI	CACCTGC	1 cut(s)	25
PfoI	TCCNGGA	1 cut(s)	447
PkrI	GCNGC	2 cut(s)	33, 115
PleI	GAGTC	3 cut(s)	176, 322, 475
PpsI	GAGTC	3 cut(s)	176, 322, 475
PpuMI	RGGWCCY	1 cut(s)	689
Psp5II	RGGWCCY	1 cut(s)	689
Psp6I	CCWGG	2 cut(s)	447, 685
PspGI	CCWGG	2 cut(s)	447, 685
PspN4I	GGNNCC	2 cut(s)	616, 691
PspPI	GGNCC	1 cut(s)	689
PspPPI	RGGWCCY	1 cut(s)	689
PstI	CTGCAG	1 cut(s)	36
PsuI	RGATCY	1 cut(s)	822
RseI	CAYNNNNRTG	1 cut(s)	648
SaqAI	TTAA	1 cut(s)	407
SatI	GCNGC	2 cut(s)	32, 114
Sau3AI	GATC	5 cut(s)	92, 304, 782, 812, 822
Sau96I	GGNCC	1 cut(s)	689
SchI	GAGTC	3 cut(s)	176, 323, 475
ScrFI	CCNGG	2 cut(s)	449, 687
SduI	GDGCHC	1 cut(s)	335
SfaNI	GCATC	2 cut(s)	418, 442
SfcI	CTRYAG	2 cut(s)	32, 252
SinI	GGWCC	1 cut(s)	689
SmiMI	CAYNNNNRTG	1 cut(s)	648
SmlI	CTYRAG	3 cut(s)	311, 406, 520
SmoI	CTYRAG	3 cut(s)	311, 406, 520
SphI	GCATGC	1 cut(s)	174
Sse9I	AATT	3 cut(s)	124, 442, 627
SsiI	CCGC	1 cut(s)	114
SspMI	CTAG	2 cut(s)	485, 853
StyD4I	CCNGG	2 cut(s)	447, 685
StyI	CCWWGG	1 cut(s)	694
TaiI	ACGT	1 cut(s)	371
TaqI	TCGA	1 cut(s)	59
TasI	AATT	3 cut(s)	124, 442, 627
TauI	GCSGC	1 cut(s)	116
Tru1I	TTAA	1 cut(s)	407
Tru9I	TTAA	1 cut(s)	407
TscAI	CASTG	2 cut(s)	324, 568
TseI	GCWGC	1 cut(s)	31
TspDTI	ATGAA	1 cut(s)	205
TspRI	CASTG	2 cut(s)	324, 568
Vha464I	CTTAAG	1 cut(s)	406
VpaK11BI	GGWCC	1 cut(s)	689
XapI	RAATTY	1 cut(s)	442
XceI	RCATGY	2 cut(s)	174, 685
XcmI	CCANNNNNNNNNTGG	2 cut(s)	346, 707
XspI	CTAG	2 cut(s)	485, 853

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.