Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009953

Physical Location & Seq

Genomic Coordinates Reverse (-)

56288875 .. 56290229

Gene Structure 1355 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26358

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGTGTATATTTGATACAGATGGAGATATCAACGAAGATGATCATCTTGAGTCAGTGCTAAATGTGGGCACTTCCATTGGGAAGGTGGGGTTTTTTGGTGAGACGTATCAAAAGCTTTGGTGTTTGACCCATATTGAAACCTTAAGTATCTGGGACTGGAAGGATGCAACTGAAACAAATTTCCAGGACGCTCGTTCGTTGGCTTCTAACAGTTGGACTCTAGGTGAAGTTGATTATTTTGTTGATTGCCACTACTCAAGAGAAGCAGAACGATTATGGCTTATTGGTGGCGCCAACACTGGCACTTTAGGGTACTTCCCTGTAACTTACACAGGAACGCGAGCCATAGGTTCCCCTGAAGCAATTATGGAAGGTGGCCATACGGGTGTTGTCCGAAGTGTGTTGCCTATGTCAAACATGCCAGGTCCCCAAGGCCAAAGCATTTTTGGATGGACTGGCGGTGAAGATGGCCATTTATGTTGCTGGTTATCAGATGGTTCTCTGGACACCATAAACCGATCATGGAGTTCAAGCGAACTGGTTTTGAGATCACCAAAGATCCGGAAGTCAAAAAGGCACAGTCCCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0010029 GO:0040008 GO:0048580 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:1900140 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

196

Amino Acids

21.75

Weight (kDa)

4.93

Isoelectric Point (pI)

51.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47790
fragaria_vesca	FvH4_2g25530 FvH4_2g25530
malus_domestica	MD03G1286100.v1.1 MD11G1306000.v1.1
prunus_persica	Prupe.8G259400_v2.0.a1 Prupe.8G259600_v2.0.a1
pyrus_communis	pycom11g26780
rosa_chinensis	RchiOBHm_Chr6g0293741 RchiOBHm_Chr6g0293751
rosa_laevigata	RLG00000011927
rosa_multiflora	Rmu_co8509229.1_g000002 Rmu_sc0005641.1_g000008 Rmu_sc0040923.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173930
rosa_rugosa	Rorug06G0237800
rosa_samantha	Rh6AG350600 Rh6BG358000 Rh6CG364900 Rh6DG351800
rosa_wichuraiana	Rw6G030530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	290
AccII	CGCG	1 cut(s)	340
AccIII	TCCGGA	1 cut(s)	561
AciI	CCGC	1 cut(s)	459
AclWI	GGATC	1 cut(s)	553
AcoI	YGGCCR	2 cut(s)	376, 469
AcsI	RAATTY	1 cut(s)	178
AcuI	CTGAAG	1 cut(s)	378
AcyI	GRCGYC	1 cut(s)	291
AfaI	GTAC	1 cut(s)	314
AflII	CTTAAG	1 cut(s)	142
AgsI	TTSAA	2 cut(s)	137, 531
AjnI	CCWGG	2 cut(s)	183, 421
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
Alw26I	GTCTC	1 cut(s)	95
AlwI	GGATC	1 cut(s)	553
Aor13HI	TCCGGA	1 cut(s)	561
AoxI	GGCC	3 cut(s)	376, 433, 469
ApoI	RAATTY	1 cut(s)	178
AspLEI	GCGC	1 cut(s)	293
AspS9I	GGNCC	1 cut(s)	425
AsuHPI	GGTGA	4 cut(s)	110, 236, 473, 543
AvaII	GGWCC	1 cut(s)	425
BaeGI	GKGCMC	1 cut(s)	71
BalI	TGGCCA	2 cut(s)	378, 471
BanI	GGYRCC	1 cut(s)	290
BccI	CCATC	4 cut(s)	14, 444, 461, 488
BciT130I	CCWGG	2 cut(s)	185, 423
BclI	TGATCA	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	2 cut(s)	221, 589
BfoI	RGCGCY	1 cut(s)	294
BfrI	CTTAAG	1 cut(s)	142
Bme1390I	CCNGG	2 cut(s)	185, 423
Bme18I	GGWCC	1 cut(s)	425
BmgT120I	GGNCC	1 cut(s)	425
BmiI	GGNNCC	3 cut(s)	292, 352, 427
BmrFI	CCNGG	2 cut(s)	185, 423
BmsI	GCATC	1 cut(s)	154
BpuEI	CTTGAG	2 cut(s)	68, 241
BsaBI	GATNNNNATC	1 cut(s)	42
BsaHI	GRCGYC	1 cut(s)	291
BsaJI	CCNNGG	1 cut(s)	430
BsaWI	WCCGGW	1 cut(s)	561
Bse1I	ACTGG	4 cut(s)	161, 304, 460, 543
Bse8I	GATNNNNATC	1 cut(s)	42
BseAI	TCCGGA	1 cut(s)	561
BseBI	CCWGG	2 cut(s)	185, 423
BseDI	CCNNGG	1 cut(s)	430
BseGI	GGATG	2 cut(s)	169, 455
BseJI	GATNNNNATC	1 cut(s)	42
BseNI	ACTGG	4 cut(s)	161, 304, 460, 543
BseSI	GKGCMC	1 cut(s)	71
Bsh1236I	CGCG	1 cut(s)	340
BshFI	GGCC	3 cut(s)	378, 435, 471
BshNI	GGYRCC	1 cut(s)	290
BsiSI	CCGG	1 cut(s)	562
BslFI	GGGAC	3 cut(s)	167, 411, 567
BsmAI	GTCTC	1 cut(s)	95
BsmBI	CGTCTC	1 cut(s)	95
BsmFI	GGGAC	3 cut(s)	167, 411, 567
BsnI	GGCC	3 cut(s)	378, 435, 471
Bsp1286I	GDGCHC	1 cut(s)	71
Bsp13I	TCCGGA	1 cut(s)	561
Bsp143I	GATC	4 cut(s)	40, 518, 548, 558
BspACI	CCGC	1 cut(s)	459
BspANI	GGCC	3 cut(s)	378, 435, 471
BspEI	TCCGGA	1 cut(s)	561
BspFNI	CGCG	1 cut(s)	340
BspLI	GGNNCC	3 cut(s)	292, 352, 427
BspPI	GGATC	1 cut(s)	553
BspT107I	GGYRCC	1 cut(s)	290
BspTI	CTTAAG	1 cut(s)	142
BsrI	ACTGG	4 cut(s)	161, 304, 460, 543
BssECI	CCNNGG	1 cut(s)	430
BssMI	GATC	4 cut(s)	40, 518, 548, 558
BssNI	GRCGYC	1 cut(s)	291
BssT1I	CCWWGG	1 cut(s)	430
Bst2UI	CCWGG	2 cut(s)	185, 423
Bst4CI	ACNGT	2 cut(s)	212, 581
BstACI	GRCGYC	1 cut(s)	291
BstAFI	CTTAAG	1 cut(s)	142
BstC8I	GCNNGC	1 cut(s)	342
BstF5I	GGATG	2 cut(s)	169, 455
BstFNI	CGCG	1 cut(s)	340
BstH2I	RGCGCY	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	293
BstKTI	GATC	4 cut(s)	43, 521, 551, 561
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	4 cut(s)	40, 518, 548, 558
BstNI	CCWGG	2 cut(s)	185, 423
BstNSI	RCATGY	1 cut(s)	421
BstSCI	CCNGG	2 cut(s)	183, 421
BstSLI	GKGCMC	1 cut(s)	71
BstUI	CGCG	1 cut(s)	340
BstX2I	RGATCY	1 cut(s)	558
BstYI	RGATCY	1 cut(s)	558
BsuRI	GGCC	3 cut(s)	378, 435, 471
BtsCI	GGATG	2 cut(s)	169, 455
BtsIMutI	CAGTG	2 cut(s)	60, 297
Cac8I	GCNNGC	1 cut(s)	342
CfoI	GCGC	1 cut(s)	293
Cfr13I	GGNCC	1 cut(s)	425
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	2 cut(s)	418, 522
CviJI	RGCY	7 cut(s)	115, 203, 280, 344, 378, 435, 471
CviKI_1	RGCY	7 cut(s)	115, 203, 280, 344, 378, 435, 471
CviQI	GTAC	1 cut(s)	313
DinI	GGCGCC	1 cut(s)	292
DpnI	GATC	4 cut(s)	42, 520, 550, 560
DpnII	GATC	4 cut(s)	40, 518, 548, 558
EaeI	YGGCCR	2 cut(s)	376, 469
Eco130I	CCWWGG	1 cut(s)	430
Eco32I	GATATC	1 cut(s)	28
Eco47I	GGWCC	1 cut(s)	425
Eco57I	CTGAAG	1 cut(s)	378
EcoO109I	RGGNCCY	1 cut(s)	425
EcoRII	CCWGG	2 cut(s)	183, 421
EcoRV	GATATC	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	430
EgeI	GGCGCC	1 cut(s)	292
EheI	GGCGCC	1 cut(s)	292
ErhI	CCWWGG	1 cut(s)	430
Esp3I	CGTCTC	1 cut(s)	95
FaeI	CATG	2 cut(s)	421, 525
FaqI	GGGAC	3 cut(s)	167, 411, 567
FatI	CATG	2 cut(s)	417, 521
FbaI	TGATCA	1 cut(s)	40
FokI	GGATG	2 cut(s)	176, 462
FspBI	CTAG	2 cut(s)	221, 589
GlaI	GCGC	1 cut(s)	292
HaeII	RGCGCY	1 cut(s)	294
HaeIII	GGCC	3 cut(s)	378, 435, 471
HapII	CCGG	1 cut(s)	562
HgaI	GACGC	1 cut(s)	197
HhaI	GCGC	1 cut(s)	293
Hin1I	GRCGYC	1 cut(s)	291
Hin1II	CATG	2 cut(s)	421, 525
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	2 cut(s)	50, 217
HpaII	CCGG	1 cut(s)	562
HphI	GGTGA	4 cut(s)	110, 236, 473, 543
Hpy188I	TCNGA	2 cut(s)	395, 493
Hpy188III	TCNNGA	4 cut(s)	47, 258, 503, 562
HpyAV	CCTTC	3 cut(s)	76, 154, 365
HpyCH4III	ACNGT	2 cut(s)	212, 581
HpyCH4IV	ACGT	1 cut(s)	104
HpyCH4V	TGCA	1 cut(s)	167
HpySE526I	ACGT	1 cut(s)	104
Hsp92I	GRCGYC	1 cut(s)	291
Hsp92II	CATG	2 cut(s)	421, 525
HspAI	GCGC	1 cut(s)	291
KasI	GGCGCC	1 cut(s)	290
Kpn2I	TCCGGA	1 cut(s)	561
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	4 cut(s)	40, 518, 548, 558
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	2 cut(s)	221, 589
MaeII	ACGT	1 cut(s)	104
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	4 cut(s)	42, 520, 550, 560
MboI	GATC	4 cut(s)	40, 518, 548, 558
MboII	GAAGA	2 cut(s)	47, 476
MflI	RGATCY	1 cut(s)	558
MhlI	GDGCHC	1 cut(s)	71
MlsI	TGGCCA	2 cut(s)	378, 471
MluCI	AATT	2 cut(s)	178, 363
MluNI	TGGCCA	2 cut(s)	378, 471
Mly113I	GGCGCC	1 cut(s)	291
MlyI	GAGTC	2 cut(s)	59, 211
MmeI	TCCRAC	1 cut(s)	194
Mox20I	TGGCCA	2 cut(s)	378, 471
MroI	TCCGGA	1 cut(s)	561
MscI	TGGCCA	2 cut(s)	378, 471
MseI	TTAA	1 cut(s)	143
MslI	CAYNNNNRTG	1 cut(s)	384
Msp20I	TGGCCA	2 cut(s)	378, 471
MspCI	CTTAAG	1 cut(s)	142
MspI	CCGG	1 cut(s)	562
MspR9I	CCNGG	2 cut(s)	185, 423
MvaI	CCWGG	2 cut(s)	185, 423
MvnI	CGCG	1 cut(s)	340
NarI	GGCGCC	1 cut(s)	291
NdeII	GATC	4 cut(s)	40, 518, 548, 558
NlaIII	CATG	2 cut(s)	421, 525
NlaIV	GGNNCC	3 cut(s)	292, 352, 427
NspI	RCATGY	1 cut(s)	421
PfoI	TCCNGGA	1 cut(s)	183
PleI	GAGTC	2 cut(s)	58, 211
PluTI	GGCGCC	1 cut(s)	294
PpsI	GAGTC	2 cut(s)	58, 211
PpuMI	RGGWCCY	1 cut(s)	425
Psp5II	RGGWCCY	1 cut(s)	425
Psp6I	CCWGG	2 cut(s)	183, 421
PspGI	CCWGG	2 cut(s)	183, 421
PspN4I	GGNNCC	3 cut(s)	292, 352, 427
PspPI	GGNCC	1 cut(s)	425
PspPPI	RGGWCCY	1 cut(s)	425
PsuI	RGATCY	1 cut(s)	558
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
RseI	CAYNNNNRTG	1 cut(s)	384
SaqAI	TTAA	1 cut(s)	143
Sau3AI	GATC	4 cut(s)	40, 518, 548, 558
Sau96I	GGNCC	1 cut(s)	425
SchI	GAGTC	2 cut(s)	59, 211
ScrFI	CCNGG	2 cut(s)	185, 423
SduI	GDGCHC	1 cut(s)	71
SetI	ASST	8 cut(s)	87, 107, 117, 143, 226, 352, 376, 427
SfaNI	GCATC	1 cut(s)	154
SfoI	GGCGCC	1 cut(s)	292
SinI	GGWCC	1 cut(s)	425
SmiMI	CAYNNNNRTG	1 cut(s)	384
SmlI	CTYRAG	3 cut(s)	47, 142, 256
SmoI	CTYRAG	3 cut(s)	47, 142, 256
Sse9I	AATT	2 cut(s)	178, 363
SsiI	CCGC	1 cut(s)	459
SspDI	GGCGCC	1 cut(s)	290
SspMI	CTAG	2 cut(s)	221, 589
StyD4I	CCNGG	2 cut(s)	183, 421
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	2 cut(s)	212, 581
TaiI	ACGT	1 cut(s)	107
TasI	AATT	2 cut(s)	178, 363
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TscAI	CASTG	2 cut(s)	60, 304
TspRI	CASTG	2 cut(s)	60, 304
Vha464I	CTTAAG	1 cut(s)	142
VpaK11BI	GGWCC	1 cut(s)	425
XapI	RAATTY	1 cut(s)	178
XceI	RCATGY	1 cut(s)	421
XcmI	CCANNNNNNNNNTGG	2 cut(s)	82, 443
XspI	CTAG	2 cut(s)	221, 589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.